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CaUC01G012690 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC01G012690
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionSWIM-type domain-containing protein
Genome locationCiama_Chr01:24805282..24811814
RNA-Seq ExpressionCaUC01G012690
SyntenyCaUC01G012690
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN72555.1 hypothetical protein VITISV_015793 [Vitis vinifera]4.0e-0443.64Show/hide
Query:  WPNKNFPTIYPDES-------------RNEMDWRETSIKSHCGICRQ-GHNRKRC
        WP  NFP ++P+ +             RNEMDWRE S+K  CG+C+Q GHN ++C
Subjt:  WPNKNFPTIYPDES-------------RNEMDWRETSIKSHCGICRQ-GHNRKRC

RVW52006.1 hypothetical protein CK203_068088 [Vitis vinifera]1.0e-0445.45Show/hide
Query:  WPNKNFPTIYPDES-------------RNEMDWRETSIKSHCGICRQ-GHNRKRC
        WP  NFP ++P+ +             RNEMDWRE S+K  CG+C+Q GHNR++C
Subjt:  WPNKNFPTIYPDES-------------RNEMDWRETSIKSHCGICRQ-GHNRKRC

RVX19406.1 hypothetical protein CK203_008540 [Vitis vinifera]1.0e-0445.45Show/hide
Query:  WPNKNFPTIYPDES-------------RNEMDWRETSIKSHCGICRQ-GHNRKRC
        WP  NFP ++P+ +             RNEMDWRE S+K  CG+C+Q GHNR++C
Subjt:  WPNKNFPTIYPDES-------------RNEMDWRETSIKSHCGICRQ-GHNRKRC

TYK18693.1 hypothetical protein E5676_scaffold481G00410 [Cucumis melo var. makuwa]2.6e-0849.35Show/hide
Query:  MSNAPSPPNTVDLYISQPNISNQTPMREIENNIGVESDNDEEPDLDPIVTTNLEDIEIDDDESDLEQPTHEFYGVHD
        MSNAP  P+ V+LYISQPN+S+  P+ E E N     +N++    DP + TN+E  E+DDD+SD++QP  E +GVHD
Subjt:  MSNAPSPPNTVDLYISQPNISNQTPMREIENNIGVESDNDEEPDLDPIVTTNLEDIEIDDDESDLEQPTHEFYGVHD

XP_038877923.1 uncharacterized protein LOC120070133 [Benincasa hispida]8.8e-1248.24Show/hide
Query:  SESDLRFMMSNAPSPPNTVDLYISQPNISNQTPMREIENNIGVESDNDEEPDLDPIVTTNLEDIEIDDDESDLEQPTHEFYGVHD
        S+ D++FMMSNAP PPN V+LYISQP++ + T  RE    + +ES   E+   DP + TN E++++DDD+ DL+Q + +FYGVH+
Subjt:  SESDLRFMMSNAPSPPNTVDLYISQPNISNQTPMREIENNIGVESDNDEEPDLDPIVTTNLEDIEIDDDESDLEQPTHEFYGVHD

TrEMBL top hitse value%identityAlignment
A0A438EWG2 SWIM-type domain-containing protein5.0e-0545.45Show/hide
Query:  WPNKNFPTIYPDES-------------RNEMDWRETSIKSHCGICRQ-GHNRKRC
        WP  NFP ++P+ +             RNEMDWRE S+K  CG+C+Q GHNR++C
Subjt:  WPNKNFPTIYPDES-------------RNEMDWRETSIKSHCGICRQ-GHNRKRC

A0A438HTP0 Uncharacterized protein7.3e-0443.64Show/hide
Query:  WPNKNFPTIYPDES-------------RNEMDWRETSIKSHCGICRQ-GHNRKRC
        WP  NFP + P+ +             RNEMDWRE S+K  CG+C+Q GHN ++C
Subjt:  WPNKNFPTIYPDES-------------RNEMDWRETSIKSHCGICRQ-GHNRKRC

A0A438KDW5 SWIM-type domain-containing protein5.0e-0545.45Show/hide
Query:  WPNKNFPTIYPDES-------------RNEMDWRETSIKSHCGICRQ-GHNRKRC
        WP  NFP ++P+ +             RNEMDWRE S+K  CG+C+Q GHNR++C
Subjt:  WPNKNFPTIYPDES-------------RNEMDWRETSIKSHCGICRQ-GHNRKRC

A0A5D3D569 Uncharacterized protein1.3e-0849.35Show/hide
Query:  MSNAPSPPNTVDLYISQPNISNQTPMREIENNIGVESDNDEEPDLDPIVTTNLEDIEIDDDESDLEQPTHEFYGVHD
        MSNAP  P+ V+LYISQPN+S+  P+ E E N     +N++    DP + TN+E  E+DDD+SD++QP  E +GVHD
Subjt:  MSNAPSPPNTVDLYISQPNISNQTPMREIENNIGVESDNDEEPDLDPIVTTNLEDIEIDDDESDLEQPTHEFYGVHD

A5BP71 PMD domain-containing protein1.9e-0443.64Show/hide
Query:  WPNKNFPTIYPDES-------------RNEMDWRETSIKSHCGICRQ-GHNRKRC
        WP  NFP ++P+ +             RNEMDWRE S+K  CG+C+Q GHN ++C
Subjt:  WPNKNFPTIYPDES-------------RNEMDWRETSIKSHCGICRQ-GHNRKRC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTTGAGTGAATCTGATTTAAGATTTATGATGAGCAATGCTCCATCCCCTCCAAATACAGTTGATCTATATATTTCTCAACCAAACATCTCAAACCAAACA
CCAATGAGAGAAATTGAAAATAATATTGGAGTCGAAAGTGATAATGACGAAGAGCCTGATTTGGATCCAATTGTCACCACAAATTTGGAAGACATTGAAATCGAC
GATGATGAAAGTGACCTAGAGCAACCCACCCATGAATTTTATGGTGTTCATGATAGGACTATTACAAGATCCCTACTTATTTGTCCTGTTATTCACCTTAGTTCG
AGCCTATCCCTAATAAAAAAATGTTGGCCTAACAAGAACTTCCCCACTATTTATCCAGATGAGTCAAGGAACGAGATGGATTGGAGGGAGACATCAATCAAGTCA
CATTGTGGCATTTGCAGGCAAGGACATAACCGAAAACGATGCCAAACCGTGGAAAATAGGAAGGTTAGGAAGGAAAGGAAAGAAGAGGAGAACTTACCAGGAATT
CAAGTCACAAGAAGGAAAGGGATGGAAACTCTCTATCATTTTTCCCATAAAGTTCTAATGATGAACTTTACGGGAAAAGTGACAACGAGCTCAATTCCTGACATT
TCTTACACATATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGTTGAGTGAATCTGATTTAAGATTTATGATGAGCAATGCTCCATCCCCTCCAAATACAGTTGATCTATATATTTCTCAACCAAACATCTCAAACCAAACA
CCAATGAGAGAAATTGAAAATAATATTGGAGTCGAAAGTGATAATGACGAAGAGCCTGATTTGGATCCAATTGTCACCACAAATTTGGAAGACATTGAAATCGAC
GATGATGAAAGTGACCTAGAGCAACCCACCCATGAATTTTATGGTGTTCATGATAGGACTATTACAAGATCCCTACTTATTTGTCCTGTTATTCACCTTAGTTCG
AGCCTATCCCTAATAAAAAAATGTTGGCCTAACAAGAACTTCCCCACTATTTATCCAGATGAGTCAAGGAACGAGATGGATTGGAGGGAGACATCAATCAAGTCA
CATTGTGGCATTTGCAGGCAAGGACATAACCGAAAACGATGCCAAACCGTGGAAAATAGGAAGGTTAGGAAGGAAAGGAAAGAAGAGGAGAACTTACCAGGAATT
CAAGTCACAAGAAGGAAAGGGATGGAAACTCTCTATCATTTTTCCCATAAAGTTCTAATGATGAACTTTACGGGAAAAGTGACAACGAGCTCAATTCCTGACATT
TCTTACACATATTAG
Protein sequenceShow/hide protein sequence
MSLSESDLRFMMSNAPSPPNTVDLYISQPNISNQTPMREIENNIGVESDNDEEPDLDPIVTTNLEDIEIDDDESDLEQPTHEFYGVHDRTITRSLLICPVIHLSS
SLSLIKKCWPNKNFPTIYPDESRNEMDWRETSIKSHCGICRQGHNRKRCQTVENRKVRKERKEEENLPGIQVTRRKGMETLYHFSHKVLMMNFTGKVTTSSIPDI
SYTY