CuGenDBv2

Gene ID	CaUC01G012830
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Cytochrome f
Genome location	Ciama_Chr01:25438012..25444105
RNA-Seq Expression	CaUC01G012830
Synteny	CaUC01G012830
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0022900 - electron transport chain (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0031361 - integral component of thylakoid membrane (cellular component) GO:0005506 - iron ion binding (molecular function) GO:0009055 - electron transfer activity (molecular function) GO:0020037 - heme binding (molecular function)
InterPro domains	IPR002325 - Cytochrome f IPR011054 - Rudiment single hybrid motif IPR024094 - Cytochrome f large domain IPR036826 - Cytochrome f large domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

QOP39842.1 cytochrome f [Carya hunanensis]

5.8e-50

96.19

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Query:  YPILSPDLATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATTAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL
        +PILSPD ATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATTAGIVSKIIRKEKGGYEITIVDA++GRQVVDIIPPGPELLVSEGESIKLDQPL
Subjt:  YPILSPDLATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATTAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL

Query:  TSNPN
        TSNPN
Subjt:  TSNPN

YP_004841796.1 cytochrome f [Cucumis melo subsp. melo]

2.6e-50

97.14

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Query:  YPILSPDLATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATTAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL
        +PILSPD ATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNAT AGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL
Subjt:  YPILSPDLATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATTAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL

Query:  TSNPN
        TSNPN
Subjt:  TSNPN

YP_009326002.1 cytochrome f [Citrullus lanatus]

6.9e-51

98.1

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Query:  YPILSPDLATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATTAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL
        +PILSPD ATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATTAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL
Subjt:  YPILSPDLATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATTAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL

Query:  TSNPN
        TSNPN
Subjt:  TSNPN

YP_009752003.1 cytochrome f [Cionosicys macranthus]

2.6e-50

97.14

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Query:  YPILSPDLATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATTAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL
        +PILSPD ATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNAT AGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL
Subjt:  YPILSPDLATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATTAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL

Query:  TSNPN
        TSNPN
Subjt:  TSNPN

YP_010131107.1 cytochrome f [Benincasa hispida]

2.6e-50

97.14

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Query:  YPILSPDLATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATTAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL
        +PILSPD ATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNAT AGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL
Subjt:  YPILSPDLATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATTAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL

Query:  TSNPN
        TSNPN
Subjt:  TSNPN

TrEMBL top hits

e value

%identity

Alignment

A0A1P8LE85 Cytochrome f

3.3e-51

98.1

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Query:  YPILSPDLATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATTAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL
        +PILSPD ATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATTAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL
Subjt:  YPILSPDLATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATTAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL

Query:  TSNPN
        TSNPN
Subjt:  TSNPN

A0A1P8LEF8 Cytochrome f

3.3e-51

98.1

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Query:  YPILSPDLATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATTAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL
        +PILSPD ATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATTAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL
Subjt:  YPILSPDLATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATTAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL

Query:  TSNPN
        TSNPN
Subjt:  TSNPN

A0A249RX39 Cytochrome f

3.3e-51

98.1

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Query:  YPILSPDLATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATTAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL
        +PILSPD ATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATTAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL
Subjt:  YPILSPDLATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATTAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL

Query:  TSNPN
        TSNPN
Subjt:  TSNPN

A0A249RXC8 Cytochrome f

3.3e-51

98.1

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Query:  YPILSPDLATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATTAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL
        +PILSPD ATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATTAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL
Subjt:  YPILSPDLATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATTAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL

Query:  TSNPN
        TSNPN
Subjt:  TSNPN

A0A343A8C3 Cytochrome f

3.3e-51

98.1

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Query:  YPILSPDLATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATTAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL
        +PILSPD ATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATTAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL
Subjt:  YPILSPDLATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATTAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL

Query:  TSNPN
        TSNPN
Subjt:  TSNPN

SwissProt top hits

e value

%identity

Alignment

P06449 Cytochrome f

1.2e-50

92.38

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Query:  YPILSPDLATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATTAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL
        +PILSPD ATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNN VYNAT AGIVSKIIRKEKGGYEITI DA++GRQVVDIIPPGPELLVSEGESIK DQPL
Subjt:  YPILSPDLATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATTAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL

Query:  TSNPN
        TSNPN
Subjt:  TSNPN

Q09X04 Cytochrome f

2.2e-52

95.24

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Query:  YPILSPDLATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATTAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL
        +PILSPD ATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNAT+AGIVSKIIRKEKGGYEITIVDA++GRQVVDIIPPGPELLVSEGESIKLDQPL
Subjt:  YPILSPDLATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATTAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL

Query:  TSNPN
        TSNPN
Subjt:  TSNPN

Q0ZJ07 Cytochrome f

4.2e-51

93.33

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Query:  YPILSPDLATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATTAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL
        +PILSPD ATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNN VYNAT AGIVSKIIRKEKGGYEITI DA++GRQVVDIIPPGPELLVSEGESIKLDQPL
Subjt:  YPILSPDLATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATTAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL

Query:  TSNPN
        TSNPN
Subjt:  TSNPN

Q2QD76 Cytochrome f

3.4e-53

97.14

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Query:  YPILSPDLATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATTAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL
        +PILSPD ATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNAT AGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL
Subjt:  YPILSPDLATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATTAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL

Query:  TSNPN
        TSNPN
Subjt:  TSNPN

Q3C1I8 Cytochrome f

1.2e-50

92.38

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Query:  YPILSPDLATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATTAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL
        +PILSPD ATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNN VYNAT AGIVSKIIRKEKGGYEITI DA++GRQVVDIIPPGPELLVSEGESIK DQPL
Subjt:  YPILSPDLATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATTAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL

Query:  TSNPN
        TSNPN
Subjt:  TSNPN

Arabidopsis top hits

e value

%identity

Alignment

ATCG00540.1 photosynthetic electron transfer A

6.8e-49

86.67

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Query:  YPILSPDLATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATTAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL
        +PIL+PD AT KDVHFLKYPIYVGGNRGRGQIYPDGSKSNN VYNAT  GI+SKI+RKEKGGYEITIVDA+NGR+V+DIIP G ELLVSEGESIKLDQPL
Subjt:  YPILSPDLATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATTAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPL

Query:  TSNPN
        TSNPN
Subjt:  TSNPN

Sequences

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CDS sequence

Show/hide CDS sequence

ATGATTCCATACAACAAGCTACCAATCATACTTTGGTATCCTATTCTTTCCCCAGACCTTGCGACTAAGAAAGATGTTCACTTCTTAAAATATCCCATATACGTA
GGCGGGAACAGGGGAAGGGGTCAGATTTATCCCGACGGGAGTAAGAGTAATAATAATGTTTATAATGCTACAACCGCAGGTATAGTAAGCAAAATAATACGAAAA
GAAAAAGGAGGATATGAAATAACCATAGTGGATGCAGCGAATGGGCGTCAAGTGGTTGATATTATCCCTCCAGGACCAGAACTTCTTGTTTCAGAGGGCGAATCT
ATCAAACTTGATCAACCATTAACGAGTAATCCTAAT

mRNA sequence

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Protein sequence

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MIPYNKLPIILWYPILSPDLATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATTAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGES
IKLDQPLTSNPN

CaUC01G012830 (gene) of Watermelon (USVL246-FR2) v1 genome