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CaUC01G012960 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC01G012960
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionTranscription termination factor 4
Genome locationCiama_Chr01:25849084..25851412
RNA-Seq ExpressionCaUC01G012960
SyntenyCaUC01G012960
Gene Ontology termsGO:0090266 - regulation of mitotic cell cycle spindle assembly checkpoint (biological process)
GO:0005680 - anaphase-promoting complex (cellular component)
InterPro domainsIPR026182 - Anaphase-promoting complex subunit 15


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152491.1 uncharacterized protein LOC101206898 [Cucumis sativus]5.6e-4296.91Show/hide
Query:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG
        MLQFPAFMTQYPWSTR IPTSFLLPSQWPQPQNEELLLAMEE+DFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNA+ESEAEEFEQETG
Subjt:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG
XP_008438807.1 PREDICTED: uncharacterized protein LOC103483797 [Cucumis melo]2.3e-43100Show/hide
Query:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG
        MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG
Subjt:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG
XP_018813880.1 uncharacterized protein LOC108985877 [Juglans regia]4.2e-3789.8Show/hide
Query:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDI--EAEDDDADNAEESEAEEFEQET
        MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQP +EELLLAMEESDFEEKCNEIRKTNSNLVVIGK T DNDKED   +A+DDDADNAEESE EEFEQET
Subjt:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDI--EAEDDDADNAEESEAEEFEQET
XP_022137094.1 uncharacterized protein LOC111008654 [Momordica charantia]9.6e-4297.92Show/hide
Query:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQET
        MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKM+ADNDKEDIEAEDDDADN EESEAEEFEQET
Subjt:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQET
XP_038894516.1 uncharacterized protein LOC120083062 [Benincasa hispida]5.6e-4297.94Show/hide
Query:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG
        MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSN VVIGKM ADNDKEDIEAEDDDADNAEESEAEEFEQETG
Subjt:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG
TrEMBL top hitse value%identityAlignment
A0A0A0LWF0 Uncharacterized protein2.7e-4296.91Show/hide
Query:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG
        MLQFPAFMTQYPWSTR IPTSFLLPSQWPQPQNEELLLAMEE+DFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNA+ESEAEEFEQETG
Subjt:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG
A0A1S3AXA5 uncharacterized protein LOC1034837971.1e-43100Show/hide
Query:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG
        MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG
Subjt:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG
A0A5A7UJS1 Transcription termination factor 41.1e-43100Show/hide
Query:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG
        MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG
Subjt:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG
A0A6J1GSM6 uncharacterized protein LOC1114567621.1e-43100Show/hide
Query:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG
        MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG
Subjt:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG
A0A6J1JWJ6 uncharacterized protein LOC1114903241.1e-43100Show/hide
Query:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG
        MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG
Subjt:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G63135.1 unknown protein3.6e-3172.73Show/hide
Query:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKE--DIEAEDDDADNAEESEAEEFEQETG
        MLQFP  MTQ+P ST+TIP S+LLP QWPQPQNEE+LLAMEE++FEEKCNEIRK +  L VIGK   +N++E  D EAEDDDADNAEES+ EEFEQETG
Subjt:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKE--DIEAEDDDADNAEESEAEEFEQETG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATGGGTTAAAACAGAGCAGGGTCAAACCTCGAACCGCAATAGGAACAGAAATAAACCAGTTGCCAAACACCAGACATTTTCGAATTCCGCAACGGAGCGAGCTCAT
TCGTCTCTCTCTCTCTCTCCAGTTTCCAGCTCCGGCGACAAAAATGCTGCAGTTTCCGGCTTTCATGACACAGTACCCTTGGTCTACAAGGACAATTCCCACGTCGTTTT
TACTGCCGTCTCAGTGGCCACAACCCCAAAACGAAGAGCTACTGCTCGCCATGGAAGAGTCTGATTTTGAAGAAAAGTGCAATGAAATTAGGAAGACAAACAGCAACCTG
GTTGTCATTGGCAAAATGACTGCTGACAATGATAAGGAAGACATAGAGGCAGAAGATGATGATGCTGACAATGCTGAGGAATCCGAGGCTGAAGAATTCGAGCAGGAAAC
TGGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCATGGGTTAAAACAGAGCAGGGTCAAACCTCGAACCGCAATAGGAACAGAAATAAACCAGTTGCCAAACACCAGACATTTTCGAATTCCGCAACGGAGCGAGCTCAT
TCGTCTCTCTCTCTCTCTCCAGTTTCCAGCTCCGGCGACAAAAATGCTGCAGTTTCCGGCTTTCATGACACAGTACCCTTGGTCTACAAGGACAATTCCCACGTCGTTTT
TACTGCCGTCTCAGTGGCCACAACCCCAAAACGAAGAGCTACTGCTCGCCATGGAAGAGTCTGATTTTGAAGAAAAGTGCAATGAAATTAGGAAGACAAACAGCAACCTG
GTTGTCATTGGCAAAATGACTGCTGACAATGATAAGGAAGACATAGAGGCAGAAGATGATGATGCTGACAATGCTGAGGAATCCGAGGCTGAAGAATTCGAGCAGGAAAC
TGGTTAATATGCATCTTTATTTCCTTTCCTGTCTTTACTCTTCAGAATCCTCAATTTACTAGTTTTTTTCTGTTTGTTAACTACCGTTATAGCTTCAAATTTATGTGCCT
CTTGAGCCGATGTTTCTTTCTTACTTTGTGTTAAAAGTTATTGTTATTGTATTTTCCACTCCATTTGCTTTTAACCAATTGAAAATCTTCCCTTTTATGAATATTACAGA
ATAATGTGTATATATATATATTTATATGTAAATAAGCGCTATGTGATCATAGTATTTTAGAGCA
Protein sequenceShow/hide protein sequence
MHGLKQSRVKPRTAIGTEINQLPNTRHFRIPQRSELIRLSLSLQFPAPATKMLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNL
VVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG