CuGenDBv2

Gene ID	CaUC01G017080
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic
Genome location	Ciama_Chr01:30465913..30466615
RNA-Seq Expression	CaUC01G017080
Synteny	CaUC01G017080
Gene Ontology terms	GO:0019684 - photosynthesis, light reaction (biological process) GO:0005886 - plasma membrane (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0048038 - quinone binding (molecular function) GO:0050136 - NADH dehydrogenase (quinone) activity (molecular function) GO:0051287 - NAD binding (molecular function)
InterPro domains	IPR001135 - NADH-quinone oxidoreductase, subunit D IPR022885 - NAD(P)H-quinone oxidoreductase subunit D/H IPR029014 - [NiFe]-hydrogenase, large subunit

Homology

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GenBank top hits

e value

%identity

Alignment

YP_009317442.1 NADH dehydrogenase subunit 7 [Coccinia grandis]

2.5e-23

94.92

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Query:  VQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIPEGPYENLEIRSFDRGRSPEWNDYE
        VQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIP GPYENLEIRSFDRGRSPEWND++
Subjt:  VQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIPEGPYENLEIRSFDRGRSPEWNDYE

YP_009326046.1 NADH dehydrogenase subunit 7 [Citrullus lanatus]

2.5e-23

94.92

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Query:  VQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIPEGPYENLEIRSFDRGRSPEWNDYE
        VQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIP GPYENLEIRSFDRGRSPEWND++
Subjt:  VQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIPEGPYENLEIRSFDRGRSPEWNDYE

YP_009420851.1 NADH dehydrogenase subunit 7 [Citrullus colocynthis]

2.5e-23

94.92

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Query:  VQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIPEGPYENLEIRSFDRGRSPEWNDYE
        VQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIP GPYENLEIRSFDRGRSPEWND++
Subjt:  VQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIPEGPYENLEIRSFDRGRSPEWNDYE

YP_009753137.1 NADH dehydrogenase subunit H [Corallocarpus boehmii]

7.4e-23

93.22

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Query:  VQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIPEGPYENLEIRSFDRGRSPEWNDYE
        VQWQKEGDSLARYLVRL EMTESVKIIQQALEGIP GPYENLEIRSFDRGRSPEWND++
Subjt:  VQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIPEGPYENLEIRSFDRGRSPEWNDYE

YP_010131142.1 NADH-plastoquinone oxidoreductase subunit 7 [Benincasa hispida]

7.4e-23

93.22

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Query:  VQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIPEGPYENLEIRSFDRGRSPEWNDYE
        VQWQKEGDSLARY VRLAEMTESVKIIQQALEGIP GPYENLEIRSFDRGRSPEWND++
Subjt:  VQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIPEGPYENLEIRSFDRGRSPEWNDYE

TrEMBL top hits

e value

%identity

Alignment

A0A1P8LE44 NADH-quinone oxidoreductase subunit D

1.2e-23

94.92

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Query:  VQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIPEGPYENLEIRSFDRGRSPEWNDYE
        VQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIP GPYENLEIRSFDRGRSPEWND++
Subjt:  VQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIPEGPYENLEIRSFDRGRSPEWNDYE

A0A1P8LEK8 NADH-quinone oxidoreductase subunit D

1.2e-23

94.92

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Query:  VQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIPEGPYENLEIRSFDRGRSPEWNDYE
        VQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIP GPYENLEIRSFDRGRSPEWND++
Subjt:  VQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIPEGPYENLEIRSFDRGRSPEWNDYE

A0A2I6C0C5 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

1.2e-23

94.92

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Query:  VQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIPEGPYENLEIRSFDRGRSPEWNDYE
        VQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIP GPYENLEIRSFDRGRSPEWND++
Subjt:  VQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIPEGPYENLEIRSFDRGRSPEWNDYE

A0A2Z2CGA8 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

1.2e-23

94.92

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Query:  VQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIPEGPYENLEIRSFDRGRSPEWNDYE
        VQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIP GPYENLEIRSFDRGRSPEWND++
Subjt:  VQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIPEGPYENLEIRSFDRGRSPEWNDYE

A0A343A8G8 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

1.2e-23

94.92

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Query:  VQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIPEGPYENLEIRSFDRGRSPEWNDYE
        VQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIP GPYENLEIRSFDRGRSPEWND++
Subjt:  VQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIPEGPYENLEIRSFDRGRSPEWNDYE

SwissProt top hits

e value

%identity

Alignment

A0ZZ91 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

9.0e-24

84.75

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Query:  VQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIPEGPYENLEIRSFDRGRSPEWNDYE
        +QWQKEGDSLARYLVR++EMTES+KIIQQALEGIP GPYENLEIR FDR R PEWND+E
Subjt:  VQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIPEGPYENLEIRSFDRGRSPEWNDYE

B5LMS0 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

2.6e-23

84.75

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Query:  VQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIPEGPYENLEIRSFDRGRSPEWNDYE
        VQWQKEGDSLARYLVR+ EM ES+KIIQQALEGIP GPYENLEIRSFDR + PEWND+E
Subjt:  VQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIPEGPYENLEIRSFDRGRSPEWNDYE

Q09WW2 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

2.0e-23

84.75

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Query:  VQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIPEGPYENLEIRSFDRGRSPEWNDYE
        VQWQKEGDSLARYLVR+ EMTES+KIIQQALEGIP GPYENLEIR FDR R+PEWND++
Subjt:  VQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIPEGPYENLEIRSFDRGRSPEWNDYE

Q2L953 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

9.0e-24

84.75

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Query:  VQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIPEGPYENLEIRSFDRGRSPEWNDYE
        +QWQKEGDSLARYLVR++EMTES+KIIQQALEGIP GPYENLEIR FDR R PEWND+E
Subjt:  VQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIPEGPYENLEIRSFDRGRSPEWNDYE

Q4VZL2 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

1.6e-25

93.22

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Query:  VQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIPEGPYENLEIRSFDRGRSPEWNDYE
        VQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIP GPYENLEIRSFDR RSPEWND++
Subjt:  VQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIPEGPYENLEIRSFDRGRSPEWNDYE

Arabidopsis top hits

e value

%identity

Alignment

ATCG01110.1 NAD(P)H dehydrogenase subunit H

4.2e-24

81.36

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Query:  VQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIPEGPYENLEIRSFDRGRSPEWNDYE
        +QWQK+GDSLARYLVRL+EMTES+KIIQQALEG+P GPYENLE R FDR R+PEWND+E
Subjt:  VQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIPEGPYENLEIRSFDRGRSPEWNDYE

Sequences

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CDS sequence

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ATGTGCGTTCAGTGGCAAAAAGAAGGAGATTCATTAGCTCGTTATTTAGTCAGACTTGCTGAGATGACGGAATCCGTAAAAATTATTCAACAAGCTTTGGAAGGAATTCC
AGAGGGACCTTATGAAAATTTAGAAATACGATCTTTTGATCGAGGAAGGTCTCCGGAATGGAATGACTACGAAAAACAGAAATAA

mRNA sequence

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ATGTGCGTTCAGTGGCAAAAAGAAGGAGATTCATTAGCTCGTTATTTAGTCAGACTTGCTGAGATGACGGAATCCGTAAAAATTATTCAACAAGCTTTGGAAGGAATTCC
AGAGGGACCTTATGAAAATTTAGAAATACGATCTTTTGATCGAGGAAGGTCTCCGGAATGGAATGACTACGAAAAACAGAAATAA

Protein sequence

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MCVQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIPEGPYENLEIRSFDRGRSPEWNDYEKQK

CaUC01G017080 (gene) of Watermelon (USVL246-FR2) v1 genome