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CaUC01G017900 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC01G017900
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionvegetative cell wall protein gp1-like
Genome locationCiama_Chr01:31326215..31326715
RNA-Seq ExpressionCaUC01G017900
SyntenyCaUC01G017900
Gene Ontology termsNA
InterPro domainsIPR044959 - Classical arabinogalactan protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036330.1 hypothetical protein E6C27_scaffold18G001290 [Cucumis melo var. makuwa]1.1e-5486.14Show/hide
Query:  MGFSGVRFVVIFALLTRLCMAQAPAPAPGSSQPLTPPPATPAPSPVALPPSPTPTPNRAPSPSPAPASPSPAPGAPSPAPAAPAPAPATTAPTPAPSSSP
        MGFSGVRFVVIFALLTRLCMAQAP PAPGS QPLTPP ATPAPSPV LPPSPTPTPNRAPSPSP P SPSPAP APSPAP  PAPAPA  APTP P S+P
Subjt:  MGFSGVRFVVIFALLTRLCMAQAPAPAPGSSQPLTPPPATPAPSPVALPPSPTPTPNRAPSPSPAPASPSPAPGAPSPAPAAPAPAPATTAPTPAPSSSP

Query:  TPSGSPTGGPVVPPIASPPSPTGIEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA
        TPS    GGPVVPPIASPPSPTGIEVPSPAPQ P ADNPAGAASHIGGAAT GIA+AGTLFAVIL+
Subjt:  TPSGSPTGGPVVPPIASPPSPTGIEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA

XP_022950235.1 vegetative cell wall protein gp1-like [Cucurbita moschata]2.3e-3667.6Show/hide
Query:  MGFSGVRFVVIFALLTRLCMAQAPAPAPG----SSQPLTPPPATPAPSPVALPPSPTPTPNRAPSPSPAPASPSPAPGAPSPAPA---------APAPAP
        MG SGVR VVIFAL+  LC AQAPAP P     S +P+ P PATPAPSPVA PPSP+ +P RAPSPSP  ASPSPA  APSPAP+         AP P+P
Subjt:  MGFSGVRFVVIFALLTRLCMAQAPAPAPG----SSQPLTPPPATPAPSPVALPPSPTPTPNRAPSPSPAPASPSPAPGAPSPAPA---------APAPAP

Query:  ATTAPTPAPSSSPTPSGSPTGGPVVPPIASPPSPTGIEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA
        AT+APTPAPSS P PSGSP G PVVPPIASPPSP+  + PSP P+APAAD+PAGAASHIGGA T GIA+AGTL A+++A
Subjt:  ATTAPTPAPSSSPTPSGSPTGGPVVPPIASPPSPTGIEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA

XP_022978568.1 vegetative cell wall protein gp1-like [Cucurbita maxima]3.2e-3869.71Show/hide
Query:  MGFSGVRFVVIFALLTRLCMAQAPAPAPGSSQPLTPPPATPAPSPVALPPSPTPTPNRAPSPSPAPASPSPAPGAPSPAPA---------APAPAPATTA
        MGFSGVR VVIFAL+  LC AQAPAPA  S +P+ P PATPAPSPVA PPSP+ +P RAPSPSP  ASPSPA  APSPAP+         AP P+PAT+A
Subjt:  MGFSGVRFVVIFALLTRLCMAQAPAPAPGSSQPLTPPPATPAPSPVALPPSPTPTPNRAPSPSPAPASPSPAPGAPSPAPA---------APAPAPATTA

Query:  PTPAPSSSPTPSGSPTGGPVVPPIASPPSPTGIEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA
        PTPAPSS P PSGSP G PVVPPIASPPSP+  + PSP P+APAAD+PAGAASHIGGA T GIA+AGTL A+++A
Subjt:  PTPAPSSSPTPSGSPTGGPVVPPIASPPSPTGIEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA

XP_023544207.1 vegetative cell wall protein gp1-like [Cucurbita pepo subsp. pepo]7.2e-3868.72Show/hide
Query:  MGFSGVRFVVIFALLTRLCMAQAPAPAPG----SSQPLTPPPATPAPSPVALPPSPTPTPNRAPSPSPAPASPSPAPGAPSPAPA---------APAPAP
        MGFSGVR VVIFAL+  LCMAQAPAP P     S +P+ P PATPAPSPVA PP+P+ +P RAPSPSP  ASPSPA  APSPAP+         AP P+P
Subjt:  MGFSGVRFVVIFALLTRLCMAQAPAPAPG----SSQPLTPPPATPAPSPVALPPSPTPTPNRAPSPSPAPASPSPAPGAPSPAPA---------APAPAP

Query:  ATTAPTPAPSSSPTPSGSPTGGPVVPPIASPPSPTGIEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA
        AT+APTPAPSS P PSGSP G PVVPPIASPPSP+  E PSP P+APAAD+PAGAASHIGGA T GIA+AGTL A+++A
Subjt:  ATTAPTPAPSSSPTPSGSPTGGPVVPPIASPPSPTGIEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA

XP_038881138.1 vegetative cell wall protein gp1-like [Benincasa hispida]6.5e-5590.36Show/hide
Query:  MGFSGVRFVVIFALLTRLCMAQAPAPAPGSSQPLTPPPATPAPSPVALPPSPTPTPNRAPSPSPAPASPSPAPGAPSPAPAAPAPAPATTAPTPAPSSSP
        MGFSGVR+VVIFALLTRLCMAQAPAPAPGSSQPL P P TPAPSPV  PPSPTPTPNRAPS SPAPASPSPAP APSPAPA PAPAPATTAPTPAPSSS 
Subjt:  MGFSGVRFVVIFALLTRLCMAQAPAPAPGSSQPLTPPPATPAPSPVALPPSPTPTPNRAPSPSPAPASPSPAPGAPSPAPAAPAPAPATTAPTPAPSSSP

Query:  TPSGSPTGGPVVPPIASPPSPTGIEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA
        TPS    GGPVVPPIASPPSPTGIEVPS APQAPAADNPAGAASHIGGAA FGIAVAGTLFAVILA
Subjt:  TPSGSPTGGPVVPPIASPPSPTGIEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA

TrEMBL top hitse value%identityAlignment
A0A0A0KG74 Uncharacterized protein1.5e-4980.72Show/hide
Query:  MGFSGVRFVVIFALLTRLCMAQAPAPAPGSSQPLTPPPATPAPSPVALPPSPTPTPNRAPSPSPAPASPSPAPGAPSPAPAAPAPAPATTAPTPAPSSSP
        MGFSGVRFV+IFALLTRLCMAQAPAPAPGS QPLTPP ATPAPSPV LPPSPTPTPNRAPSPSP P SPSPAP A S       PAPA  APTP P S+P
Subjt:  MGFSGVRFVVIFALLTRLCMAQAPAPAPGSSQPLTPPPATPAPSPVALPPSPTPTPNRAPSPSPAPASPSPAPGAPSPAPAAPAPAPATTAPTPAPSSSP

Query:  TPSGSPTGGPVVPPIASPPSPTGIEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA
        TPS    GGPV+PPIASPPSPTG+EVPSPAPQ PAADNPAGA SHIGGAAT GIA+AGTLF VIL+
Subjt:  TPSGSPTGGPVVPPIASPPSPTGIEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA

A0A5D3CNQ6 Uncharacterized protein5.4e-5586.14Show/hide
Query:  MGFSGVRFVVIFALLTRLCMAQAPAPAPGSSQPLTPPPATPAPSPVALPPSPTPTPNRAPSPSPAPASPSPAPGAPSPAPAAPAPAPATTAPTPAPSSSP
        MGFSGVRFVVIFALLTRLCMAQAP PAPGS QPLTPP ATPAPSPV LPPSPTPTPNRAPSPSP P SPSPAP APSPAP  PAPAPA  APTP P S+P
Subjt:  MGFSGVRFVVIFALLTRLCMAQAPAPAPGSSQPLTPPPATPAPSPVALPPSPTPTPNRAPSPSPAPASPSPAPGAPSPAPAAPAPAPATTAPTPAPSSSP

Query:  TPSGSPTGGPVVPPIASPPSPTGIEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA
        TPS    GGPVVPPIASPPSPTGIEVPSPAPQ P ADNPAGAASHIGGAAT GIA+AGTLFAVIL+
Subjt:  TPSGSPTGGPVVPPIASPPSPTGIEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA

A0A6J1GF55 vegetative cell wall protein gp1-like1.1e-3667.6Show/hide
Query:  MGFSGVRFVVIFALLTRLCMAQAPAPAPG----SSQPLTPPPATPAPSPVALPPSPTPTPNRAPSPSPAPASPSPAPGAPSPAPA---------APAPAP
        MG SGVR VVIFAL+  LC AQAPAP P     S +P+ P PATPAPSPVA PPSP+ +P RAPSPSP  ASPSPA  APSPAP+         AP P+P
Subjt:  MGFSGVRFVVIFALLTRLCMAQAPAPAPG----SSQPLTPPPATPAPSPVALPPSPTPTPNRAPSPSPAPASPSPAPGAPSPAPA---------APAPAP

Query:  ATTAPTPAPSSSPTPSGSPTGGPVVPPIASPPSPTGIEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA
        AT+APTPAPSS P PSGSP G PVVPPIASPPSP+  + PSP P+APAAD+PAGAASHIGGA T GIA+AGTL A+++A
Subjt:  ATTAPTPAPSSSPTPSGSPTGGPVVPPIASPPSPTGIEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA

A0A6J1ITI1 vegetative cell wall protein gp1-like1.6e-3869.71Show/hide
Query:  MGFSGVRFVVIFALLTRLCMAQAPAPAPGSSQPLTPPPATPAPSPVALPPSPTPTPNRAPSPSPAPASPSPAPGAPSPAPA---------APAPAPATTA
        MGFSGVR VVIFAL+  LC AQAPAPA  S +P+ P PATPAPSPVA PPSP+ +P RAPSPSP  ASPSPA  APSPAP+         AP P+PAT+A
Subjt:  MGFSGVRFVVIFALLTRLCMAQAPAPAPGSSQPLTPPPATPAPSPVALPPSPTPTPNRAPSPSPAPASPSPAPGAPSPAPA---------APAPAPATTA

Query:  PTPAPSSSPTPSGSPTGGPVVPPIASPPSPTGIEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA
        PTPAPSS P PSGSP G PVVPPIASPPSP+  + PSP P+APAAD+PAGAASHIGGA T GIA+AGTL A+++A
Subjt:  PTPAPSSSPTPSGSPTGGPVVPPIASPPSPTGIEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA

A0A6J1KP28 classical arabinogalactan protein 4-like1.2e-1753.01Show/hide
Query:  MGFSGVRFVVIFALLTRLCMAQAPAPAPGSSQPLTPPPATPAPSPVALPPSPTPTPNRAPSPSPAPASPSPAPGAPSPAPAAPAPAPATTAPTPAPSSSP
        MGFSGVRF+++ ALL   CMAQAPAP              PAP+P   P  P P         PAPA+P     APS +PA+P PAP T+ PTPAP    
Subjt:  MGFSGVRFVVIFALLTRLCMAQAPAPAPGSSQPLTPPPATPAPSPVALPPSPTPTPNRAPSPSPAPASPSPAPGAPSPAPAAPAPAPATTAPTPAPSSSP

Query:  TPSGSPTGGPVVPPIASPPSPTGIEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA
        TPSGSP GGPVVP +ASP        PS AP+ P ADNP GAAS IG A T G+AVAG+L AV+LA
Subjt:  TPSGSPTGGPVVPPIASPPSPTGIEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA

SwissProt top hitse value%identityAlignment
O10341 Uncharacterized 29.3 kDa protein9.3e-0444.22Show/hide
Query:  PAPAPGSSQPLTPPPA---TPAPSPVALP-PSPTPTPNRAPSPSPAPA-SPSPAPG---APSPAPAAPAPAPATTAPTPAPSSSPTPSGSPTGGPVVPPI
        P P P  +   TP PA   TP PSP   P PSPTPTP+  PSP+P+P  +PSP P     PSP P +P P P+ T PTP+P+ SPTPS +PT  P   P 
Subjt:  PAPAPGSSQPLTPPPA---TPAPSPVALP-PSPTPTPNRAPSPSPAPA-SPSPAPG---APSPAPAAPAPAPATTAPTPAPSSSPTPSGSPTGGPVVPPI

Query:  ASP---PSPTGIEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGT
         +P   PSPT    P+P+P  P +  P  + S +G    F  +V  T
Subjt:  ASP---PSPTGIEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGT

Q9FPQ6 Vegetative cell wall protein gp17.1e-0449.19Show/hide
Query:  PAPAPGS-SQPLTPPPATPAPSPVALPPSPTP--TPNRAPSPSPAPASPSPAPGAPSPAPAAPA----PAPATTAPTPAPSSSPTPSGSPTGGPVVPPIA
        P+P+P S + PL P PA P+PSP  +PPSP+P   P+ AP PSP P SPSP P  PSPAP +PA    P+PA  +P P    SP P   P+  P  PP  
Subjt:  PAPAPGS-SQPLTPPPATPAPSPVALPPSPTP--TPNRAPSPSPAPASPSPAPGAPSPAPAAPA----PAPATTAPTPAPSSSPTPSGSPTGGPVVPPIA

Query:  SPPSPTGIEVPSPAPQAPAADNPA
        +PPSP+    PSP P +PA  +PA
Subjt:  SPPSPTGIEVPSPAPQAPAADNPA

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATTCTCGGGGGTTCGATTCGTTGTGATTTTTGCTTTGTTGACGAGGTTATGTATGGCTCAGGCTCCAGCGCCGGCACCGGGTTCTTCACAGCCTCTAACTCCGCC
ACCAGCCACTCCGGCGCCTTCTCCGGTGGCTCTCCCTCCATCTCCGACTCCGACGCCGAACAGAGCACCATCGCCTTCACCGGCTCCCGCGTCGCCCTCACCCGCTCCTG
GAGCTCCGTCACCGGCCCCAGCAGCTCCTGCCCCTGCTCCGGCAACTACTGCTCCTACCCCAGCTCCAAGCTCCAGTCCTACTCCTTCGGGATCTCCCACCGGTGGTCCT
GTAGTTCCACCCATTGCTTCTCCTCCTTCACCCACCGGAATCGAGGTGCCTTCACCTGCACCCCAAGCACCGGCGGCCGACAACCCAGCTGGAGCAGCGTCACACATCGG
TGGAGCGGCGACATTCGGAATCGCTGTTGCTGGAACTCTGTTCGCAGTGATTTTAGCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGATTCTCGGGGGTTCGATTCGTTGTGATTTTTGCTTTGTTGACGAGGTTATGTATGGCTCAGGCTCCAGCGCCGGCACCGGGTTCTTCACAGCCTCTAACTCCGCC
ACCAGCCACTCCGGCGCCTTCTCCGGTGGCTCTCCCTCCATCTCCGACTCCGACGCCGAACAGAGCACCATCGCCTTCACCGGCTCCCGCGTCGCCCTCACCCGCTCCTG
GAGCTCCGTCACCGGCCCCAGCAGCTCCTGCCCCTGCTCCGGCAACTACTGCTCCTACCCCAGCTCCAAGCTCCAGTCCTACTCCTTCGGGATCTCCCACCGGTGGTCCT
GTAGTTCCACCCATTGCTTCTCCTCCTTCACCCACCGGAATCGAGGTGCCTTCACCTGCACCCCAAGCACCGGCGGCCGACAACCCAGCTGGAGCAGCGTCACACATCGG
TGGAGCGGCGACATTCGGAATCGCTGTTGCTGGAACTCTGTTCGCAGTGATTTTAGCGTAG
Protein sequenceShow/hide protein sequence
MGFSGVRFVVIFALLTRLCMAQAPAPAPGSSQPLTPPPATPAPSPVALPPSPTPTPNRAPSPSPAPASPSPAPGAPSPAPAAPAPAPATTAPTPAPSSSPTPSGSPTGGP
VVPPIASPPSPTGIEVPSPAPQAPAADNPAGAASHIGGAATFGIAVAGTLFAVILA