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CaUC01G025330 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC01G025330
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
Genome locationCiama_Chr01:37185836..37190503
RNA-Seq ExpressionCaUC01G025330
SyntenyCaUC01G025330
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GEV48492.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Tanacetum cinerariifolium]3.1e-1289.13Show/hide
Query:  LLVEPLEWNEIRISGDLSSPLTRNRLSLFRRLLPNGIIVRFLPQSS
        LLVEPLEWNEIRISGDLSSPLTRNRLSL RRLLPNGII R +P+SS
Subjt:  LLVEPLEWNEIRISGDLSSPLTRNRLSLFRRLLPNGIIVRFLPQSS

GEW51832.1 xanthoxin dehydrogenase-like [Tanacetum cinerariifolium]8.6e-1088.1Show/hide
Query:  LLVEPLEWNEIRISGDLSSPLTRNRLSLFRRLLPNGIIVRFL
        LLVEPLEWNEIRISGDLSSP TRNRLSL RRLLPNGII R +
Subjt:  LLVEPLEWNEIRISGDLSSPLTRNRLSLFRRLLPNGIIVRFL

KAC9261800.1 hypothetical protein E3N88_46080 [Mikania micrantha]3.1e-2087.5Show/hide
Query:  LLVEPLEWNEIRISGDLSSPLTRNRLSLFRRLLPNGIIVRFLPQSSKKTDFSYSSFSFRIGLSL
        LLVEPLEWNEIRISGDLSSPLTRNRLSL RRLLPNGII R +P+SSKKTD SYS FSFRIG SL
Subjt:  LLVEPLEWNEIRISGDLSSPLTRNRLSLFRRLLPNGIIVRFLPQSSKKTDFSYSSFSFRIGLSL

KAG5398163.1 hypothetical protein IGI04_019977 [Brassica rapa subsp. trilocularis]8.8e-1576.92Show/hide
Query:  LLVEPLEWNEIRISGDLSSPLTRNRLSLFRRLLPNGIIVRFLPQSSKKTDFSYSSFSFRIGLSLV
        LLVEPLEWN IRISGDLSSPLTR RLSL RRLLPNGIIVR+ P+SSKKTD   SSF  R  L L+
Subjt:  LLVEPLEWNEIRISGDLSSPLTRNRLSLFRRLLPNGIIVRFLPQSSKKTDFSYSSFSFRIGLSLV

TrEMBL top hitse value%identityAlignment
A0A5N6L800 Uncharacterized protein1.5e-2087.5Show/hide
Query:  LLVEPLEWNEIRISGDLSSPLTRNRLSLFRRLLPNGIIVRFLPQSSKKTDFSYSSFSFRIGLSL
        LLVEPLEWNEIRISGDLSSPLTRNRLSL RRLLPNGII R +P+SSKKTD SYS FSFRIG SL
Subjt:  LLVEPLEWNEIRISGDLSSPLTRNRLSLFRRLLPNGIIVRFLPQSSKKTDFSYSSFSFRIGLSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGTGAGCTTTAAGCTGATTGTCATGGGAGTTTATGGCCTAAGAAGCATAGACACTAATGAGGGACATTTACATGTGGTGGTGAAACCAACCAAGATGTAT
GTGGTCCGTCCCGACCTCAGACTCTTTCTTCCCGACCTATTTGACCCTCTAGCCGCTTTATTGGTCGAGCCACTGGAATGGAATGAGATAAGAATCTCTGGAGAT
CTTTCCTCTCCACTTACTCGTAACAGACTTTCCCTATTTAGAAGACTTCTTCCGAATGGCATAATTGTCCGATTTCTTCCTCAATCTTCAAAGAAGACTGATTTC
TCCTACTCCTCCTTCTCCTTTAGGATAGGATTGTCATTGGTTGCTGAGATTGGGACGAGCGGATCTGGGTGGCCTGCACGTCGGACGGTGAGCGGCAGATCAAGG
CTCAGGGCGGCGCGAATCAGGGCAGTCGTTCGACGGTGTCTGCGGCGGGGCAAACAGGGGTTGCTGGGTTCAAGCAGACCTGGACGGCGGGAAATCCACGGAGCA
GATCGCCGGCACGGTCTGAGCAGGGCGGCGGCGCGAACCTTCACTGAGCAGGGCCGTGCAGTTGTCGGCGGTCGTCGACGTATGGCTGGACTCAAATCTTCTGGA
ATCCATTTTGTGTCGTTCATGGTTATGCAAGTCCAATTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAGTGAGCTTTAAGCTGATTGTCATGGGAGTTTATGGCCTAAGAAGCATAGACACTAATGAGGGACATTTACATGTGGTGGTGAAACCAACCAAGATGTAT
GTGGTCCGTCCCGACCTCAGACTCTTTCTTCCCGACCTATTTGACCCTCTAGCCGCTTTATTGGTCGAGCCACTGGAATGGAATGAGATAAGAATCTCTGGAGAT
CTTTCCTCTCCACTTACTCGTAACAGACTTTCCCTATTTAGAAGACTTCTTCCGAATGGCATAATTGTCCGATTTCTTCCTCAATCTTCAAAGAAGACTGATTTC
TCCTACTCCTCCTTCTCCTTTAGGATAGGATTGTCATTGGTTGCTGAGATTGGGACGAGCGGATCTGGGTGGCCTGCACGTCGGACGGTGAGCGGCAGATCAAGG
CTCAGGGCGGCGCGAATCAGGGCAGTCGTTCGACGGTGTCTGCGGCGGGGCAAACAGGGGTTGCTGGGTTCAAGCAGACCTGGACGGCGGGAAATCCACGGAGCA
GATCGCCGGCACGGTCTGAGCAGGGCGGCGGCGCGAACCTTCACTGAGCAGGGCCGTGCAGTTGTCGGCGGTCGTCGACGTATGGCTGGACTCAAATCTTCTGGA
ATCCATTTTGTGTCGTTCATGGTTATGCAAGTCCAATTGTGA
Protein sequenceShow/hide protein sequence
MQVSFKLIVMGVYGLRSIDTNEGHLHVVVKPTKMYVVRPDLRLFLPDLFDPLAALLVEPLEWNEIRISGDLSSPLTRNRLSLFRRLLPNGIIVRFLPQSSKKTDF
SYSSFSFRIGLSLVAEIGTSGSGWPARRTVSGRSRLRAARIRAVVRRCLRRGKQGLLGSSRPGRREIHGADRRHGLSRAAARTFTEQGRAVVGGRRRMAGLKSSG
IHFVSFMVMQVQL