; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC02G028060 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC02G028060
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Description50S ribosomal subunit assembly factor BipA
Genome locationCiama_Chr02:2410054..2411970
RNA-Seq ExpressionCaUC02G028060
SyntenyCaUC02G028060
Gene Ontology termsGO:0006414 - translational elongation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:1990904 - ribonucleoprotein complex (cellular component)
GO:0003746 - translation elongation factor activity (molecular function)
GO:0003924 - GTPase activity (molecular function)
GO:0005525 - GTP binding (molecular function)
InterPro domainsIPR042116 - GTP-binding protein TypA/BipA, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589143.1 hypothetical protein SDJN03_17708, partial [Cucurbita argyrosperma subsp. sororia]1.1e-5396.55Show/hide
Query:  MGYGAITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVRAKELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKK
        MGYGAITSHALMSLEARGTLFVNPGME YDGMIIGEHSRDSDLDVNPVR KELTNVRAA KDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKK
Subjt:  MGYGAITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVRAKELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKK

Query:  YLDVNKRKAMSKKPKE
        YL+VNKRKAMSKKPKE
Subjt:  YLDVNKRKAMSKKPKE

XP_022135995.1 uncharacterized protein LOC111007804 [Momordica charantia]2.3e-5496.55Show/hide
Query:  MGYGAITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVRAKELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKK
        MGYGAITSHALMSLE RGTLFVNPGME YDGMIIGEHSRDSDLDVNPVR KELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKK
Subjt:  MGYGAITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVRAKELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKK

Query:  YLDVNKRKAMSKKPKE
        YLDVNKRKAMSK+PKE
Subjt:  YLDVNKRKAMSKKPKE

XP_022930818.1 uncharacterized protein LOC111437186 [Cucurbita moschata]1.1e-5396.55Show/hide
Query:  MGYGAITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVRAKELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKK
        MGYGAITSHALMSLEARGTLFVNPGME YDGMIIGEHSRDSDLDVNPVR KELTNVRAA KDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKK
Subjt:  MGYGAITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVRAKELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKK

Query:  YLDVNKRKAMSKKPKE
        YL+VNKRKAMSKKPKE
Subjt:  YLDVNKRKAMSKKPKE

XP_022988705.1 uncharacterized protein LOC111485959 [Cucurbita maxima]1.7e-5496.55Show/hide
Query:  MGYGAITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVRAKELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKK
        MGYGAITSHALMSLEARGTLFVNPGME YDGMIIGEHSRDSDLDVNPVR KELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKK
Subjt:  MGYGAITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVRAKELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKK

Query:  YLDVNKRKAMSKKPKE
        YL+VNKRKAMSK+PKE
Subjt:  YLDVNKRKAMSKKPKE

XP_038888763.1 50S ribosomal subunit assembly factor BipA [Benincasa hispida]2.0e-5598.28Show/hide
Query:  MGYGAITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVRAKELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKK
        MGYG ITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVR KELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKK
Subjt:  MGYGAITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVRAKELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKK

Query:  YLDVNKRKAMSKKPKE
        YLDVNKRKAMSKKPKE
Subjt:  YLDVNKRKAMSKKPKE

TrEMBL top hitse value%identityAlignment
A0A1R3IK62 EFG_C domain-containing protein7.1e-5493.97Show/hide
Query:  MGYGAITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVRAKELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKK
        MGYG ITSHALMSLEARGTLFV PGMETYDGMI+GEHSRD+DLDVNPVR KELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRK+
Subjt:  MGYGAITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVRAKELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKK

Query:  YLDVNKRKAMSKKPKE
        YLDVNKRKAMSK+PKE
Subjt:  YLDVNKRKAMSKKPKE

A0A5A7UZY6 GTP-binding protein TypA/BipA-like protein1.2e-5395.69Show/hide
Query:  MGYGAITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVRAKELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKK
        MGYGAIT+HALMSLEARGTLFVNPGME YDGMIIGEHSRDSDLDVNPVR KELTNVRAA KDENVKLSPPRLM+LEEAIGYVASDELIEVTPKAIRLRKK
Subjt:  MGYGAITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVRAKELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKK

Query:  YLDVNKRKAMSKKPKE
        YLDVNKRKAMSKKPKE
Subjt:  YLDVNKRKAMSKKPKE

A0A6J1C2L9 uncharacterized protein LOC1110078041.1e-5496.55Show/hide
Query:  MGYGAITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVRAKELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKK
        MGYGAITSHALMSLE RGTLFVNPGME YDGMIIGEHSRDSDLDVNPVR KELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKK
Subjt:  MGYGAITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVRAKELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKK

Query:  YLDVNKRKAMSKKPKE
        YLDVNKRKAMSK+PKE
Subjt:  YLDVNKRKAMSKKPKE

A0A6J1EWG9 uncharacterized protein LOC1114371865.4e-5496.55Show/hide
Query:  MGYGAITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVRAKELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKK
        MGYGAITSHALMSLEARGTLFVNPGME YDGMIIGEHSRDSDLDVNPVR KELTNVRAA KDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKK
Subjt:  MGYGAITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVRAKELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKK

Query:  YLDVNKRKAMSKKPKE
        YL+VNKRKAMSKKPKE
Subjt:  YLDVNKRKAMSKKPKE

A0A6J1JKB6 uncharacterized protein LOC1114859598.4e-5596.55Show/hide
Query:  MGYGAITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVRAKELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKK
        MGYGAITSHALMSLEARGTLFVNPGME YDGMIIGEHSRDSDLDVNPVR KELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKK
Subjt:  MGYGAITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVRAKELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKK

Query:  YLDVNKRKAMSKKPKE
        YL+VNKRKAMSK+PKE
Subjt:  YLDVNKRKAMSKKPKE

SwissProt top hitse value%identityAlignment
O07631 50S ribosomal subunit assembly factor BipA1.0e-2549.57Show/hide
Query:  MGYGAITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVRAKELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKK
        M  G  TS+ +  +E RG +FV PG E Y+GMI+GEH+RD+DL VN  + K+ TNVR+A KD+   +   R+M+LEE++ Y+  DE  EVTP++IRLRKK
Subjt:  MGYGAITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVRAKELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKK

Query:  YLDVNKRKAMSKKPK
         L+ N+R+  +KK K
Subjt:  YLDVNKRKAMSKKPK

O25225 50S ribosomal subunit assembly factor BipA5.8e-2952.68Show/hide
Query:  MGYGAITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVRAKELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKK
        M  G  T+ +L +++ RGTLF+NP  + Y GM+IGEHSRD+DLDVNP+++K LTN+RA+  D+ +KL+PPR M LE A+ ++  DE++EVTP  +R+RKK
Subjt:  MGYGAITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVRAKELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKK

Query:  YLDVNKRKAMSK
         LD N RK   K
Subjt:  YLDVNKRKAMSK

P0A3B2 50S ribosomal subunit assembly factor BipA1.6e-2348.7Show/hide
Query:  GYGAITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVRAKELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKKY
        G G   + AL  L+ RG LF+  G E Y+G IIG HSR +DL VN +  K+LTN+RA+  DE V L PP  MTLE+A+ ++  DEL+EVTP +IR+RK++
Subjt:  GYGAITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVRAKELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKKY

Query:  LDVNKRKAMSKKPKE
        L  N R+  ++ PK+
Subjt:  LDVNKRKAMSKKPKE

P0A3B3 50S ribosomal subunit assembly factor BipA1.6e-2348.7Show/hide
Query:  GYGAITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVRAKELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKKY
        G G   + AL  L+ RG LF+  G E Y+G IIG HSR +DL VN +  K+LTN+RA+  DE V L PP  MTLE+A+ ++  DEL+EVTP +IR+RK++
Subjt:  GYGAITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVRAKELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKKY

Query:  LDVNKRKAMSKKPKE
        L  N R+  ++ PK+
Subjt:  LDVNKRKAMSKKPKE

Q9ZLZ3 50S ribosomal subunit assembly factor BipA2.2e-2851.79Show/hide
Query:  MGYGAITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVRAKELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKK
        M  G  T+ +L +++ RG LF+NP  + Y GM+IGEHSRD+DLDVNP+++K LTN+RA+  D+ +KL+PPR M LE A+ ++  DE++EVTP  +R+RKK
Subjt:  MGYGAITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVRAKELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKK

Query:  YLDVNKRKAMSK
         LD N RK   K
Subjt:  YLDVNKRKAMSK

Arabidopsis top hitse value%identityAlignment
AT2G31060.1 elongation factor family protein2.8e-4778.45Show/hide
Query:  MGYGAITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVRAKELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKK
        M  G IT+H+LMSLEARG LFV+PG+++YDGMIIGEHSR++DLD+NPV+AKELTN+R+A KDENVKLSPPRLMTLEEAIGYVASDELIEVTPK IRLRK+
Subjt:  MGYGAITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVRAKELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKK

Query:  YLDVNKRKAMSKKPKE
         LDVNKRK+ SK+ K+
Subjt:  YLDVNKRKAMSKKPKE

AT2G31060.2 elongation factor family protein2.8e-4778.45Show/hide
Query:  MGYGAITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVRAKELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKK
        M  G IT+H+LMSLEARG LFV+PG+++YDGMIIGEHSR++DLD+NPV+AKELTN+R+A KDENVKLSPPRLMTLEEAIGYVASDELIEVTPK IRLRK+
Subjt:  MGYGAITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVRAKELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKK

Query:  YLDVNKRKAMSKKPKE
         LDVNKRK+ SK+ K+
Subjt:  YLDVNKRKAMSKKPKE

AT2G31060.3 elongation factor family protein2.8e-4778.45Show/hide
Query:  MGYGAITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVRAKELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKK
        M  G IT+H+LMSLEARG LFV+PG+++YDGMIIGEHSR++DLD+NPV+AKELTN+R+A KDENVKLSPPRLMTLEEAIGYVASDELIEVTPK IRLRK+
Subjt:  MGYGAITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVRAKELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKK

Query:  YLDVNKRKAMSKKPKE
         LDVNKRK+ SK+ K+
Subjt:  YLDVNKRKAMSKKPKE

AT5G13650.1 elongation factor family protein2.0e-1643.75Show/hide
Query:  GAITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVRAKELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRK
        G  TS+AL S + RG +FV  G++ Y G I+G H R  DL +N  + K  TN+R+  KD  V L  P   +L++ I Y+  DEL+EVTP +IR+ K
Subjt:  GAITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVRAKELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRK

AT5G13650.2 elongation factor family protein2.0e-1643.75Show/hide
Query:  GAITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVRAKELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRK
        G  TS+AL S + RG +FV  G++ Y G I+G H R  DL +N  + K  TN+R+  KD  V L  P   +L++ I Y+  DEL+EVTP +IR+ K
Subjt:  GAITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVRAKELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATATGGAGCAATTACATCTCATGCTTTAATGAGTTTAGAAGCTCGAGGAACTCTTTTTGTGAATCCTGGAATGGAGACTTATGATGGAATGATTATTGGAGAACA
TTCTAGGGACTCGGATCTAGACGTTAATCCTGTAAGAGCTAAAGAACTAACCAATGTCCGTGCTGCCTGCAAGGATGAAAACGTGAAGCTATCTCCACCTCGACTTATGA
CTCTTGAAGAAGCGATAGGATACGTAGCATCTGACGAACTGATTGAGGTTACACCAAAGGCCATTCGTCTAAGAAAGAAATATTTGGATGTTAACAAGCGCAAGGCCATG
AGTAAGAAGCCCAAGGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGATATGGAGCAATTACATCTCATGCTTTAATGAGTTTAGAAGCTCGAGGAACTCTTTTTGTGAATCCTGGAATGGAGACTTATGATGGAATGATTATTGGAGAACA
TTCTAGGGACTCGGATCTAGACGTTAATCCTGTAAGAGCTAAAGAACTAACCAATGTCCGTGCTGCCTGCAAGGATGAAAACGTGAAGCTATCTCCACCTCGACTTATGA
CTCTTGAAGAAGCGATAGGATACGTAGCATCTGACGAACTGATTGAGGTTACACCAAAGGCCATTCGTCTAAGAAAGAAATATTTGGATGTTAACAAGCGCAAGGCCATG
AGTAAGAAGCCCAAGGAATGAACTACCTGGCTCAAACGATGCTTCTTAGCCTTAATTCCTTGTTTATGTTGGGTGTACTAAAAATGCCTGATCGAGGAATCAATATCGAA
CAAGTCTCGTTTCGATCATTCAAGCGTGCATCCACTACCATATCATATTCTTTTCAACCACCCAAGTTTAGGAGGGTCAGAAAAAAATAATACAATTTTTTTTTTCTCCT
TATATCATAGGCTAAACAAGTTTTATGTTTGATTTTTAGAGCTGAGGCTATTAAACTATAAGCATGTTGCGAGTTTTGATAACAAGTAGAGTAGAACAATTATTTCCCTC
TTGTATTTATTTGTTGGCCACTTTACGGATAAAGTATACCGACATAAGAGACCTACCATGTCAAGTAATAATTAATATCGAGAATTTATGACCTTGCAGGAAGAAAATAA
AGGTTTGTTTGGTTAGCAATCT
Protein sequenceShow/hide protein sequence
MGYGAITSHALMSLEARGTLFVNPGMETYDGMIIGEHSRDSDLDVNPVRAKELTNVRAACKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKKYLDVNKRKAM
SKKPKE