; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC02G028400 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC02G028400
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionPectin lyase-like superfamily protein
Genome locationCiama_Chr02:2732372..2732862
RNA-Seq ExpressionCaUC02G028400
SyntenyCaUC02G028400
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR000743 - Glycoside hydrolase, family 28
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059116.1 exopolygalacturonase-like [Cucumis melo var. makuwa]4.2e-6087.02Show/hide
Query:  MNTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVY
        MNTTNGVRIKTWPASPVAG ATNMHF DI MVNVSNPILIDQEYCPWNQCNRKIPSKIKI+KVSFKNIRGSSATP+AVKLICSS+LPC+EVKVANIDLVY
Subjt:  MNTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVY

Query:  NGKEGPITSQCMNVRPIISGIQNPQTCSSPY
        NG +G +TS+CMNV+PIISG QNP  CSS Y
Subjt:  NGKEGPITSQCMNVRPIISGIQNPQTCSSPY

XP_008455553.1 PREDICTED: exopolygalacturonase-like [Cucumis melo]4.2e-6087.02Show/hide
Query:  MNTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVY
        MNTTNGVRIKTWPASPVAG ATNMHF DI MVNVSNPILIDQEYCPWNQCNRKIPSKIKI+KVSFKNIRGSSATP+AVKLICSS+LPC+EVKVANIDLVY
Subjt:  MNTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVY

Query:  NGKEGPITSQCMNVRPIISGIQNPQTCSSPY
        NG +G +TS+CMNV+PIISG QNP  CSS Y
Subjt:  NGKEGPITSQCMNVRPIISGIQNPQTCSSPY

XP_038887126.1 LOW QUALITY PROTEIN: exopolygalacturonase-like [Benincasa hispida]2.9e-6189.47Show/hide
Query:  MNTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVY
        MNTTNGVRIKTW ASPVAGTA NMHF DI MVNVSNPILIDQEYCPWNQCNR I SKIKISKVSFKNI G+SATPMAVKL+CS DLPCDEVKV NIDLVY
Subjt:  MNTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVY

Query:  NGKEGPITSQCMNVRPIISGIQNPQTCSSPYVF
        NGKEG ITSQC NVRPII GIQNPQTCSSPYVF
Subjt:  NGKEGPITSQCMNVRPIISGIQNPQTCSSPYVF

XP_038887127.1 exopolygalacturonase-like [Benincasa hispida]1.3e-6693.28Show/hide
Query:  MNTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVY
        MNTTNGVRIKTWPASPVAGTATNMHF DIIMVNVS PILIDQEYCPWNQCNRKIPSKIKISKVSFKNI G+SATPMAVKL+CSSDLPCDEVK+ NIDLVY
Subjt:  MNTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVY

Query:  NGKEGPITSQCMNVRPIISGIQNPQTCSSPYVFP
        NGKEGPITSQC NVRPII GIQNPQTCSSPYVFP
Subjt:  NGKEGPITSQCMNVRPIISGIQNPQTCSSPYVFP

XP_038887188.1 exopolygalacturonase-like [Benincasa hispida]7.3e-6593.89Show/hide
Query:  MNTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVY
        MNTTNGVRIKTWPASPV+GTATNMHF DIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICS  LPCDEVKVANIDLVY
Subjt:  MNTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVY

Query:  NGKEGPITSQCMNVRPIISGIQNPQTCSSPY
        NGKEGPI S CMNV+PIISGIQNPQTCS PY
Subjt:  NGKEGPITSQCMNVRPIISGIQNPQTCSSPY

TrEMBL top hitse value%identityAlignment
A0A0A0K3B7 Uncharacterized protein1.7e-5986.26Show/hide
Query:  MNTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVY
        +NTTNGVRIKTWPASPVAG ATNMHF DI MVNVSNPILIDQEYCPWNQCNR+IPS IKI+KVSFKNIRGSSATP+AVKLICSS+LPC+EVKVANIDLVY
Subjt:  MNTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVY

Query:  NGKEGPITSQCMNVRPIISGIQNPQTCSSPY
        NG +G ITS+CMNV+PIISGIQNP  CSS Y
Subjt:  NGKEGPITSQCMNVRPIISGIQNPQTCSSPY

A0A1S3C2F4 exopolygalacturonase-like2.0e-6087.02Show/hide
Query:  MNTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVY
        MNTTNGVRIKTWPASPVAG ATNMHF DI MVNVSNPILIDQEYCPWNQCNRKIPSKIKI+KVSFKNIRGSSATP+AVKLICSS+LPC+EVKVANIDLVY
Subjt:  MNTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVY

Query:  NGKEGPITSQCMNVRPIISGIQNPQTCSSPY
        NG +G +TS+CMNV+PIISG QNP  CSS Y
Subjt:  NGKEGPITSQCMNVRPIISGIQNPQTCSSPY

A0A5A7UY44 Exopolygalacturonase-like2.0e-6087.02Show/hide
Query:  MNTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVY
        MNTTNGVRIKTWPASPVAG ATNMHF DI MVNVSNPILIDQEYCPWNQCNRKIPSKIKI+KVSFKNIRGSSATP+AVKLICSS+LPC+EVKVANIDLVY
Subjt:  MNTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVY

Query:  NGKEGPITSQCMNVRPIISGIQNPQTCSSPY
        NG +G +TS+CMNV+PIISG QNP  CSS Y
Subjt:  NGKEGPITSQCMNVRPIISGIQNPQTCSSPY

A0A5D3DD75 Exopolygalacturonase-like2.0e-6087.02Show/hide
Query:  MNTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVY
        MNTTNGVRIKTWPASPVAG ATNMHF DI MVNVSNPILIDQEYCPWNQCNRKIPSKIKI+KVSFKNIRGSSATP+AVKLICSS+LPC+EVKVANIDLVY
Subjt:  MNTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVY

Query:  NGKEGPITSQCMNVRPIISGIQNPQTCSSPY
        NG +G +TS+CMNV+PIISG QNP  CSS Y
Subjt:  NGKEGPITSQCMNVRPIISGIQNPQTCSSPY

A0A6J1F1K6 exopolygalacturonase-like5.8e-6085.07Show/hide
Query:  MNTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVY
        +NTTNGVRIKTWPAS  +GTATNM F DIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGS ATPMA+KLICS  LPCDEVKV +IDL Y
Subjt:  MNTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVY

Query:  NGKEGPITSQCMNVRPIISGIQNPQTCSSPYVFP
        NG +GPITSQC NVRPIISG QNP+ CSSPYV P
Subjt:  NGKEGPITSQCMNVRPIISGIQNPQTCSSPYVFP

SwissProt top hitse value%identityAlignment
P24548 Exopolygalacturonase (Fragment)1.8e-3758.87Show/hide
Query:  NGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYNGKE
        NGVRIKTWP S   G A+ MHF DI M +V  PILIDQ YCP+NQC  ++PS +K+SK+SFKNI+G+S T  AVKL+CS   PC+ V++A+IDL Y+GK 
Subjt:  NGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYNGKE

Query:  GPITSQCMNVRPIISGIQNPQTCS
        GP TS C N++P I G Q P  CS
Subjt:  GPITSQCMNVRPIISGIQNPQTCS

P35337 Polygalacturonase7.9e-3853.85Show/hide
Query:  TTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYNG
        T+NG+RIKTWP++    TA  +HF DII+  VSNPILIDQEYCPWNQCN+  PS IK+  ++F+NIRG+S    AVKL+CS   PC+ V++ +I++ Y G
Subjt:  TTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYNG

Query:  KEGPITSQCMNVRPIISGIQNPQTCSSPYV
         +GP T +C NV P + G QNP+ C  P V
Subjt:  KEGPITSQCMNVRPIISGIQNPQTCSSPYV

Q05967 Polygalacturonase4.6e-3855.47Show/hide
Query:  NTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYN
        NT NGVRIKTWPAS   G   ++HF DII+ NVSNP++IDQ YCP+N+CN+ +PS++KISKVSF+NI+G+S T  AV L+ S  +PC+ ++V +ID+ Y+
Subjt:  NTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYN

Query:  GKEGPITSQCMNVRPIISGIQNPQTCSS
        GKEGP  S C N++P + G QNP  C++
Subjt:  GKEGPITSQCMNVRPIISGIQNPQTCSS

Q39766 Polygalacturonase7.9e-3857.36Show/hide
Query:  NTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYN
        NT+NG RIKTWP     G  + +HF DI M NVS+PILIDQ+YCPWN+C +   SK+K+S +SFKNIRG+SA P A+K ICS   PC  V++A+ID+ +N
Subjt:  NTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYN

Query:  GKEGPITSQCMNVRPIISGIQNPQTCSSP
        G E P TSQC+NV+PI  G  NP  CS P
Subjt:  GKEGPITSQCMNVRPIISGIQNPQTCSSP

Q39786 Polygalacturonase1.6e-3858.14Show/hide
Query:  NTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYN
        NT+NG RIKTWP     G  + +HF DI M NVS+PILIDQ+YCPWN+C +   SK+K+S +SFKNIRG+SA P A+K ICS   PC  V++A+ID+ +N
Subjt:  NTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYN

Query:  GKEGPITSQCMNVRPIISGIQNPQTCSSP
        G E P TSQC+NV+PI SG  NP  CS P
Subjt:  GKEGPITSQCMNVRPIISGIQNPQTCSSP

Arabidopsis top hitse value%identityAlignment
AT3G07820.1 Pectin lyase-like superfamily protein1.0e-4057.03Show/hide
Query:  TTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYNG
        T NG+RIKTWP++  + TA+++HF DII+ +VSNPILIDQEYCPWNQCN++  S IK+  +SFKNIRG+S    AVKL+CS   PC  V++ +ID+ YNG
Subjt:  TTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYNG

Query:  KEGPITSQCMNVRPIISGIQNPQTCSSP
         +GP T  C NV P I G Q+P+ CS+P
Subjt:  KEGPITSQCMNVRPIISGIQNPQTCSSP

AT3G07830.1 Pectin lyase-like superfamily protein1.5e-3954.62Show/hide
Query:  TTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYNG
        T NG+RIKTWP++  + TA+N+HF +II+ NVSNPILIDQEYCPWNQCN++  S IK++ +SF+ IRG+S    AVKL+CS   PC+ V+V +I++ Y G
Subjt:  TTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYNG

Query:  KEGPITSQCMNVRPIISGIQNPQTCSSPYV
         +GP T  C NVRP + G Q P+ C++P V
Subjt:  KEGPITSQCMNVRPIISGIQNPQTCSSPYV

AT3G07840.1 Pectin lyase-like superfamily protein5.1e-4058.27Show/hide
Query:  TTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYNG
        T NG+RIKTWP++  A TA+ +HF +II+ NVSNPILIDQEYCPWNQCN++ PS IK+  +SFKNIRG+S    AVKL+CS   PC  V++ NI+L Y G
Subjt:  TTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYNG

Query:  KEGPITSQCMNVRPIISGIQNPQTCSS
         +GP T  C NV P + G QNP+ CS+
Subjt:  KEGPITSQCMNVRPIISGIQNPQTCSS

AT3G14040.1 Pectin lyase-like superfamily protein2.1e-3856.69Show/hide
Query:  NTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYN
        NT NGVRIKTWP SP  G A+N+ F DI M NVS P+LIDQEYCP+  C   +PSK+K+S V+ KNI+G+SAT +AVKL+CS  +PC  + +++I+LV+N
Subjt:  NTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYN

Query:  GKEGPITSQCMNVRPIISGIQNPQTCS
        GKEGP  S C N++PI+SG   P  C+
Subjt:  GKEGPITSQCMNVRPIISGIQNPQTCS

AT5G48140.1 Pectin lyase-like superfamily protein2.3e-4054.55Show/hide
Query:  TTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYNG
        T NG+RIKTWP++    TA+++HF +I++ NVSNPILIDQEYCPWNQCN++ PS IK++ +SFK IRG+S    AVKL+CS   PC  V+V ++++ Y G
Subjt:  TTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYNG

Query:  KEGPITSQCMNVRPIISGIQNPQTCSSPYVFP
         +GP T QC NV P + G Q P+ CSSP   P
Subjt:  KEGPITSQCMNVRPIISGIQNPQTCSSPYVFP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACACCACGAATGGTGTTAGGATCAAAACATGGCCAGCCTCTCCCGTTGCCGGCACTGCCACCAACATGCATTTTTTCGATATTATAATGGTCAATGTTAGCAACCC
AATTCTCATAGACCAAGAGTATTGCCCATGGAATCAGTGCAATCGCAAGATTCCGTCAAAGATTAAGATTAGTAAAGTGAGCTTCAAGAACATTAGAGGAAGTTCTGCAA
CTCCAATGGCAGTCAAGCTTATTTGTAGTAGCGACCTGCCATGTGACGAAGTAAAAGTAGCCAACATTGACCTTGTTTACAATGGAAAAGAAGGACCCATTACATCTCAG
TGTATGAATGTGAGACCCATCATTTCGGGGATACAAAATCCTCAAACATGCTCTTCCCCTTACGTTTTTCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGAACACCACGAATGGTGTTAGGATCAAAACATGGCCAGCCTCTCCCGTTGCCGGCACTGCCACCAACATGCATTTTTTCGATATTATAATGGTCAATGTTAGCAACCC
AATTCTCATAGACCAAGAGTATTGCCCATGGAATCAGTGCAATCGCAAGATTCCGTCAAAGATTAAGATTAGTAAAGTGAGCTTCAAGAACATTAGAGGAAGTTCTGCAA
CTCCAATGGCAGTCAAGCTTATTTGTAGTAGCGACCTGCCATGTGACGAAGTAAAAGTAGCCAACATTGACCTTGTTTACAATGGAAAAGAAGGACCCATTACATCTCAG
TGTATGAATGTGAGACCCATCATTTCGGGGATACAAAATCCTCAAACATGCTCTTCCCCTTACGTTTTTCCATGA
Protein sequenceShow/hide protein sequence
MNTTNGVRIKTWPASPVAGTATNMHFFDIIMVNVSNPILIDQEYCPWNQCNRKIPSKIKISKVSFKNIRGSSATPMAVKLICSSDLPCDEVKVANIDLVYNGKEGPITSQ
CMNVRPIISGIQNPQTCSSPYVFP