; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC02G028450 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC02G028450
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionPectin lyase-like superfamily protein
Genome locationCiama_Chr02:2749534..2752726
RNA-Seq ExpressionCaUC02G028450
SyntenyCaUC02G028450
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR000743 - Glycoside hydrolase, family 28
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059116.1 exopolygalacturonase-like [Cucumis melo var. makuwa]6.0e-4988.18Show/hide
Query:  MNTTNGVRIKTWPASPVAGTATNMHFSNIIMVNVSNPILIDQDYCPWNQCNRKIPSKIKISKVSFKNIRRSSATPMAVKLICSSNLPCDEVKVANIDLVY
        MNTTNGVRIKTWPASPVAG ATNMHF +I MVNVSNPILIDQ+YCPWNQCNRKIPSKIKI+KVSFKNIR SSATP+AVKLICSSNLPC+EVKVANIDLVY
Subjt:  MNTTNGVRIKTWPASPVAGTATNMHFSNIIMVNVSNPILIDQDYCPWNQCNRKIPSKIKISKVSFKNIRRSSATPMAVKLICSSNLPCDEVKVANIDLVY

Query:  NGIEGPITSQ
        NGI+G +TS+
Subjt:  NGIEGPITSQ

XP_008455553.1 PREDICTED: exopolygalacturonase-like [Cucumis melo]6.0e-4988.18Show/hide
Query:  MNTTNGVRIKTWPASPVAGTATNMHFSNIIMVNVSNPILIDQDYCPWNQCNRKIPSKIKISKVSFKNIRRSSATPMAVKLICSSNLPCDEVKVANIDLVY
        MNTTNGVRIKTWPASPVAG ATNMHF +I MVNVSNPILIDQ+YCPWNQCNRKIPSKIKI+KVSFKNIR SSATP+AVKLICSSNLPC+EVKVANIDLVY
Subjt:  MNTTNGVRIKTWPASPVAGTATNMHFSNIIMVNVSNPILIDQDYCPWNQCNRKIPSKIKISKVSFKNIRRSSATPMAVKLICSSNLPCDEVKVANIDLVY

Query:  NGIEGPITSQ
        NGI+G +TS+
Subjt:  NGIEGPITSQ

XP_011659699.2 exopolygalacturonase [Cucumis sativus]2.3e-4887.27Show/hide
Query:  MNTTNGVRIKTWPASPVAGTATNMHFSNIIMVNVSNPILIDQDYCPWNQCNRKIPSKIKISKVSFKNIRRSSATPMAVKLICSSNLPCDEVKVANIDLVY
        +NTTNGVRIKTWPASPVAG ATNMHFS+I MVNVSNPILIDQ+YCPWNQCNR+IPS IKI+KVSFKNIR SSATP+AVKLICSSNLPC+EVKVANIDLVY
Subjt:  MNTTNGVRIKTWPASPVAGTATNMHFSNIIMVNVSNPILIDQDYCPWNQCNRKIPSKIKISKVSFKNIRRSSATPMAVKLICSSNLPCDEVKVANIDLVY

Query:  NGIEGPITSQ
        NGI+G ITS+
Subjt:  NGIEGPITSQ

XP_038887127.1 exopolygalacturonase-like [Benincasa hispida]9.3e-5090Show/hide
Query:  MNTTNGVRIKTWPASPVAGTATNMHFSNIIMVNVSNPILIDQDYCPWNQCNRKIPSKIKISKVSFKNIRRSSATPMAVKLICSSNLPCDEVKVANIDLVY
        MNTTNGVRIKTWPASPVAGTATNMHFS+IIMVNVS PILIDQ+YCPWNQCNRKIPSKIKISKVSFKNI  +SATPMAVKL+CSS+LPCDEVK+ NIDLVY
Subjt:  MNTTNGVRIKTWPASPVAGTATNMHFSNIIMVNVSNPILIDQDYCPWNQCNRKIPSKIKISKVSFKNIRRSSATPMAVKLICSSNLPCDEVKVANIDLVY

Query:  NGIEGPITSQ
        NG EGPITSQ
Subjt:  NGIEGPITSQ

XP_038887188.1 exopolygalacturonase-like [Benincasa hispida]2.4e-5092.66Show/hide
Query:  MNTTNGVRIKTWPASPVAGTATNMHFSNIIMVNVSNPILIDQDYCPWNQCNRKIPSKIKISKVSFKNIRRSSATPMAVKLICSSNLPCDEVKVANIDLVY
        MNTTNGVRIKTWPASPV+GTATNMHFS+IIMVNVSNPILIDQ+YCPWNQCNRKIPSKIKISKVSFKNIR SSATPMAVKLICS  LPCDEVKVANIDLVY
Subjt:  MNTTNGVRIKTWPASPVAGTATNMHFSNIIMVNVSNPILIDQDYCPWNQCNRKIPSKIKISKVSFKNIRRSSATPMAVKLICSSNLPCDEVKVANIDLVY

Query:  NGIEGPITS
        NG EGPI S
Subjt:  NGIEGPITS

TrEMBL top hitse value%identityAlignment
A0A0A0K3B7 Uncharacterized protein1.1e-4887.27Show/hide
Query:  MNTTNGVRIKTWPASPVAGTATNMHFSNIIMVNVSNPILIDQDYCPWNQCNRKIPSKIKISKVSFKNIRRSSATPMAVKLICSSNLPCDEVKVANIDLVY
        +NTTNGVRIKTWPASPVAG ATNMHFS+I MVNVSNPILIDQ+YCPWNQCNR+IPS IKI+KVSFKNIR SSATP+AVKLICSSNLPC+EVKVANIDLVY
Subjt:  MNTTNGVRIKTWPASPVAGTATNMHFSNIIMVNVSNPILIDQDYCPWNQCNRKIPSKIKISKVSFKNIRRSSATPMAVKLICSSNLPCDEVKVANIDLVY

Query:  NGIEGPITSQ
        NGI+G ITS+
Subjt:  NGIEGPITSQ

A0A1S3C2F4 exopolygalacturonase-like2.9e-4988.18Show/hide
Query:  MNTTNGVRIKTWPASPVAGTATNMHFSNIIMVNVSNPILIDQDYCPWNQCNRKIPSKIKISKVSFKNIRRSSATPMAVKLICSSNLPCDEVKVANIDLVY
        MNTTNGVRIKTWPASPVAG ATNMHF +I MVNVSNPILIDQ+YCPWNQCNRKIPSKIKI+KVSFKNIR SSATP+AVKLICSSNLPC+EVKVANIDLVY
Subjt:  MNTTNGVRIKTWPASPVAGTATNMHFSNIIMVNVSNPILIDQDYCPWNQCNRKIPSKIKISKVSFKNIRRSSATPMAVKLICSSNLPCDEVKVANIDLVY

Query:  NGIEGPITSQ
        NGI+G +TS+
Subjt:  NGIEGPITSQ

A0A5A7UY44 Exopolygalacturonase-like2.9e-4988.18Show/hide
Query:  MNTTNGVRIKTWPASPVAGTATNMHFSNIIMVNVSNPILIDQDYCPWNQCNRKIPSKIKISKVSFKNIRRSSATPMAVKLICSSNLPCDEVKVANIDLVY
        MNTTNGVRIKTWPASPVAG ATNMHF +I MVNVSNPILIDQ+YCPWNQCNRKIPSKIKI+KVSFKNIR SSATP+AVKLICSSNLPC+EVKVANIDLVY
Subjt:  MNTTNGVRIKTWPASPVAGTATNMHFSNIIMVNVSNPILIDQDYCPWNQCNRKIPSKIKISKVSFKNIRRSSATPMAVKLICSSNLPCDEVKVANIDLVY

Query:  NGIEGPITSQ
        NGI+G +TS+
Subjt:  NGIEGPITSQ

A0A5D3DD75 Exopolygalacturonase-like2.9e-4988.18Show/hide
Query:  MNTTNGVRIKTWPASPVAGTATNMHFSNIIMVNVSNPILIDQDYCPWNQCNRKIPSKIKISKVSFKNIRRSSATPMAVKLICSSNLPCDEVKVANIDLVY
        MNTTNGVRIKTWPASPVAG ATNMHF +I MVNVSNPILIDQ+YCPWNQCNRKIPSKIKI+KVSFKNIR SSATP+AVKLICSSNLPC+EVKVANIDLVY
Subjt:  MNTTNGVRIKTWPASPVAGTATNMHFSNIIMVNVSNPILIDQDYCPWNQCNRKIPSKIKISKVSFKNIRRSSATPMAVKLICSSNLPCDEVKVANIDLVY

Query:  NGIEGPITSQ
        NGI+G +TS+
Subjt:  NGIEGPITSQ

A0A6J1F1K6 exopolygalacturonase-like7.9e-4784.55Show/hide
Query:  MNTTNGVRIKTWPASPVAGTATNMHFSNIIMVNVSNPILIDQDYCPWNQCNRKIPSKIKISKVSFKNIRRSSATPMAVKLICSSNLPCDEVKVANIDLVY
        +NTTNGVRIKTWPAS  +GTATNM F +IIMVNVSNPILIDQ+YCPWNQCNRKIPSKIKISKVSFKNIR S ATPMA+KLICS +LPCDEVKV +IDL Y
Subjt:  MNTTNGVRIKTWPASPVAGTATNMHFSNIIMVNVSNPILIDQDYCPWNQCNRKIPSKIKISKVSFKNIRRSSATPMAVKLICSSNLPCDEVKVANIDLVY

Query:  NGIEGPITSQ
        NGI+GPITSQ
Subjt:  NGIEGPITSQ

SwissProt top hitse value%identityAlignment
P24548 Exopolygalacturonase (Fragment)8.5e-3058.1Show/hide
Query:  NGVRIKTWPASPVAGTATNMHFSNIIMVNVSNPILIDQDYCPWNQCNRKIPSKIKISKVSFKNIRRSSATPMAVKLICSSNLPCDEVKVANIDLVYNGIE
        NGVRIKTWP S   G A+ MHF +I M +V  PILIDQ YCP+NQC  ++PS +K+SK+SFKNI+ +S T  AVKL+CS + PC+ V++A+IDL Y+G  
Subjt:  NGVRIKTWPASPVAGTATNMHFSNIIMVNVSNPILIDQDYCPWNQCNRKIPSKIKISKVSFKNIRRSSATPMAVKLICSSNLPCDEVKVANIDLVYNGIE

Query:  GPITS
        GP TS
Subjt:  GPITS

Q05967 Polygalacturonase3.2e-2955.56Show/hide
Query:  NTTNGVRIKTWPASPVAGTATNMHFSNIIMVNVSNPILIDQDYCPWNQCNRKIPSKIKISKVSFKNIRRSSATPMAVKLICSSNLPCDEVKVANIDLVYN
        NT NGVRIKTWPAS   G   ++HF +II+ NVSNP++IDQ YCP+N+CN+ +PS++KISKVSF+NI+ +S T  AV L+ S  +PC+ ++V +ID+ Y+
Subjt:  NTTNGVRIKTWPASPVAGTATNMHFSNIIMVNVSNPILIDQDYCPWNQCNRKIPSKIKISKVSFKNIRRSSATPMAVKLICSSNLPCDEVKVANIDLVYN

Query:  GIEGPITS
        G EGP  S
Subjt:  GIEGPITS

Q39766 Polygalacturonase2.5e-2955.96Show/hide
Query:  NTTNGVRIKTWPASPVAGTATNMHFSNIIMVNVSNPILIDQDYCPWNQCNRKIPSKIKISKVSFKNIRRSSATPMAVKLICSSNLPCDEVKVANIDLVYN
        NT+NG RIKTWP     G  + +HF +I M NVS+PILIDQ YCPWN+C +   SK+K+S +SFKNIR +SA P A+K ICS + PC  V++A+ID+ +N
Subjt:  NTTNGVRIKTWPASPVAGTATNMHFSNIIMVNVSNPILIDQDYCPWNQCNRKIPSKIKISKVSFKNIRRSSATPMAVKLICSSNLPCDEVKVANIDLVYN

Query:  GIEGPITSQ
        G E P TSQ
Subjt:  GIEGPITSQ

Q39786 Polygalacturonase2.5e-2955.96Show/hide
Query:  NTTNGVRIKTWPASPVAGTATNMHFSNIIMVNVSNPILIDQDYCPWNQCNRKIPSKIKISKVSFKNIRRSSATPMAVKLICSSNLPCDEVKVANIDLVYN
        NT+NG RIKTWP     G  + +HF +I M NVS+PILIDQ YCPWN+C +   SK+K+S +SFKNIR +SA P A+K ICS + PC  V++A+ID+ +N
Subjt:  NTTNGVRIKTWPASPVAGTATNMHFSNIIMVNVSNPILIDQDYCPWNQCNRKIPSKIKISKVSFKNIRRSSATPMAVKLICSSNLPCDEVKVANIDLVYN

Query:  GIEGPITSQ
        G E P TSQ
Subjt:  GIEGPITSQ

Q40312 Polygalacturonase6.5e-3058Show/hide
Query:  TTNGVRIKTWPASPVAGTATNMHFSNIIMVNVSNPILIDQDYCPWNQCNRKIPSKIKISKVSFKNIRRSSATPMAVKLICSSNLPCDEVKVANIDLVYNG
        T NGVRIKTWP +P   T +++HF +I M NV NP++IDQ+Y PWNQC++K PSKIK+SK+SFKN++ +S T   V LICSS +PCD V++ N+DL +NG
Subjt:  TTNGVRIKTWPASPVAGTATNMHFSNIIMVNVSNPILIDQDYCPWNQCNRKIPSKIKISKVSFKNIRRSSATPMAVKLICSSNLPCDEVKVANIDLVYNG

Arabidopsis top hitse value%identityAlignment
AT3G07820.1 Pectin lyase-like superfamily protein4.2e-3255.66Show/hide
Query:  TTNGVRIKTWPASPVAGTATNMHFSNIIMVNVSNPILIDQDYCPWNQCNRKIPSKIKISKVSFKNIRRSSATPMAVKLICSSNLPCDEVKVANIDLVYNG
        T NG+RIKTWP++  + TA+++HF +II+ +VSNPILIDQ+YCPWNQCN++  S IK+  +SFKNIR +S    AVKL+CS   PC  V++ +ID+ YNG
Subjt:  TTNGVRIKTWPASPVAGTATNMHFSNIIMVNVSNPILIDQDYCPWNQCNRKIPSKIKISKVSFKNIRRSSATPMAVKLICSSNLPCDEVKVANIDLVYNG

Query:  IEGPIT
         +GP T
Subjt:  IEGPIT

AT3G07830.1 Pectin lyase-like superfamily protein3.2e-3255.66Show/hide
Query:  TTNGVRIKTWPASPVAGTATNMHFSNIIMVNVSNPILIDQDYCPWNQCNRKIPSKIKISKVSFKNIRRSSATPMAVKLICSSNLPCDEVKVANIDLVYNG
        T NG+RIKTWP++  + TA+N+HF NII+ NVSNPILIDQ+YCPWNQCN++  S IK++ +SF+ IR +S    AVKL+CS   PC+ V+V +I++ Y G
Subjt:  TTNGVRIKTWPASPVAGTATNMHFSNIIMVNVSNPILIDQDYCPWNQCNRKIPSKIKISKVSFKNIRRSSATPMAVKLICSSNLPCDEVKVANIDLVYNG

Query:  IEGPIT
         +GP T
Subjt:  IEGPIT

AT3G07840.1 Pectin lyase-like superfamily protein8.4e-3359.43Show/hide
Query:  TTNGVRIKTWPASPVAGTATNMHFSNIIMVNVSNPILIDQDYCPWNQCNRKIPSKIKISKVSFKNIRRSSATPMAVKLICSSNLPCDEVKVANIDLVYNG
        T NG+RIKTWP++  A TA+ +HF NII+ NVSNPILIDQ+YCPWNQCN++ PS IK+  +SFKNIR +S    AVKL+CS   PC  V++ NI+L Y G
Subjt:  TTNGVRIKTWPASPVAGTATNMHFSNIIMVNVSNPILIDQDYCPWNQCNRKIPSKIKISKVSFKNIRRSSATPMAVKLICSSNLPCDEVKVANIDLVYNG

Query:  IEGPIT
         +GP T
Subjt:  IEGPIT

AT3G14040.1 Pectin lyase-like superfamily protein3.9e-3055.56Show/hide
Query:  NTTNGVRIKTWPASPVAGTATNMHFSNIIMVNVSNPILIDQDYCPWNQCNRKIPSKIKISKVSFKNIRRSSATPMAVKLICSSNLPCDEVKVANIDLVYN
        NT NGVRIKTWP SP  G A+N+ F +I M NVS P+LIDQ+YCP+  C   +PSK+K+S V+ KNI+ +SAT +AVKL+CS  +PC  + +++I+LV+N
Subjt:  NTTNGVRIKTWPASPVAGTATNMHFSNIIMVNVSNPILIDQDYCPWNQCNRKIPSKIKISKVSFKNIRRSSATPMAVKLICSSNLPCDEVKVANIDLVYN

Query:  GIEGPITS
        G EGP  S
Subjt:  GIEGPITS

AT5G48140.1 Pectin lyase-like superfamily protein1.1e-3254.63Show/hide
Query:  TTNGVRIKTWPASPVAGTATNMHFSNIIMVNVSNPILIDQDYCPWNQCNRKIPSKIKISKVSFKNIRRSSATPMAVKLICSSNLPCDEVKVANIDLVYNG
        T NG+RIKTWP++    TA+++HF NI++ NVSNPILIDQ+YCPWNQCN++ PS IK++ +SFK IR +S    AVKL+CS   PC  V+V ++++ Y G
Subjt:  TTNGVRIKTWPASPVAGTATNMHFSNIIMVNVSNPILIDQDYCPWNQCNRKIPSKIKISKVSFKNIRRSSATPMAVKLICSSNLPCDEVKVANIDLVYNG

Query:  IEGPITSQ
         +GP T Q
Subjt:  IEGPITSQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACACCACTAATGGTGTTAGGATCAAAACATGGCCAGCCTCTCCCGTTGCTGGCACTGCCACCAACATGCATTTTTCAAATATTATAATGGTCAATGTTAGCAACCC
AATTCTGATAGACCAAGATTATTGCCCATGGAATCAGTGTAATCGCAAGATTCCGTCAAAGATTAAGATTAGCAAAGTGAGCTTCAAGAACATTAGAAGAAGTTCTGCAA
CTCCAATGGCAGTGAAACTTATTTGTAGTAGCAACCTGCCTTGTGACGAAGTAAAAGTAGCCAACATTGATCTCGTTTACAATGGAATAGAGGGTCCTATTACATCTCAA
TGA
mRNA sequenceShow/hide mRNA sequence
ATGAACACCACTAATGGTGTTAGGATCAAAACATGGCCAGCCTCTCCCGTTGCTGGCACTGCCACCAACATGCATTTTTCAAATATTATAATGGTCAATGTTAGCAACCC
AATTCTGATAGACCAAGATTATTGCCCATGGAATCAGTGTAATCGCAAGATTCCGTCAAAGATTAAGATTAGCAAAGTGAGCTTCAAGAACATTAGAAGAAGTTCTGCAA
CTCCAATGGCAGTGAAACTTATTTGTAGTAGCAACCTGCCTTGTGACGAAGTAAAAGTAGCCAACATTGATCTCGTTTACAATGGAATAGAGGGTCCTATTACATCTCAA
TGAAAGATATTAAAAGTGAGACAGGGTGGGTTAAACCATATGTCACACACCAAGTTCACAACCTTCGTAACCTCTTTTAGTTTCATTGCAAACTTGTCTTCTATTCTTCA
ATTGATATATATATGTATATAG
Protein sequenceShow/hide protein sequence
MNTTNGVRIKTWPASPVAGTATNMHFSNIIMVNVSNPILIDQDYCPWNQCNRKIPSKIKISKVSFKNIRRSSATPMAVKLICSSNLPCDEVKVANIDLVYNGIEGPITSQ