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CaUC02G031000 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC02G031000
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionNuclear polyadenylated RNA-binding protein 3-like
Genome locationCiama_Chr02:5099992..5100528
RNA-Seq ExpressionCaUC02G031000
SyntenyCaUC02G031000
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033784.1 nuclear polyadenylated RNA-binding protein 3-like [Cucumis melo var. makuwa]1.4e-7986.17Show/hide
Query:  MEAISGSSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPILAVPISLVEDRIDGSL-------
        MEA+SG SSSSSS+EFVFYDDFEYEFVEDIERLSNWELLDAFDADSEM GNGGEEQGEN SVD  V +DLREMISP+LAVPISLVEDRIDGSL       
Subjt:  MEAISGSSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPILAVPISLVEDRIDGSL-------

Query:  ---EDGFAYGYNDAQEEDETDDHDDLDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
           EDGFAYGY+DA+EEDE DD D+ DEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  ---EDGFAYGYNDAQEEDETDDHDDLDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

XP_008448068.1 PREDICTED: uncharacterized protein LOC103490356 [Cucumis melo]5.3e-7983.08Show/hide
Query:  MEAISG-------SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPILAVPISLVEDRIDGSL
        MEA+SG       SSSSSSS+EFVFYDDFEYEFVEDIERLSNWELLDAFDADSEM GNGGEEQGEN SVD  V +DLREMISP+LAVPISLVEDRIDGSL
Subjt:  MEAISG-------SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPILAVPISLVEDRIDGSL

Query:  ----------EDGFAYGYNDAQEEDETDDHDDLDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
                  EDGFAYGY+DA+EEDE DD ++ DEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  ----------EDGFAYGYNDAQEEDETDDHDDLDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

XP_011658549.2 uncharacterized protein LOC101212092 [Cucumis sativus]6.3e-8086.77Show/hide
Query:  MEAISG-SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPILAVPISLVEDRIDGSL------
        MEAISG SSSSSSS+EFVFYDDFEYEFVEDIERLSNWELLDAFDADSEM GNGGEEQG NCSVD  V +DLREMISP+LAVPISLVEDRID SL      
Subjt:  MEAISG-SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPILAVPISLVEDRIDGSL------

Query:  ----EDGFAYGYNDAQEEDETDDHDDLDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
            EDGFAYGYNDA+EEDE D  DD DEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  ----EDGFAYGYNDAQEEDETDDHDDLDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

XP_023553634.1 histone H2A.Z-specific chaperone CHZ1-like [Cucurbita pepo subsp. pepo]1.8e-7175.51Show/hide
Query:  MEAISG-SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPILAVPISLVEDRIDGSL------
        MEA+SG SSSSSSS+EF FYDDFEYEFVED+ERLSNWE L+A DADSEMDGNGGE++G+NC V AR+ EDLRE+ISP++ VPISL EDRI   L      
Subjt:  MEAISG-SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPILAVPISLVEDRIDGSL------

Query:  ----EDGFAYGYNDAQE-------EDETDDHDDLDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
            EDGFAYGYNDA+E       +D+ DD DD DE DLDDELVPWSVSDKLGRQRMRKLGKRGFT+MYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  ----EDGFAYGYNDAQE-------EDETDDHDDLDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

XP_038886897.1 uncharacterized protein LOC120077100 [Benincasa hispida]2.5e-7383.16Show/hide
Query:  MEAISGSSSSSS-SLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPILAVPISLVEDRIDGSL------
        MEAISGSSSSSS S  FVF DDFEYEFVEDIERLSNWELLDAFDADSEMDGNG EEQGENCSVD RV+EDLREMI     VPISLVEDRIDGSL      
Subjt:  MEAISGSSSSSS-SLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPILAVPISLVEDRIDGSL------

Query:  ----EDGFAYGYNDAQEEDETDDHD-DLDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
            ED FAYGYND+ EE+E ++ D D DEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  ----EDGFAYGYNDAQEEDETDDHD-DLDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

TrEMBL top hitse value%identityAlignment
A0A0A0K4F3 Uncharacterized protein3.0e-8086.77Show/hide
Query:  MEAISG-SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPILAVPISLVEDRIDGSL------
        MEAISG SSSSSSS+EFVFYDDFEYEFVEDIERLSNWELLDAFDADSEM GNGGEEQG NCSVD  V +DLREMISP+LAVPISLVEDRID SL      
Subjt:  MEAISG-SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPILAVPISLVEDRIDGSL------

Query:  ----EDGFAYGYNDAQEEDETDDHDDLDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
            EDGFAYGYNDA+EEDE D  DD DEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  ----EDGFAYGYNDAQEEDETDDHDDLDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

A0A1S3BJG2 uncharacterized protein LOC1034903562.6e-7983.08Show/hide
Query:  MEAISG-------SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPILAVPISLVEDRIDGSL
        MEA+SG       SSSSSSS+EFVFYDDFEYEFVEDIERLSNWELLDAFDADSEM GNGGEEQGEN SVD  V +DLREMISP+LAVPISLVEDRIDGSL
Subjt:  MEAISG-------SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPILAVPISLVEDRIDGSL

Query:  ----------EDGFAYGYNDAQEEDETDDHDDLDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
                  EDGFAYGY+DA+EEDE DD ++ DEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  ----------EDGFAYGYNDAQEEDETDDHDDLDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

A0A5A7SRG7 Nuclear polyadenylated RNA-binding protein 3-like6.8e-8086.17Show/hide
Query:  MEAISGSSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPILAVPISLVEDRIDGSL-------
        MEA+SG SSSSSS+EFVFYDDFEYEFVEDIERLSNWELLDAFDADSEM GNGGEEQGEN SVD  V +DLREMISP+LAVPISLVEDRIDGSL       
Subjt:  MEAISGSSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPILAVPISLVEDRIDGSL-------

Query:  ---EDGFAYGYNDAQEEDETDDHDDLDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
           EDGFAYGY+DA+EEDE DD D+ DEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  ---EDGFAYGYNDAQEEDETDDHDDLDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

A0A6J1C3A5 uncharacterized protein LOC1110075514.1e-6169.59Show/hide
Query:  MEAISG--SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPILAVPISLVEDRIDG-------
        ME++SG  SSSSSSS+EFVF+DDF++EFV+++ERLSNWE LDA  +D+EMDG+ G+ +G + SVD RV  DLRE +SP+ AVPISL EDRID        
Subjt:  MEAISG--SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPILAVPISLVEDRIDG-------

Query:  -SLEDGFAYGYN------DAQEEDETDDHDDLDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
          LEDGFAYGY+      +  EEDE D  DD DE+DLDDELVPWSVS KLGRQRMRKLGKRGFT+MYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  -SLEDGFAYGYN------DAQEEDETDDHDDLDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

A0A6J1I004 uncharacterized protein LOC1114684622.6e-7175.51Show/hide
Query:  MEAISG----SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPILAVPISLVEDRIDGSL---
        MEA+SG    SSSSSSS+EF FYDDFEYEFVED+ERLSNWE L+A DADSEMDGNGGE++G+NC V AR+ EDL EMISP++ VPISL EDRI   L   
Subjt:  MEAISG----SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPILAVPISLVEDRIDGSL---

Query:  -------EDGFAYGYNDAQEE----DETDDHDDLDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
               EDGFAYGYNDA+E+    D+ DD DD DE DLDDELVPWSVSDKLGRQRMRKLGKRGFT+MYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  -------EDGFAYGYNDAQEE----DETDDHDDLDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G34630.1 unknown protein9.5e-1859.76Show/hide
Query:  GFAYG--YNDAQEEDETDDHDDLDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLK
        G++ G  Y D+  +D  +D +  D +DLD+ELVP SVS K+GRQRMRKLGKR   K+Y SK SPFL  KPG VRGKHGLG+K
Subjt:  GFAYG--YNDAQEEDETDDHDDLDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLK

AT5G48420.1 unknown protein2.0e-0742.71Show/hide
Query:  ISLVEDRIDGSLEDGFAYGYNDAQEEDETDDHDDLDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFT--KPGCVRGKHGLGLK
        +SL ED    S++DG      D  EED+ D +DDLD+   D ELV          QR+RK GKR F K    K+  + ++  KPGCV GKHGL +K
Subjt:  ISLVEDRIDGSLEDGFAYGYNDAQEEDETDDHDDLDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFT--KPGCVRGKHGLGLK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGCCATTTCTGGATCATCATCTTCTTCTTCTTCTTTGGAATTCGTGTTTTATGATGATTTTGAATACGAATTTGTTGAAGATATCGAACGTCTTTCGAACTGGGA
GTTGCTCGATGCTTTTGATGCCGATTCAGAAATGGACGGAAATGGAGGCGAAGAACAAGGGGAAAACTGCAGCGTTGACGCTAGAGTTCATGAAGATCTTCGAGAGATGA
TTTCTCCTATTCTCGCGGTGCCGATTTCGCTTGTGGAGGATCGAATCGACGGTTCTTTGGAAGACGGTTTTGCGTACGGTTATAACGATGCGCAGGAGGAGGATGAAACC
GATGATCATGATGATCTTGATGAGTTCGATTTGGATGACGAACTCGTTCCGTGGTCTGTCAGTGATAAACTCGGACGGCAGAGGATGAGGAAATTGGGGAAAAGAGGTTT
TACGAAGATGTATAATTCGAAGAGATCTCCGTTTTTGTTCACAAAGCCTGGATGTGTCCGCGGCAAGCACGGACTCGGCTTGAAACACAGTTATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGCCATTTCTGGATCATCATCTTCTTCTTCTTCTTTGGAATTCGTGTTTTATGATGATTTTGAATACGAATTTGTTGAAGATATCGAACGTCTTTCGAACTGGGA
GTTGCTCGATGCTTTTGATGCCGATTCAGAAATGGACGGAAATGGAGGCGAAGAACAAGGGGAAAACTGCAGCGTTGACGCTAGAGTTCATGAAGATCTTCGAGAGATGA
TTTCTCCTATTCTCGCGGTGCCGATTTCGCTTGTGGAGGATCGAATCGACGGTTCTTTGGAAGACGGTTTTGCGTACGGTTATAACGATGCGCAGGAGGAGGATGAAACC
GATGATCATGATGATCTTGATGAGTTCGATTTGGATGACGAACTCGTTCCGTGGTCTGTCAGTGATAAACTCGGACGGCAGAGGATGAGGAAATTGGGGAAAAGAGGTTT
TACGAAGATGTATAATTCGAAGAGATCTCCGTTTTTGTTCACAAAGCCTGGATGTGTCCGCGGCAAGCACGGACTCGGCTTGAAACACAGTTATTAG
Protein sequenceShow/hide protein sequence
MEAISGSSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPILAVPISLVEDRIDGSLEDGFAYGYNDAQEEDET
DDHDDLDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY