CuGenDBv2

Gene ID	CaUC02G031790
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Photosystem I P700 chlorophyll a apoprotein A1
Genome location	Ciama_Chr02:6289251..6291798
RNA-Seq Expression	CaUC02G031790
Synteny	CaUC02G031790
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0022900 - electron transport chain (biological process) GO:0009522 - photosystem I (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0000287 - magnesium ion binding (molecular function) GO:0009055 - electron transfer activity (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domains	IPR001280 - Photosystem I PsaA/PsaB IPR036408 - Photosystem I PsaA/PsaB superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

ATL60428.1 photosystem I P700 chlorophyll a apoprotein A1 [Cephalanthus occidentalis]

4.4e-14

82.98

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Query:  TWKMQSYVWSSVSDQRVVTHITGGNFVQIFITINGWLRNFLWAQASQ
        +WKMQS VW S+SDQRVVTHITGGNF Q  ITINGWLR+FLWAQASQ
Subjt:  TWKMQSYVWSSVSDQRVVTHITGGNFVQIFITINGWLRNFLWAQASQ

PHT34357.1 Photosystem I chlorophyll a apoprotein A1 [Capsicum baccatum]

2.6e-14

81.63

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Query:  TWKMQSYVWSSVSDQRVVTHITGGNFVQIFITINGWLRNFLWAQASQGL
        +WKMQS VW SVSDQ VVTHITGGNF Q  ITINGWLR+FLWAQASQG+
Subjt:  TWKMQSYVWSSVSDQRVVTHITGGNFVQIFITINGWLRNFLWAQASQGL

QYB20786.1 photosystem I P700 apoprotein A1 [Callitris pyramidalis]

4.4e-14

82.98

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Query:  TWKMQSYVWSSVSDQRVVTHITGGNFVQIFITINGWLRNFLWAQASQ
        +WKMQS VW SVSDQRVVTHITGGNF Q  +TINGWLR+FLWAQASQ
Subjt:  TWKMQSYVWSSVSDQRVVTHITGGNFVQIFITINGWLRNFLWAQASQ

YP_009346610.1 photosystem I P700 apoprotein A1 [Huperzia serrata]

1.5e-14

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Query:  TWKMQSYVWSSVSDQRVVTHITGGNFVQIFITINGWLRNFLWAQASQGLNCH
        +WKMQS VW SVSDQ++VTHITGGNF Q  ITINGWLR+FLWAQASQ +  H
Subjt:  TWKMQSYVWSSVSDQRVVTHITGGNFVQIFITINGWLRNFLWAQASQGLNCH

YP_009379772.1 photosystem I P700 apoprotein A1 [Callitris rhomboidea]

4.4e-14

82.98

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Query:  TWKMQSYVWSSVSDQRVVTHITGGNFVQIFITINGWLRNFLWAQASQ
        +WKMQS VW SVSDQRVVTHITGGNF Q  +TINGWLR+FLWAQASQ
Subjt:  TWKMQSYVWSSVSDQRVVTHITGGNFVQIFITINGWLRNFLWAQASQ

TrEMBL top hits

e value

%identity

Alignment

A0A1Y1BD71 Photosystem I P700 chlorophyll a apoprotein A1

2.1e-14

82.98

Show/hide

Query:  TWKMQSYVWSSVSDQRVVTHITGGNFVQIFITINGWLRNFLWAQASQ
        +WKMQS VW SVSDQRVVTHITGGNF Q  +TINGWLR+FLWAQASQ
Subjt:  TWKMQSYVWSSVSDQRVVTHITGGNFVQIFITINGWLRNFLWAQASQ

A0A2G2VN13 Photosystem I chlorophyll a apoprotein A1

1.3e-14

81.63

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Query:  TWKMQSYVWSSVSDQRVVTHITGGNFVQIFITINGWLRNFLWAQASQGL
        +WKMQS VW SVSDQ VVTHITGGNF Q  ITINGWLR+FLWAQASQG+
Subjt:  TWKMQSYVWSSVSDQRVVTHITGGNFVQIFITINGWLRNFLWAQASQGL

A0A343R012 Photosystem I P700 chlorophyll a apoprotein A1

7.3e-15

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Query:  TWKMQSYVWSSVSDQRVVTHITGGNFVQIFITINGWLRNFLWAQASQGLNCH
        +WKMQS VW SVSDQ++VTHITGGNF Q  ITINGWLR+FLWAQASQ +  H
Subjt:  TWKMQSYVWSSVSDQRVVTHITGGNFVQIFITINGWLRNFLWAQASQGLNCH

A0A3G1GIY5 Photosystem I P700 chlorophyll a apoprotein A1

7.3e-15

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Query:  TWKMQSYVWSSVSDQRVVTHITGGNFVQIFITINGWLRNFLWAQASQGLNCH
        +WKMQS VW SVSDQ++VTHITGGNF Q  ITINGWLR+FLWAQASQ +  H
Subjt:  TWKMQSYVWSSVSDQRVVTHITGGNFVQIFITINGWLRNFLWAQASQGLNCH

A0A3Q9R334 Photosystem I P700 chlorophyll a apoprotein A1

7.3e-15

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Query:  TWKMQSYVWSSVSDQRVVTHITGGNFVQIFITINGWLRNFLWAQASQGLNCH
        +WKMQS VW SVSDQ++VTHITGGNF Q  ITINGWLR+FLWAQASQ +  H
Subjt:  TWKMQSYVWSSVSDQRVVTHITGGNFVQIFITINGWLRNFLWAQASQGLNCH

SwissProt top hits

e value

%identity

Alignment

Q2QD89 Photosystem I P700 chlorophyll a apoprotein A1

2.9e-16

82.98

Show/hide

Query:  TWKMQSYVWSSVSDQRVVTHITGGNFVQIFITINGWLRNFLWAQASQ
        +WKMQS VW SVSDQ VVTHITGGNF Q  ITINGWLR+FLWAQASQ
Subjt:  TWKMQSYVWSSVSDQRVVTHITGGNFVQIFITINGWLRNFLWAQASQ

Q3C1H8 Photosystem I P700 chlorophyll a apoprotein A1

2.9e-16

82.98

Show/hide

Query:  TWKMQSYVWSSVSDQRVVTHITGGNFVQIFITINGWLRNFLWAQASQ
        +WKMQS VW SVSDQ VVTHITGGNF Q  ITINGWLR+FLWAQASQ
Subjt:  TWKMQSYVWSSVSDQRVVTHITGGNFVQIFITINGWLRNFLWAQASQ

Q5SD06 Photosystem I P700 chlorophyll a apoprotein A1

2.0e-17

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Query:  TWKMQSYVWSSVSDQRVVTHITGGNFVQIFITINGWLRNFLWAQASQGLNCH
        +WKMQS VW SVSDQ++VTHITGGNF Q  ITINGWLR+FLWAQASQ +  H
Subjt:  TWKMQSYVWSSVSDQRVVTHITGGNFVQIFITINGWLRNFLWAQASQGLNCH

Q8S8X4 Photosystem I P700 chlorophyll a apoprotein A1

2.9e-16

82.98

Show/hide

Query:  TWKMQSYVWSSVSDQRVVTHITGGNFVQIFITINGWLRNFLWAQASQ
        +WKMQS VW SVSDQ VVTHITGGNF Q  ITINGWLR+FLWAQASQ
Subjt:  TWKMQSYVWSSVSDQRVVTHITGGNFVQIFITINGWLRNFLWAQASQ

Q9MUJ1 Photosystem I P700 chlorophyll a apoprotein A1 (Fragment)

1.3e-16

80.85

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Query:  TWKMQSYVWSSVSDQRVVTHITGGNFVQIFITINGWLRNFLWAQASQ
        +WKMQS VW SVSDQ++VTHITGGNF Q  ITINGWLR+FLWAQASQ
Subjt:  TWKMQSYVWSSVSDQRVVTHITGGNFVQIFITINGWLRNFLWAQASQ

Arabidopsis top hits

e value

%identity

Alignment

ATCG00350.1 Photosystem I, PsaA/PsaB protein

2.7e-17

80.85

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Query:  TWKMQSYVWSSVSDQRVVTHITGGNFVQIFITINGWLRNFLWAQASQ
        +WKMQS VW S+SDQ VVTHITGGNF Q  ITINGWLR+FLWAQASQ
Subjt:  TWKMQSYVWSSVSDQRVVTHITGGNFVQIFITINGWLRNFLWAQASQ

Sequences

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CDS sequence

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ATGACTTGGAAAATGCAGTCATATGTTTGGAGTAGTGTAAGTGATCAAAGGGTAGTAACTCATATTACGGGAGGAAACTTTGTGCAGATTTTTATTACTATTAAT
GGGTGGCTTCGCAATTTCTTATGGGCACAAGCATCCCAGGGACTAAATTGTCATAGACCAAAATTCAGAGACTAA

mRNA sequence

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ATGACTTGGAAAATGCAGTCATATGTTTGGAGTAGTGTAAGTGATCAAAGGGTAGTAACTCATATTACGGGAGGAAACTTTGTGCAGATTTTTATTACTATTAAT
GGGTGGCTTCGCAATTTCTTATGGGCACAAGCATCCCAGGGACTAAATTGTCATAGACCAAAATTCAGAGACTAA

Protein sequence

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MTWKMQSYVWSSVSDQRVVTHITGGNFVQIFITINGWLRNFLWAQASQGLNCHRPKFRD

CaUC02G031790 (gene) of Watermelon (USVL246-FR2) v1 genome