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CaUC02G031850 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC02G031850
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptioncytochrome b6f complex subunit (petM), putative
Genome locationCiama_Chr02:6304376..6311559
RNA-Seq ExpressionCaUC02G031850
SyntenyCaUC02G031850
Gene Ontology termsGO:0009512 - cytochrome b6f complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR012595 - PetM of cytochrome b6/f complex subunit 7


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572003.1 Cytochrome b6-f complex subunit 7, partial [Cucurbita argyrosperma subsp. sororia]7.2e-5393.55Show/hide
Query:  ATASATLSPAMSTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAIIN
        AT SATLSP +STAAPIAAGSRRQR TNVHYITGLNSF GLKAHNN+ SLGLPVCADQSFANIVSSLKYPSKGKGK+GGGALSSTCNAAGEIFRIAAIIN
Subjt:  ATASATLSPAMSTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAIIN

Query:  GLVLVGVAVGFVLLRIEASVEEAE
        GLVLVGVAVGFVLLRIEASVEEAE
Subjt:  GLVLVGVAVGFVLLRIEASVEEAE

XP_008454894.1 PREDICTED: uncharacterized protein LOC103495201 [Cucumis melo]4.5e-5596.8Show/hide
Query:  MATASATLSPAMSTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAII
        MATASATLS AMSTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFA IVSSLKYPSKGKGK+GGGALSSTCNAAGEIFRIAAII
Subjt:  MATASATLSPAMSTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAII

Query:  NGLVLVGVAVGFVLLRIEASVEEAE
        NGLVL+GVAVGFVLLRIEASVEEAE
Subjt:  NGLVLVGVAVGFVLLRIEASVEEAE

XP_022972366.1 uncharacterized protein LOC111470941 [Cucurbita maxima]1.3e-5495.97Show/hide
Query:  ATASATLSPAMSTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAIIN
        ATASATLSPA+STAAPIAAGSRRQR TNVHYITGLNSFGGLKAHNN+ SLGLPVCADQSFANIVSSLKYPSKGKGK+GGGALSSTCNAAGEIFRIAAIIN
Subjt:  ATASATLSPAMSTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAIIN

Query:  GLVLVGVAVGFVLLRIEASVEEAE
        GLVLVGVAVGFVLLRIEASVEEAE
Subjt:  GLVLVGVAVGFVLLRIEASVEEAE

XP_023554105.1 uncharacterized protein LOC111811473 [Cucurbita pepo subsp. pepo]1.9e-5394.35Show/hide
Query:  ATASATLSPAMSTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAIIN
        ATASATLSP +STAAPIAAGSRRQR  NVHYITGLNSFGGLKAHNN+ SLGLPVCADQSFANIVSSLKYPSKGKGK+GGGALSSTCNAAGEIFRIAAIIN
Subjt:  ATASATLSPAMSTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAIIN

Query:  GLVLVGVAVGFVLLRIEASVEEAE
        GLVLVGVAVGFVLLRIEASVEEAE
Subjt:  GLVLVGVAVGFVLLRIEASVEEAE

XP_038887487.1 uncharacterized protein LOC120077620 [Benincasa hispida]9.0e-5696.8Show/hide
Query:  MATASATLSPAMSTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAII
        MATASATLSPAM TAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANI+SSLKYPSKGKGK+GGGALSSTCNAAGEIFRIAAII
Subjt:  MATASATLSPAMSTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAII

Query:  NGLVLVGVAVGFVLLRIEASVEEAE
        NGLVL+GVAVGFVLLRIEASVEEAE
Subjt:  NGLVLVGVAVGFVLLRIEASVEEAE

TrEMBL top hitse value%identityAlignment
A0A0A0K4W4 Uncharacterized protein7.5e-5681.01Show/hide
Query:  PFIFLHTNPLFPILLIIFNFPQFSLPLRHQS--MATASATLSPAMSTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSS
        P +FL  NPLFP    +     FSLPL   +  MATASATLS AMS+AAPI+AGSRRQRQTN H+I+GLNSF GLKAHNNVVSLGLPVCADQSFA IVSS
Subjt:  PFIFLHTNPLFPILLIIFNFPQFSLPLRHQS--MATASATLSPAMSTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSS

Query:  LKYPSKGKGKSGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASVEEAE
        LKYPSKGKGK+GGGALSSTCNAAGEIFRIAAIINGLVL+GVAVGFVLLRIEASVEEAE
Subjt:  LKYPSKGKGKSGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASVEEAE

A0A1S3C0U4 uncharacterized protein LOC1034952012.2e-5596.8Show/hide
Query:  MATASATLSPAMSTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAII
        MATASATLS AMSTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFA IVSSLKYPSKGKGK+GGGALSSTCNAAGEIFRIAAII
Subjt:  MATASATLSPAMSTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAII

Query:  NGLVLVGVAVGFVLLRIEASVEEAE
        NGLVL+GVAVGFVLLRIEASVEEAE
Subjt:  NGLVLVGVAVGFVLLRIEASVEEAE

A0A6J1C3G5 uncharacterized protein LOC1110080071.8e-4990.62Show/hide
Query:  MATASATLSPAMSTAAPIAAGSRR-QRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKS--GGGALSSTCNAAGEIFRIA
        MATASATLSPAMSTAAPIAAGSRR QR  NVHYITGLNSFGGLKAHNNVVSLGLP+C D SFA IVSSLKYPSKGKGK+  GGGALSSTCNAAGEIFRIA
Subjt:  MATASATLSPAMSTAAPIAAGSRR-QRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKS--GGGALSSTCNAAGEIFRIA

Query:  AIINGLVLVGVAVGFVLLRIEASVEEAE
        AIINGLVLVGVAVGFVLLRIEA VEE E
Subjt:  AIINGLVLVGVAVGFVLLRIEASVEEAE

A0A6J1GND2 uncharacterized protein LOC1114555031.3e-5292.74Show/hide
Query:  ATASATLSPAMSTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAIIN
        AT SATLSP +STAAPIAAGSRRQR TNVHYITGLNSF GLKAHNN+ SLGLPVCADQSFA+IVSSLKYPSKGKGK+GGGALSSTCNAAGEIFRIAAIIN
Subjt:  ATASATLSPAMSTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAIIN

Query:  GLVLVGVAVGFVLLRIEASVEEAE
        GLVLVGVAVGFVLLRIEASVEEAE
Subjt:  GLVLVGVAVGFVLLRIEASVEEAE

A0A6J1I5T0 uncharacterized protein LOC1114709416.3e-5595.97Show/hide
Query:  ATASATLSPAMSTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAIIN
        ATASATLSPA+STAAPIAAGSRRQR TNVHYITGLNSFGGLKAHNN+ SLGLPVCADQSFANIVSSLKYPSKGKGK+GGGALSSTCNAAGEIFRIAAIIN
Subjt:  ATASATLSPAMSTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAIIN

Query:  GLVLVGVAVGFVLLRIEASVEEAE
        GLVLVGVAVGFVLLRIEASVEEAE
Subjt:  GLVLVGVAVGFVLLRIEASVEEAE

SwissProt top hitse value%identityAlignment
P80883 Cytochrome b6-f complex subunit 7 (Fragment)1.2e-0783.33Show/hide
Query:  NAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASVEE
        NAA EIFRIAA++NGL LVGVA+GFVLLRIEA+VEE
Subjt:  NAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASVEE

Arabidopsis top hitse value%identityAlignment
AT2G26500.1 cytochrome b6f complex subunit (petM), putative2.2e-2859.52Show/hide
Query:  ATASATLSPAMSTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNN-VVSLGLPVCADQSFANIVSSLKYPSKGKGKSG-GGALSSTCNAAGEIFRIAAI
        A A A +S   S     +  ++++ +  V YITGLNS+GGLKA NN VVS+G P+C +Q FAN+V SL      KG+ G GGALS+TCNA GEIF+IAAI
Subjt:  ATASATLSPAMSTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNN-VVSLGLPVCADQSFANIVSSLKYPSKGKGKSG-GGALSSTCNAAGEIFRIAAI

Query:  INGLVLVGVAVGFVLLRIEASVEEAE
        +N L LVGVAVGFVLLRIE SVEEAE
Subjt:  INGLVLVGVAVGFVLLRIEASVEEAE

AT2G26500.2 cytochrome b6f complex subunit (petM), putative2.2e-2859.52Show/hide
Query:  ATASATLSPAMSTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNN-VVSLGLPVCADQSFANIVSSLKYPSKGKGKSG-GGALSSTCNAAGEIFRIAAI
        A A A +S   S     +  ++++ +  V YITGLNS+GGLKA NN VVS+G P+C +Q FAN+V SL      KG+ G GGALS+TCNA GEIF+IAAI
Subjt:  ATASATLSPAMSTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNN-VVSLGLPVCADQSFANIVSSLKYPSKGKGKSG-GGALSSTCNAAGEIFRIAAI

Query:  INGLVLVGVAVGFVLLRIEASVEEAE
        +N L LVGVAVGFVLLRIE SVEEAE
Subjt:  INGLVLVGVAVGFVLLRIEASVEEAE

AT2G26500.3 cytochrome b6f complex subunit (petM), putative5.0e-1240Show/hide
Query:  ATASATLSPAMSTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNN-VVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAII
        A A A +S   S     +  ++++ +  V YITGLNS+GGLKA NN VVS+G P+C +Q FAN+V SLK                               
Subjt:  ATASATLSPAMSTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNN-VVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAII

Query:  NGLVLVGVAVGFVLLRIEASVEEAE
              G  VGFVLLRIE SVEEAE
Subjt:  NGLVLVGVAVGFVLLRIEASVEEAE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGTTGGAGTTGGCTGCAGGTGGTGGTTGTCGGAGGTGGTCACTGGAGTTGGTTGTTAGAGGGGTTGCCAAATTTGTCGATGCCACCCAAATTCCTCTTACCTTATC
CATTTCCCCCTTCATCTTTCTCCATACAAACCCCCTTTTTCCCATCCTTCTCATCATCTTCAATTTCCCCCAATTTTCTCTTCCACTCAGGCATCAATCAATGGCTACAG
CCTCCGCTACCCTCTCGCCGGCCATGTCCACCGCCGCCCCCATCGCCGCCGGTTCAAGGCGGCAGAGGCAAACCAATGTCCATTACATAACTGGGCTTAACTCATTTGGT
GGCTTGAAAGCTCACAACAATGTCGTCTCCTTGGGCCTTCCCGTTTGTGCTGATCAATCATTTGCTAACATTGTGAGCTCTTTGAAATACCCATCAAAGGGAAAAGGCAA
AAGCGGCGGTGGAGCTCTTTCTTCCACTTGTAATGCCGCCGGTGAGATTTTCAGGATTGCTGCCATTATCAATGGGCTTGTTCTTGTTGGAGTGGCTGTGGGGTTTGTTC
TTCTTCGGATTGAAGCATCTGTGGAGGAGGCAGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGTTGGAGTTGGCTGCAGGTGGTGGTTGTCGGAGGTGGTCACTGGAGTTGGTTGTTAGAGGGGTTGCCAAATTTGTCGATGCCACCCAAATTCCTCTTACCTTATC
CATTTCCCCCTTCATCTTTCTCCATACAAACCCCCTTTTTCCCATCCTTCTCATCATCTTCAATTTCCCCCAATTTTCTCTTCCACTCAGGCATCAATCAATGGCTACAG
CCTCCGCTACCCTCTCGCCGGCCATGTCCACCGCCGCCCCCATCGCCGCCGGTTCAAGGCGGCAGAGGCAAACCAATGTCCATTACATAACTGGGCTTAACTCATTTGGT
GGCTTGAAAGCTCACAACAATGTCGTCTCCTTGGGCCTTCCCGTTTGTGCTGATCAATCATTTGCTAACATTGTGAGCTCTTTGAAATACCCATCAAAGGGAAAAGGCAA
AAGCGGCGGTGGAGCTCTTTCTTCCACTTGTAATGCCGCCGGTGAGATTTTCAGGATTGCTGCCATTATCAATGGGCTTGTTCTTGTTGGAGTGGCTGTGGGGTTTGTTC
TTCTTCGGATTGAAGCATCTGTGGAGGAGGCAGAATGA
Protein sequenceShow/hide protein sequence
MLLELAAGGGCRRWSLELVVRGVAKFVDATQIPLTLSISPFIFLHTNPLFPILLIIFNFPQFSLPLRHQSMATASATLSPAMSTAAPIAAGSRRQRQTNVHYITGLNSFG
GLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASVEEAE