; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC02G032210 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC02G032210
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionCold regulated protein 27, putative isoform 2
Genome locationCiama_Chr02:6905947..6911786
RNA-Seq ExpressionCaUC02G032210
SyntenyCaUC02G032210
Gene Ontology termsGO:0009409 - response to cold (biological process)
GO:0042752 - regulation of circadian rhythm (biological process)
InterPro domainsIPR044678 - Cold-regulated protein 27/28


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031301.1 Cold regulated protein 27, putative isoform 2 [Cucumis melo var. makuwa]3.0e-9576.92Show/hide
Query:  MADSHTPSSISPPPLTDRRQSLMPP--SAADSTRFNSQSDSSSITVDGSNRFWHFNHSLQLDAEQTHWTDEKHRLYLDSLEASFVQGLHQHRRRDALSTN
        M DSHTPS +S  PL D RQS MPP  S  DST FNS+S SSSITVDGS RF   +H LQLDAEQTHWTDEKHR YLDSLEASFVQGLHQHRR  ALS+ 
Subjt:  MADSHTPSSISPPPLTDRRQSLMPP--SAADSTRFNSQSDSSSITVDGSNRFWHFNHSLQLDAEQTHWTDEKHRLYLDSLEASFVQGLHQHRRRDALSTN

Query:  QKIRRKPIMPNITSSELMILQDASWQKANIGRNDPLLDNTADSPAILEDLWINRFPSAGKQCTLETPDLLEECGNCSDRRRIRNTTNSCGSARSSQQIPP
        QK+RRKPIM + +SSELM+LQDASWQKANIGRNDPLLD TADSPAILEDLWIN FPSAGKQC+LETPDLLEECG+CSDRR IR+ TNSCGSAR+SQQ  P
Subjt:  QKIRRKPIMPNITSSELMILQDASWQKANIGRNDPLLDNTADSPAILEDLWINRFPSAGKQCTLETPDLLEECGNCSDRRRIRNTTNSCGSARSSQQIPP

Query:  CCHDPNTIITEVSDQNFVDDCPGELSGAMTIAKRLRKASSDSSGNDQ
        CC +  TIITEVSDQNFVD+ PGELSG M  AKRL+KASS    N Q
Subjt:  CCHDPNTIITEVSDQNFVDDCPGELSGAMTIAKRLRKASSDSSGNDQ

XP_004136978.1 cold-regulated protein 27 isoform X1 [Cucumis sativus]1.5e-9174.6Show/hide
Query:  MADSHTPSSISPPPLTDRRQSLMPPSAA--DSTRFNSQSDSSSITVDGSNRFWHFNHSLQLDAEQTHWTDEKHRLYLDSLEASFVQGLHQHRRRDALSTN
        M DSHTPS +S PPL D RQS MP ++A  DST FNS+S SSSIT+DGS  F+  +H  QLDAEQTHWTDEKHRLYLDSLEASFVQ LHQHR   ALS  
Subjt:  MADSHTPSSISPPPLTDRRQSLMPPSAA--DSTRFNSQSDSSSITVDGSNRFWHFNHSLQLDAEQTHWTDEKHRLYLDSLEASFVQGLHQHRRRDALSTN

Query:  QKIRRKPIMPNITSSELMILQDASWQKANIGRNDPLLDNTADSPAILEDLWINRFPSAGKQCTLETPDLLEECGNCSDRRRIRNTTNSCGSARSSQQIPP
        QK+RRKPI P+I+SSELM+LQDASWQKANIGRNDPLLD TADSPAILEDLWIN FPSAGKQC+LETPDLLEEC +CSDRR IR  TNSC SAR+SQ   P
Subjt:  QKIRRKPIMPNITSSELMILQDASWQKANIGRNDPLLDNTADSPAILEDLWINRFPSAGKQCTLETPDLLEECGNCSDRRRIRNTTNSCGSARSSQQIPP

Query:  CCHDPNTIITEVSDQNFVDDCPGELSGAMTIAKRLRKASSDSSGNDQL
        CC +  TIITEVSDQNFVD+ PGELS  M IAKRL+KASSD S + Q+
Subjt:  CCHDPNTIITEVSDQNFVDDCPGELSGAMTIAKRLRKASSDSSGNDQL

XP_008454952.1 PREDICTED: uncharacterized protein LOC103495241 isoform X1 [Cucumis melo]2.3e-9576.61Show/hide
Query:  MADSHTPSSISPPPLTDRRQSLMPP--SAADSTRFNSQSDSSSITVDGSNRFWHFNHSLQLDAEQTHWTDEKHRLYLDSLEASFVQGLHQHRRRDALSTN
        M DSHTPS +S  PL D RQS MPP  S  DST FNS+S SSSITVDGS RF   +H LQLDAEQTHWTDEKHR YLDSLEASFVQGLHQHRR  ALS+ 
Subjt:  MADSHTPSSISPPPLTDRRQSLMPP--SAADSTRFNSQSDSSSITVDGSNRFWHFNHSLQLDAEQTHWTDEKHRLYLDSLEASFVQGLHQHRRRDALSTN

Query:  QKIRRKPIMPNITSSELMILQDASWQKANIGRNDPLLDNTADSPAILEDLWINRFPSAGKQCTLETPDLLEECGNCSDRRRIRNTTNSCGSARSSQQIPP
        QK+RRKPIM + +SSELM+LQDASWQKANIGRNDPLLD TADSPAILEDLWIN FPSAGKQC+LETPDLLEECG+CSDRR IR+ TNSCGSAR+SQQ  P
Subjt:  QKIRRKPIMPNITSSELMILQDASWQKANIGRNDPLLDNTADSPAILEDLWINRFPSAGKQCTLETPDLLEECGNCSDRRRIRNTTNSCGSARSSQQIPP

Query:  CCHDPNTIITEVSDQNFVDDCPGELSGAMTIAKRLRKASSDSSGNDQL
        CC +  TIITEVSDQNFVD+ PGELSG M  AKRL+KASS    N Q+
Subjt:  CCHDPNTIITEVSDQNFVDDCPGELSGAMTIAKRLRKASSDSSGNDQL

XP_022952080.1 uncharacterized protein LOC111454842 isoform X1 [Cucurbita moschata]1.7e-8768.63Show/hide
Query:  MADSHTPSSISPPPLTDRRQSLMPPSAADSTRFNSQSDSSSITVDGSN---RFWHFNHSLQLDAEQTHWTDEKHRLYLDSLEASFVQGLHQHRRRDALST
        M D+HTPSS+SPP     R+S M  SA+D TR NS+S SSS TVD S         +H  QLDA QTHWT+EKHRL+LDSLEASFVQ LH++R   ALS+
Subjt:  MADSHTPSSISPPPLTDRRQSLMPPSAADSTRFNSQSDSSSITVDGSN---RFWHFNHSLQLDAEQTHWTDEKHRLYLDSLEASFVQGLHQHRRRDALST

Query:  NQKIRRKPIMPNITSSELMILQDASWQKANIGRNDPLLDNTADSPAILEDLWINRFPSAGKQCTLETPDLLEECGNCSDRRRIRNTTNSCGSARSSQQIP
         QK+RRKPIMPNI+SSE M+LQDASWQKAN+GR DPLLD TADSPAILED+WIN FPSAG QCTLET D+LEECG+CSDR  IRN TNS  SARSSQQIP
Subjt:  NQKIRRKPIMPNITSSELMILQDASWQKANIGRNDPLLDNTADSPAILEDLWINRFPSAGKQCTLETPDLLEECGNCSDRRRIRNTTNSCGSARSSQQIP

Query:  PCCHDPNTIITEVSDQNFVDDCPGELSGAMTIAKRLRKASSDSSGNDQLELVLTL
        PCC D +TI+TEVSDQNFVD  PGELS    I KRL+KASSDSSGN++++L + +
Subjt:  PCCHDPNTIITEVSDQNFVDDCPGELSGAMTIAKRLRKASSDSSGNDQLELVLTL

XP_038887003.1 cold-regulated protein 27 isoform X1 [Benincasa hispida]1.8e-10882.93Show/hide
Query:  MADSHTPSSISPPPLTDRRQSLMPPSAADSTRFNSQSDSSSITVDGSNRFWHFNHSLQLDAEQTHWTDEKHRLYLDSLEASFVQGLHQHRRRDALSTNQK
        M  SHT SSISPPPL DRRQSLMPPSA+DSTR  SQS SSSIT+DGSN F + +HSLQLDAEQTHWTDEKHRLYLDSLEASFVQGLHQHRRR ALS  QK
Subjt:  MADSHTPSSISPPPLTDRRQSLMPPSAADSTRFNSQSDSSSITVDGSNRFWHFNHSLQLDAEQTHWTDEKHRLYLDSLEASFVQGLHQHRRRDALSTNQK

Query:  IRRKPIMPNITSSELMILQDASWQKANIGRNDPLLDNTADSPAILEDLWINRFPSAGKQCTLETPDLLEECGNCSDRRRIRNTTNSCGSARSSQQIPPCC
        +  KP MPNI+SSELMILQDASWQKANIGRNDP LD TADSPAILEDLWINRFPSAGKQCT E PD+LEECG+CSDRR +RNT+NSCGSARSSQQIPPCC
Subjt:  IRRKPIMPNITSSELMILQDASWQKANIGRNDPLLDNTADSPAILEDLWINRFPSAGKQCTLETPDLLEECGNCSDRRRIRNTTNSCGSARSSQQIPPCC

Query:  HDPNTIITEVSDQNFVDDCPGELSGAMTIAKRLRKASSDSSGNDQL
         D N IITEVSDQNFVDD P ELSG + IAKRL+K SSDSSGNDQ+
Subjt:  HDPNTIITEVSDQNFVDDCPGELSGAMTIAKRLRKASSDSSGNDQL

TrEMBL top hitse value%identityAlignment
A0A0A0K7Z2 Uncharacterized protein7.4e-9274.6Show/hide
Query:  MADSHTPSSISPPPLTDRRQSLMPPSAA--DSTRFNSQSDSSSITVDGSNRFWHFNHSLQLDAEQTHWTDEKHRLYLDSLEASFVQGLHQHRRRDALSTN
        M DSHTPS +S PPL D RQS MP ++A  DST FNS+S SSSIT+DGS  F+  +H  QLDAEQTHWTDEKHRLYLDSLEASFVQ LHQHR   ALS  
Subjt:  MADSHTPSSISPPPLTDRRQSLMPPSAA--DSTRFNSQSDSSSITVDGSNRFWHFNHSLQLDAEQTHWTDEKHRLYLDSLEASFVQGLHQHRRRDALSTN

Query:  QKIRRKPIMPNITSSELMILQDASWQKANIGRNDPLLDNTADSPAILEDLWINRFPSAGKQCTLETPDLLEECGNCSDRRRIRNTTNSCGSARSSQQIPP
        QK+RRKPI P+I+SSELM+LQDASWQKANIGRNDPLLD TADSPAILEDLWIN FPSAGKQC+LETPDLLEEC +CSDRR IR  TNSC SAR+SQ   P
Subjt:  QKIRRKPIMPNITSSELMILQDASWQKANIGRNDPLLDNTADSPAILEDLWINRFPSAGKQCTLETPDLLEECGNCSDRRRIRNTTNSCGSARSSQQIPP

Query:  CCHDPNTIITEVSDQNFVDDCPGELSGAMTIAKRLRKASSDSSGNDQL
        CC +  TIITEVSDQNFVD+ PGELS  M IAKRL+KASSD S + Q+
Subjt:  CCHDPNTIITEVSDQNFVDDCPGELSGAMTIAKRLRKASSDSSGNDQL

A0A1S3BZU8 uncharacterized protein LOC103495241 isoform X11.1e-9576.61Show/hide
Query:  MADSHTPSSISPPPLTDRRQSLMPP--SAADSTRFNSQSDSSSITVDGSNRFWHFNHSLQLDAEQTHWTDEKHRLYLDSLEASFVQGLHQHRRRDALSTN
        M DSHTPS +S  PL D RQS MPP  S  DST FNS+S SSSITVDGS RF   +H LQLDAEQTHWTDEKHR YLDSLEASFVQGLHQHRR  ALS+ 
Subjt:  MADSHTPSSISPPPLTDRRQSLMPP--SAADSTRFNSQSDSSSITVDGSNRFWHFNHSLQLDAEQTHWTDEKHRLYLDSLEASFVQGLHQHRRRDALSTN

Query:  QKIRRKPIMPNITSSELMILQDASWQKANIGRNDPLLDNTADSPAILEDLWINRFPSAGKQCTLETPDLLEECGNCSDRRRIRNTTNSCGSARSSQQIPP
        QK+RRKPIM + +SSELM+LQDASWQKANIGRNDPLLD TADSPAILEDLWIN FPSAGKQC+LETPDLLEECG+CSDRR IR+ TNSCGSAR+SQQ  P
Subjt:  QKIRRKPIMPNITSSELMILQDASWQKANIGRNDPLLDNTADSPAILEDLWINRFPSAGKQCTLETPDLLEECGNCSDRRRIRNTTNSCGSARSSQQIPP

Query:  CCHDPNTIITEVSDQNFVDDCPGELSGAMTIAKRLRKASSDSSGNDQL
        CC +  TIITEVSDQNFVD+ PGELSG M  AKRL+KASS    N Q+
Subjt:  CCHDPNTIITEVSDQNFVDDCPGELSGAMTIAKRLRKASSDSSGNDQL

A0A5D3C4A3 Cold regulated protein 27, putative isoform 21.4e-9576.92Show/hide
Query:  MADSHTPSSISPPPLTDRRQSLMPP--SAADSTRFNSQSDSSSITVDGSNRFWHFNHSLQLDAEQTHWTDEKHRLYLDSLEASFVQGLHQHRRRDALSTN
        M DSHTPS +S  PL D RQS MPP  S  DST FNS+S SSSITVDGS RF   +H LQLDAEQTHWTDEKHR YLDSLEASFVQGLHQHRR  ALS+ 
Subjt:  MADSHTPSSISPPPLTDRRQSLMPP--SAADSTRFNSQSDSSSITVDGSNRFWHFNHSLQLDAEQTHWTDEKHRLYLDSLEASFVQGLHQHRRRDALSTN

Query:  QKIRRKPIMPNITSSELMILQDASWQKANIGRNDPLLDNTADSPAILEDLWINRFPSAGKQCTLETPDLLEECGNCSDRRRIRNTTNSCGSARSSQQIPP
        QK+RRKPIM + +SSELM+LQDASWQKANIGRNDPLLD TADSPAILEDLWIN FPSAGKQC+LETPDLLEECG+CSDRR IR+ TNSCGSAR+SQQ  P
Subjt:  QKIRRKPIMPNITSSELMILQDASWQKANIGRNDPLLDNTADSPAILEDLWINRFPSAGKQCTLETPDLLEECGNCSDRRRIRNTTNSCGSARSSQQIPP

Query:  CCHDPNTIITEVSDQNFVDDCPGELSGAMTIAKRLRKASSDSSGNDQ
        CC +  TIITEVSDQNFVD+ PGELSG M  AKRL+KASS    N Q
Subjt:  CCHDPNTIITEVSDQNFVDDCPGELSGAMTIAKRLRKASSDSSGNDQ

A0A6J1GJA3 uncharacterized protein LOC111454842 isoform X24.2e-8769.88Show/hide
Query:  MADSHTPSSISPPPLTDRRQSLMPPSAADSTRFNSQSDSSSITVDGSN---RFWHFNHSLQLDAEQTHWTDEKHRLYLDSLEASFVQGLHQHRRRDALST
        M D+HTPSS+SPP     R+S M  SA+D TR NS+S SSS TVD S         +H  QLDA QTHWT+EKHRL+LDSLEASFVQ LH++R   ALS+
Subjt:  MADSHTPSSISPPPLTDRRQSLMPPSAADSTRFNSQSDSSSITVDGSN---RFWHFNHSLQLDAEQTHWTDEKHRLYLDSLEASFVQGLHQHRRRDALST

Query:  NQKIRRKPIMPNITSSELMILQDASWQKANIGRNDPLLDNTADSPAILEDLWINRFPSAGKQCTLETPDLLEECGNCSDRRRIRNTTNSCGSARSSQQIP
         QK+RRKPIMPNI+SSE M+LQDASWQKAN+GR DPLLD TADSPAILED+WIN FPSAG QCTLET D+LEECG+CSDR  IRN TNS  SARSSQQIP
Subjt:  NQKIRRKPIMPNITSSELMILQDASWQKANIGRNDPLLDNTADSPAILEDLWINRFPSAGKQCTLETPDLLEECGNCSDRRRIRNTTNSCGSARSSQQIP

Query:  PCCHDPNTIITEVSDQNFVDDCPGELSGAMTIAKRLRKASSDSSGNDQL
        PCC D +TI+TEVSDQNFVD  PGELS    I KRL+KASSDSSGN+++
Subjt:  PCCHDPNTIITEVSDQNFVDDCPGELSGAMTIAKRLRKASSDSSGNDQL

A0A6J1GKR5 uncharacterized protein LOC111454842 isoform X18.5e-8868.63Show/hide
Query:  MADSHTPSSISPPPLTDRRQSLMPPSAADSTRFNSQSDSSSITVDGSN---RFWHFNHSLQLDAEQTHWTDEKHRLYLDSLEASFVQGLHQHRRRDALST
        M D+HTPSS+SPP     R+S M  SA+D TR NS+S SSS TVD S         +H  QLDA QTHWT+EKHRL+LDSLEASFVQ LH++R   ALS+
Subjt:  MADSHTPSSISPPPLTDRRQSLMPPSAADSTRFNSQSDSSSITVDGSN---RFWHFNHSLQLDAEQTHWTDEKHRLYLDSLEASFVQGLHQHRRRDALST

Query:  NQKIRRKPIMPNITSSELMILQDASWQKANIGRNDPLLDNTADSPAILEDLWINRFPSAGKQCTLETPDLLEECGNCSDRRRIRNTTNSCGSARSSQQIP
         QK+RRKPIMPNI+SSE M+LQDASWQKAN+GR DPLLD TADSPAILED+WIN FPSAG QCTLET D+LEECG+CSDR  IRN TNS  SARSSQQIP
Subjt:  NQKIRRKPIMPNITSSELMILQDASWQKANIGRNDPLLDNTADSPAILEDLWINRFPSAGKQCTLETPDLLEECGNCSDRRRIRNTTNSCGSARSSQQIP

Query:  PCCHDPNTIITEVSDQNFVDDCPGELSGAMTIAKRLRKASSDSSGNDQLELVLTL
        PCC D +TI+TEVSDQNFVD  PGELS    I KRL+KASSDSSGN++++L + +
Subjt:  PCCHDPNTIITEVSDQNFVDDCPGELSGAMTIAKRLRKASSDSSGNDQLELVLTL

SwissProt top hitse value%identityAlignment
Q8L8T7 Cold-regulated protein 274.4e-0929.06Show/hide
Query:  STRFNSQSDSSS---ITVDGSNRFWHFNHSLQLDAEQTHWTDEKHRLYLDSLEASFVQGLHQHRRRDALSTNQKIR--------RKPIMPNITSSELMIL
        S RF+  SD SS    +V+G        +S   +  +T WT+EKH LYL S+EASFV  L  +    AL  N+ +         RKP     +  +  +L
Subjt:  STRFNSQSDSSS---ITVDGSNRFWHFNHSLQLDAEQTHWTDEKHRLYLDSLEASFVQGLHQHRRRDALSTNQKIR--------RKPIMPNITSSELMIL

Query:  QDASWQKANIGRNDPLLD--NTADSPAILEDLWINRFPSAGKQCTLETPDLLEECGNCSDRRRIRNTTNSCGSARSSQQIPPCCHDPNTII---TEVSDQ
         D  WQK N+ + +  ++  +  +S   L   WI  +    K     T +   +  + S+ ++      S GSA S +Q+     D + I     EVSDQ
Subjt:  QDASWQKANIGRNDPLLD--NTADSPAILEDLWINRFPSAGKQCTLETPDLLEECGNCSDRRRIRNTTNSCGSARSSQQIPPCCHDPNTII---TEVSDQ

Query:  NFVDDCPGELSGAMTIAKRLRKA-SSDSSGNDQL
        NFV++    + G    +K+++    S+SS  DQ+
Subjt:  NFVDDCPGELSGAMTIAKRLRKA-SSDSSGNDQL

Q8L983 Cold-regulated protein 286.6e-0527.12Show/hide
Query:  SAADSTRFNSQSDSSSITVDGSNRFWHFNHSLQLDAEQTHWTDEKHRLYLDSLEASFVQGLHQ---------HRRRDALSTNQKIRRKPIMPNITSSELM
        S ++ST  NS    S +T + S      +   +LD E T WT+EKH  YLD LE+SFV+ L+           R RD  S + K          ++ +  
Subjt:  SAADSTRFNSQSDSSSITVDGSNRFWHFNHSLQLDAEQTHWTDEKHRLYLDSLEASFVQGLHQ---------HRRRDALSTNQKIRRKPIMPNITSSELM

Query:  ILQDASWQKANIGRNDPLLDNTADSPAILEDLWINRFPSAGKQCTLETPDLLEECGNCSDRRRIRN---TTNSCGSARSSQQIPPCCHDPNTIITEVSDQ
        +LQ+  WQK N G+    L+ +++           RF                       R  +RN    +N   +  ++ Q    CHD  T  +E S Q
Subjt:  ILQDASWQKANIGRNDPLLDNTADSPAILEDLWINRFPSAGKQCTLETPDLLEECGNCSDRRRIRN---TTNSCGSARSSQQIPPCCHDPNTIITEVSDQ

Query:  NFVDDCPGELSGAMTIAKRLRKASSDSSGNDQLELV
        NF ++   E  G ++  KR R+A++D S   + ++V
Subjt:  NFVDDCPGELSGAMTIAKRLRKASSDSSGNDQLELV

Arabidopsis top hitse value%identityAlignment
AT4G33980.1 BEST Arabidopsis thaliana protein match is: cold regulated gene 27 (TAIR:AT5G42900.2)4.7e-0627.12Show/hide
Query:  SAADSTRFNSQSDSSSITVDGSNRFWHFNHSLQLDAEQTHWTDEKHRLYLDSLEASFVQGLHQ---------HRRRDALSTNQKIRRKPIMPNITSSELM
        S ++ST  NS    S +T + S      +   +LD E T WT+EKH  YLD LE+SFV+ L+           R RD  S + K          ++ +  
Subjt:  SAADSTRFNSQSDSSSITVDGSNRFWHFNHSLQLDAEQTHWTDEKHRLYLDSLEASFVQGLHQ---------HRRRDALSTNQKIRRKPIMPNITSSELM

Query:  ILQDASWQKANIGRNDPLLDNTADSPAILEDLWINRFPSAGKQCTLETPDLLEECGNCSDRRRIRN---TTNSCGSARSSQQIPPCCHDPNTIITEVSDQ
        +LQ+  WQK N G+    L+ +++           RF                       R  +RN    +N   +  ++ Q    CHD  T  +E S Q
Subjt:  ILQDASWQKANIGRNDPLLDNTADSPAILEDLWINRFPSAGKQCTLETPDLLEECGNCSDRRRIRN---TTNSCGSARSSQQIPPCCHDPNTIITEVSDQ

Query:  NFVDDCPGELSGAMTIAKRLRKASSDSSGNDQLELV
        NF ++   E  G ++  KR R+A++D S   + ++V
Subjt:  NFVDDCPGELSGAMTIAKRLRKASSDSSGNDQLELV

AT4G33980.2 FUNCTIONS IN: molecular_function unknown4.7e-0627.12Show/hide
Query:  SAADSTRFNSQSDSSSITVDGSNRFWHFNHSLQLDAEQTHWTDEKHRLYLDSLEASFVQGLHQ---------HRRRDALSTNQKIRRKPIMPNITSSELM
        S ++ST  NS    S +T + S      +   +LD E T WT+EKH  YLD LE+SFV+ L+           R RD  S + K          ++ +  
Subjt:  SAADSTRFNSQSDSSSITVDGSNRFWHFNHSLQLDAEQTHWTDEKHRLYLDSLEASFVQGLHQ---------HRRRDALSTNQKIRRKPIMPNITSSELM

Query:  ILQDASWQKANIGRNDPLLDNTADSPAILEDLWINRFPSAGKQCTLETPDLLEECGNCSDRRRIRN---TTNSCGSARSSQQIPPCCHDPNTIITEVSDQ
        +LQ+  WQK N G+    L+ +++           RF                       R  +RN    +N   +  ++ Q    CHD  T  +E S Q
Subjt:  ILQDASWQKANIGRNDPLLDNTADSPAILEDLWINRFPSAGKQCTLETPDLLEECGNCSDRRRIRN---TTNSCGSARSSQQIPPCCHDPNTIITEVSDQ

Query:  NFVDDCPGELSGAMTIAKRLRKASSDSSGNDQLELV
        NF ++   E  G ++  KR R+A++D S   + ++V
Subjt:  NFVDDCPGELSGAMTIAKRLRKASSDSSGNDQLELV

AT5G42900.1 cold regulated gene 273.1e-1029.06Show/hide
Query:  STRFNSQSDSSS---ITVDGSNRFWHFNHSLQLDAEQTHWTDEKHRLYLDSLEASFVQGLHQHRRRDALSTNQKIR--------RKPIMPNITSSELMIL
        S RF+  SD SS    +V+G        +S   +  +T WT+EKH LYL S+EASFV  L  +    AL  N+ +         RKP     +  +  +L
Subjt:  STRFNSQSDSSS---ITVDGSNRFWHFNHSLQLDAEQTHWTDEKHRLYLDSLEASFVQGLHQHRRRDALSTNQKIR--------RKPIMPNITSSELMIL

Query:  QDASWQKANIGRNDPLLD--NTADSPAILEDLWINRFPSAGKQCTLETPDLLEECGNCSDRRRIRNTTNSCGSARSSQQIPPCCHDPNTII---TEVSDQ
         D  WQK N+ + +  ++  +  +S   L   WI  +    K     T +   +  + S+ ++      S GSA S +Q+     D + I     EVSDQ
Subjt:  QDASWQKANIGRNDPLLD--NTADSPAILEDLWINRFPSAGKQCTLETPDLLEECGNCSDRRRIRNTTNSCGSARSSQQIPPCCHDPNTII---TEVSDQ

Query:  NFVDDCPGELSGAMTIAKRLRKA-SSDSSGNDQL
        NFV++    + G    +K+++    S+SS  DQ+
Subjt:  NFVDDCPGELSGAMTIAKRLRKA-SSDSSGNDQL

AT5G42900.2 cold regulated gene 273.1e-1029.06Show/hide
Query:  STRFNSQSDSSS---ITVDGSNRFWHFNHSLQLDAEQTHWTDEKHRLYLDSLEASFVQGLHQHRRRDALSTNQKIR--------RKPIMPNITSSELMIL
        S RF+  SD SS    +V+G        +S   +  +T WT+EKH LYL S+EASFV  L  +    AL  N+ +         RKP     +  +  +L
Subjt:  STRFNSQSDSSS---ITVDGSNRFWHFNHSLQLDAEQTHWTDEKHRLYLDSLEASFVQGLHQHRRRDALSTNQKIR--------RKPIMPNITSSELMIL

Query:  QDASWQKANIGRNDPLLD--NTADSPAILEDLWINRFPSAGKQCTLETPDLLEECGNCSDRRRIRNTTNSCGSARSSQQIPPCCHDPNTII---TEVSDQ
         D  WQK N+ + +  ++  +  +S   L   WI  +    K     T +   +  + S+ ++      S GSA S +Q+     D + I     EVSDQ
Subjt:  QDASWQKANIGRNDPLLD--NTADSPAILEDLWINRFPSAGKQCTLETPDLLEECGNCSDRRRIRNTTNSCGSARSSQQIPPCCHDPNTII---TEVSDQ

Query:  NFVDDCPGELSGAMTIAKRLRKA-SSDSSGNDQL
        NFV++    + G    +K+++    S+SS  DQ+
Subjt:  NFVDDCPGELSGAMTIAKRLRKA-SSDSSGNDQL

AT5G42900.3 cold regulated gene 271.1e-1029.18Show/hide
Query:  STRFNSQSDSSS---ITVDGSNRFWHFNHSLQLDAEQTHWTDEKHRLYLDSLEASFVQGLHQHRRRDALSTNQKIR--------RKPIMPNITSSELMIL
        S RF+  SD SS    +V+G        +S   +  +T WT+EKH LYL S+EASFV  L  +    AL  N+ +         RKP     +  +  +L
Subjt:  STRFNSQSDSSS---ITVDGSNRFWHFNHSLQLDAEQTHWTDEKHRLYLDSLEASFVQGLHQHRRRDALSTNQKIR--------RKPIMPNITSSELMIL

Query:  QDASWQKANIGRNDPLLD--NTADSPAILEDLWINRFPSAGKQCTLETPDLLEECGNCSDRRRIRNTTNSCGSARSSQQIPPCC--HDPNTIITEVSDQN
         D  WQK N+ + +  ++  +  +S   L   WI  +    K     T +   +  + S+ ++      S GSA S +Q+      HD  ++  EVSDQN
Subjt:  QDASWQKANIGRNDPLLD--NTADSPAILEDLWINRFPSAGKQCTLETPDLLEECGNCSDRRRIRNTTNSCGSARSSQQIPPCC--HDPNTIITEVSDQN

Query:  FVDDCPGELSGAMTIAKRLRKA-SSDSSGNDQL
        FV++    + G    +K+++    S+SS  DQ+
Subjt:  FVDDCPGELSGAMTIAKRLRKA-SSDSSGNDQL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAAGCGCCCATGTGGAGCCTTTTTATTTGGGTTTCGCCCCCAAAAAGAACACACCACCATTCACCTCTTCTCTCTCTCTTCCTCTTCATTTCTCCACGAGCCTCAA
TCCCCAGAGGGTTTCGGACCTAAATTTTCTCCCACCATTTTCAGTTCCATTTCCTCCTTCTATTTTTGGTTCTTTCGATCGATTTCCCCTTGTTTTTCATCCCTCCGTAA
TGGCTGACTCTCATACGCCGTCCTCCATCTCGCCGCCGCCGCTTACAGATCGACGGCAATCACTCATGCCGCCCTCTGCTGCCGACTCCACTCGCTTCAACTCTCAATCC
GACTCTTCTTCCATAACTGTTGATGGGTCCAATCGTTTTTGGCATTTTAATCATTCTCTGCAACTCGATGCGGAGCAAACACATTGGACAGATGAGAAACACAGATTATA
TCTTGATTCTTTAGAAGCATCTTTTGTCCAAGGTTTGCATCAACATAGGCGCAGGGATGCTTTGTCGACAAACCAGAAAATTCGTCGGAAGCCAATCATGCCTAATATAA
CTTCTTCAGAGTTGATGATCCTTCAAGATGCCTCCTGGCAGAAGGCTAACATTGGGAGGAATGATCCTTTATTGGATAACACTGCTGATTCTCCTGCTATTTTAGAGGAT
CTATGGATAAATCGTTTTCCTTCTGCAGGAAAACAATGTACTCTGGAAACTCCTGATCTCCTTGAAGAATGTGGAAATTGTAGTGATAGGAGACGCATAAGAAACACAAC
GAACTCCTGTGGATCTGCCAGAAGTTCACAGCAGATTCCTCCATGCTGCCATGATCCTAATACAATCATTACAGAAGTTTCAGATCAAAACTTTGTGGATGATTGTCCAG
GGGAGTTGTCTGGTGCCATGACTATTGCAAAAAGATTAAGAAAAGCTTCTTCTGATTCTTCGGGCAATGACCAGCTAGAGCTTGTTCTCACTCTGCTGCTAGGTGGCAAC
ATTTGTGTTCAAGGGATTTTGAGGACAAAGGGTATCCATTCAACTAAGGATGGTGCATCAGGGGGTCCTAAGATTTCTTCTTGGGAACTTCTTTTTGAGAAGCTTGCTAC
CTTCATTCTTGTTAGTTTACTCTCCATTGTGGAGATGGATGTG
mRNA sequenceShow/hide mRNA sequence
ATGGTAAGCGCCCATGTGGAGCCTTTTTATTTGGGTTTCGCCCCCAAAAAGAACACACCACCATTCACCTCTTCTCTCTCTCTTCCTCTTCATTTCTCCACGAGCCTCAA
TCCCCAGAGGGTTTCGGACCTAAATTTTCTCCCACCATTTTCAGTTCCATTTCCTCCTTCTATTTTTGGTTCTTTCGATCGATTTCCCCTTGTTTTTCATCCCTCCGTAA
TGGCTGACTCTCATACGCCGTCCTCCATCTCGCCGCCGCCGCTTACAGATCGACGGCAATCACTCATGCCGCCCTCTGCTGCCGACTCCACTCGCTTCAACTCTCAATCC
GACTCTTCTTCCATAACTGTTGATGGGTCCAATCGTTTTTGGCATTTTAATCATTCTCTGCAACTCGATGCGGAGCAAACACATTGGACAGATGAGAAACACAGATTATA
TCTTGATTCTTTAGAAGCATCTTTTGTCCAAGGTTTGCATCAACATAGGCGCAGGGATGCTTTGTCGACAAACCAGAAAATTCGTCGGAAGCCAATCATGCCTAATATAA
CTTCTTCAGAGTTGATGATCCTTCAAGATGCCTCCTGGCAGAAGGCTAACATTGGGAGGAATGATCCTTTATTGGATAACACTGCTGATTCTCCTGCTATTTTAGAGGAT
CTATGGATAAATCGTTTTCCTTCTGCAGGAAAACAATGTACTCTGGAAACTCCTGATCTCCTTGAAGAATGTGGAAATTGTAGTGATAGGAGACGCATAAGAAACACAAC
GAACTCCTGTGGATCTGCCAGAAGTTCACAGCAGATTCCTCCATGCTGCCATGATCCTAATACAATCATTACAGAAGTTTCAGATCAAAACTTTGTGGATGATTGTCCAG
GGGAGTTGTCTGGTGCCATGACTATTGCAAAAAGATTAAGAAAAGCTTCTTCTGATTCTTCGGGCAATGACCAGCTAGAGCTTGTTCTCACTCTGCTGCTAGGTGGCAAC
ATTTGTGTTCAAGGGATTTTGAGGACAAAGGGTATCCATTCAACTAAGGATGGTGCATCAGGGGGTCCTAAGATTTCTTCTTGGGAACTTCTTTTTGAGAAGCTTGCTAC
CTTCATTCTTGTTAGTTTACTCTCCATTGTGGAGATGGATGTG
Protein sequenceShow/hide protein sequence
MVSAHVEPFYLGFAPKKNTPPFTSSLSLPLHFSTSLNPQRVSDLNFLPPFSVPFPPSIFGSFDRFPLVFHPSVMADSHTPSSISPPPLTDRRQSLMPPSAADSTRFNSQS
DSSSITVDGSNRFWHFNHSLQLDAEQTHWTDEKHRLYLDSLEASFVQGLHQHRRRDALSTNQKIRRKPIMPNITSSELMILQDASWQKANIGRNDPLLDNTADSPAILED
LWINRFPSAGKQCTLETPDLLEECGNCSDRRRIRNTTNSCGSARSSQQIPPCCHDPNTIITEVSDQNFVDDCPGELSGAMTIAKRLRKASSDSSGNDQLELVLTLLLGGN
ICVQGILRTKGIHSTKDGASGGPKISSWELLFEKLATFILVSLLSIVEMDV