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CaUC02G032700 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC02G032700
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionGRF-type domain-containing protein
Genome locationCiama_Chr02:7846271..7849520
RNA-Seq ExpressionCaUC02G032700
SyntenyCaUC02G032700
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR010666 - Zinc finger, GRF-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8645848.1 hypothetical protein Csa_017077 [Cucumis sativus]2.3e-5980.82Show/hide
Query:  SLEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADEPEPFDDRHTNELDLIRNVCIHLTERFEEIEEEHEDEKAEWEREKAELT
        S EIYEES LECYCGV AKLRMS TEK PFRL YNCPKEISQQCGFFHWADE EP +DRH NELDLIRNVCI LTER +EI EEHEDEK EWEREKAELT
Subjt:  SLEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADEPEPFDDRHTNELDLIRNVCIHLTERFEEIEEEHEDEKAEWEREKAELT

Query:  LKLSALQTQLDDIHNRIRMTNESFSMPP---LSIRDDEDEDDDALV
        LKLS LQTQLDDIHNR+R+TNESFSMPP   LSIRDD+D++   +V
Subjt:  LKLSALQTQLDDIHNRIRMTNESFSMPP---LSIRDDEDEDDDALV

KAF2294607.1 hypothetical protein GH714_013386 [Hevea brasiliensis]1.3e-3854.42Show/hide
Query:  LEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADEPEPFDDRHTNELDLIRNVCIHLTERFEEIEEEHEDEKAEWEREKAELTL
        L  +E+S + C CG+PAKLR+SQT +NPFRL YNCP+  + QCGFF W DEP P  DRHT+E++LIRN C  L  R +EIE+ HE++++ WEREK+EL L
Subjt:  LEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADEPEPFDDRHTNELDLIRNVCIHLTERFEEIEEEHEDEKAEWEREKAELTL

Query:  KLSALQTQLDDIHNRIRMTNESFSMPPL-SIRDDEDEDDDALVIYNL
        KLS +QT+LD+I  R+R  NES  MPPL ++   +DE DD + I+ +
Subjt:  KLSALQTQLDDIHNRIRMTNESFSMPPL-SIRDDEDEDDDALVIYNL

XP_004136954.1 uncharacterized protein LOC101219463 [Cucumis sativus]4.1e-6182Show/hide
Query:  SLEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADEPEPFDDRHTNELDLIRNVCIHLTERFEEIEEEHEDEKAEWEREKAELT
        S EIYEES LECYCGV AKLRMS TEK PFRL YNCPKEISQQCGFFHWADE EP +DRH NELDLIRNVCI LTER +EI EEHEDEK EWEREKAELT
Subjt:  SLEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADEPEPFDDRHTNELDLIRNVCIHLTERFEEIEEEHEDEKAEWEREKAELT

Query:  LKLSALQTQLDDIHNRIRMTNESFSMPP---LSIRDDEDEDDDALVIYNL
        LKLS LQTQLDDIHNR+R+TNESFSMPP   LSIRD  D+DD+ LVIY L
Subjt:  LKLSALQTQLDDIHNRIRMTNESFSMPP---LSIRDDEDEDDDALVIYNL

XP_008455003.1 PREDICTED: uncharacterized protein LOC103495284 [Cucumis melo]1.1e-6182Show/hide
Query:  SLEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADEPEPFDDRHTNELDLIRNVCIHLTERFEEIEEEHEDEKAEWEREKAELT
        S EIYEES LECYCG  AKLRMS TEKNPFRL YNCPKE+SQQCGFFHWADEPEP DDRH NELDLIRNVCI LTER +EI EEHEDEK EWEREKAELT
Subjt:  SLEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADEPEPFDDRHTNELDLIRNVCIHLTERFEEIEEEHEDEKAEWEREKAELT

Query:  LKLSALQTQLDDIHNRIRMTNESFSMPP---LSIRDDEDEDDDALVIYNL
        LKLS LQTQLDDI+NRIR+TNESFSMPP   LSIRDD D+++D LV+Y L
Subjt:  LKLSALQTQLDDIHNRIRMTNESFSMPP---LSIRDDEDEDDDALVIYNL

XP_022148840.1 uncharacterized protein LOC111017399 [Momordica charantia]4.3e-5877.7Show/hide
Query:  EIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADEPEPFDDRHTNELDLIRNVCIHLTERFEEIEEEHEDEKAEWEREKAELTLK
        EI+EES LECYCG+PAKLR SQT KNPFRL YNCPKEISQQCGFFHWADEPEP DDRH  EL+LIRNVC+HL +R +EIEEEH++EKAEWER+K ELTL+
Subjt:  EIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADEPEPFDDRHTNELDLIRNVCIHLTERFEEIEEEHEDEKAEWEREKAELTLK

Query:  LSALQTQLDDIHNRIRMTNESFSMPP---LSIRDDEDEDDDALVIYNL
        L  LQ+QLDDI +RIRM NESFSMPP   LSIRD  DE DDALVIY L
Subjt:  LSALQTQLDDIHNRIRMTNESFSMPP---LSIRDDEDEDDDALVIYNL

TrEMBL top hitse value%identityAlignment
A0A0A0K2H6 GRF-type domain-containing protein2.0e-6182Show/hide
Query:  SLEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADEPEPFDDRHTNELDLIRNVCIHLTERFEEIEEEHEDEKAEWEREKAELT
        S EIYEES LECYCGV AKLRMS TEK PFRL YNCPKEISQQCGFFHWADE EP +DRH NELDLIRNVCI LTER +EI EEHEDEK EWEREKAELT
Subjt:  SLEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADEPEPFDDRHTNELDLIRNVCIHLTERFEEIEEEHEDEKAEWEREKAELT

Query:  LKLSALQTQLDDIHNRIRMTNESFSMPP---LSIRDDEDEDDDALVIYNL
        LKLS LQTQLDDIHNR+R+TNESFSMPP   LSIRD  D+DD+ LVIY L
Subjt:  LKLSALQTQLDDIHNRIRMTNESFSMPP---LSIRDDEDEDDDALVIYNL

A0A1S4E0B8 uncharacterized protein LOC1034952845.3e-6282Show/hide
Query:  SLEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADEPEPFDDRHTNELDLIRNVCIHLTERFEEIEEEHEDEKAEWEREKAELT
        S EIYEES LECYCG  AKLRMS TEKNPFRL YNCPKE+SQQCGFFHWADEPEP DDRH NELDLIRNVCI LTER +EI EEHEDEK EWEREKAELT
Subjt:  SLEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADEPEPFDDRHTNELDLIRNVCIHLTERFEEIEEEHEDEKAEWEREKAELT

Query:  LKLSALQTQLDDIHNRIRMTNESFSMPP---LSIRDDEDEDDDALVIYNL
        LKLS LQTQLDDI+NRIR+TNESFSMPP   LSIRDD D+++D LV+Y L
Subjt:  LKLSALQTQLDDIHNRIRMTNESFSMPP---LSIRDDEDEDDDALVIYNL

A0A5A7SJM5 GRF-type domain-containing protein5.3e-6282Show/hide
Query:  SLEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADEPEPFDDRHTNELDLIRNVCIHLTERFEEIEEEHEDEKAEWEREKAELT
        S EIYEES LECYCG  AKLRMS TEKNPFRL YNCPKE+SQQCGFFHWADEPEP DDRH NELDLIRNVCI LTER +EI EEHEDEK EWEREKAELT
Subjt:  SLEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADEPEPFDDRHTNELDLIRNVCIHLTERFEEIEEEHEDEKAEWEREKAELT

Query:  LKLSALQTQLDDIHNRIRMTNESFSMPP---LSIRDDEDEDDDALVIYNL
        LKLS LQTQLDDI+NRIR+TNESFSMPP   LSIRDD D+++D LV+Y L
Subjt:  LKLSALQTQLDDIHNRIRMTNESFSMPP---LSIRDDEDEDDDALVIYNL

A0A6A6L2I8 GRF-type domain-containing protein6.3e-3954.42Show/hide
Query:  LEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADEPEPFDDRHTNELDLIRNVCIHLTERFEEIEEEHEDEKAEWEREKAELTL
        L  +E+S + C CG+PAKLR+SQT +NPFRL YNCP+  + QCGFF W DEP P  DRHT+E++LIRN C  L  R +EIE+ HE++++ WEREK+EL L
Subjt:  LEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADEPEPFDDRHTNELDLIRNVCIHLTERFEEIEEEHEDEKAEWEREKAELTL

Query:  KLSALQTQLDDIHNRIRMTNESFSMPPL-SIRDDEDEDDDALVIYNL
        KLS +QT+LD+I  R+R  NES  MPPL ++   +DE DD + I+ +
Subjt:  KLSALQTQLDDIHNRIRMTNESFSMPPL-SIRDDEDEDDDALVIYNL

A0A6J1D427 uncharacterized protein LOC1110173992.1e-5877.7Show/hide
Query:  EIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADEPEPFDDRHTNELDLIRNVCIHLTERFEEIEEEHEDEKAEWEREKAELTLK
        EI+EES LECYCG+PAKLR SQT KNPFRL YNCPKEISQQCGFFHWADEPEP DDRH  EL+LIRNVC+HL +R +EIEEEH++EKAEWER+K ELTL+
Subjt:  EIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADEPEPFDDRHTNELDLIRNVCIHLTERFEEIEEEHEDEKAEWEREKAELTLK

Query:  LSALQTQLDDIHNRIRMTNESFSMPP---LSIRDDEDEDDDALVIYNL
        L  LQ+QLDDI +RIRM NESFSMPP   LSIRD  DE DDALVIY L
Subjt:  LSALQTQLDDIHNRIRMTNESFSMPP---LSIRDDEDEDDDALVIYNL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTTGGAAATTTATGAGGAATCTAATCTTGAATGTTACTGTGGAGTGCCTGCCAAACTAAGAATGTCTCAGACAGAAAAAAATCCATTCAGGCTATTGTACAACTG
TCCAAAGGAGATATCTCAACAATGTGGTTTCTTTCATTGGGCTGATGAACCTGAACCATTTGATGATAGACACACTAACGAACTAGACTTGATCCGCAACGTGTGTATTC
ATCTAACAGAAAGATTTGAGGAAATCGAAGAGGAGCACGAGGATGAGAAAGCAGAGTGGGAAAGGGAAAAGGCTGAGCTAACATTAAAACTATCAGCTCTGCAGACTCAG
CTTGATGATATTCATAATAGAATAAGGATGACGAATGAATCCTTTTCAATGCCTCCACTTTCCATTAGGGACGACGAGGATGAGGATGATGATGCATTAGTTATATATAA
TTTGTAA
mRNA sequenceShow/hide mRNA sequence
TAATTCAGTATGTTTGTTTCTATTTGGTCTTGCAATGAAATGATGTCATTGTCAAAATAGAAACGAGCATACTGAGAAACTAAAGTAACTTGAGGGATAAGATTAGTGTC
ATAGTCAAGAAGAAAAGAGGAATAAAAACGCTAAAAAACAAAGAAGATTCCGATCACCTTAGGAAGTGCTTTTGGGTTGGCCCCCACACGATAAGCTTCAAACTCCTCGA
TCTCTTCATTTACGGACACTCGTCGTTCGTTGTTTCAATGCGACGGCGATCTTCCTTTGCTGCTTCAATCGGTTGCTCCAATTTACCAACCACGCTCTTTTAGAATACTT
CAAGGTCAAGGGACCTTGTGAAAAATTGGTGAGAGTTGATACTGCATAGTGCAACTTAGTTGAATGGCTGAGATCGTTGACTTTATCAAAAGAGTGCAATCAAGCTCGAA
CTTGGGACTCCTTGATTGCACTCGTTGACTAGACAACACTCTCGAGTGGAATACACGTCGGTTTTGGAGATCACAGCGGATCTGAATTCCTCTACCCTGCAATACGCGTT
GGTTTTGGAAAATTCTTGGAATAGACTAACAGATGTTCTGTCCATTTGACAAGGGGAGAGCCTAGATCCGTACTTGAACAATGTCTTTGGAAATTTATGAGGAATCTAAT
CTTGAATGTTACTGTGGAGTGCCTGCCAAACTAAGAATGTCTCAGACAGAAAAAAATCCATTCAGGCTATTGTACAACTGTCCAAAGGAGATATCTCAACAATGTGGTTT
CTTTCATTGGGCTGATGAACCTGAACCATTTGATGATAGACACACTAACGAACTAGACTTGATCCGCAACGTGTGTATTCATCTAACAGAAAGATTTGAGGAAATCGAAG
AGGAGCACGAGGATGAGAAAGCAGAGTGGGAAAGGGAAAAGGCTGAGCTAACATTAAAACTATCAGCTCTGCAGACTCAGCTTGATGATATTCATAATAGAATAAGGATG
ACGAATGAATCCTTTTCAATGCCTCCACTTTCCATTAGGGACGACGAGGATGAGGATGATGATGCATTAGTTATATATAATTTGTAAATAGATTATTGTAAATTATATCA
AGTGAAATGAGAGATGATGTAAAAAATATTTAAGCTATCTATTTTCAGTACGTGTTTAAGCTTTTATTTAAAAGTTATGGTTGTTCCATTAAT
Protein sequenceShow/hide protein sequence
MSLEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADEPEPFDDRHTNELDLIRNVCIHLTERFEEIEEEHEDEKAEWEREKAELTLKLSALQTQ
LDDIHNRIRMTNESFSMPPLSIRDDEDEDDDALVIYNL