; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC02G033110 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC02G033110
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionTubulin alpha-1B chain
Genome locationCiama_Chr02:8617594..8619495
RNA-Seq ExpressionCaUC02G033110
SyntenyCaUC02G033110
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAD2221797.1 hypothetical protein, conserved [Angomonas deanei]1.3e-2950.74Show/hide
Query:  MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDCALGFDGCNSGIDVLRNNVSSIHQTASHVLPMAGIALGHHGRWLECA
        +V A EHL     VG+H H  LHLG+VTAR+H   LVV+  LE  G P+ ELD AL  DG + G+DVL ++++++H+ A HVL +A +ALG H   LE  
Subjt:  MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDCALGFDGCNSGIDVLRNNVSSIHQTASHVLPMAGIALGHHGRWLECA

Query:  VGDLRYRELFVVGLLCRDHRGIGGKHEVDSWISVEL
        VGDL   ELFVVGLL  D  G+GG+HEVD+ +  E+
Subjt:  VGDLRYRELFVVGLLCRDHRGIGGKHEVDSWISVEL

EPY32002.1 hypothetical protein STCU_03026 [Strigomonas culicis]1.2e-2750.77Show/hide
Query:  MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDCALGFDGCNSGIDVLRNNVSSIHQTASHVLPMAGIALGHHGRWLECA
        +V A EHL   GRVG+H H  LHLG+V A +    LVV+A LE  G P+ ELD ALG DG + G+DVL ++++++H+ A HVL +AG+ALG H   LE  
Subjt:  MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDCALGFDGCNSGIDVLRNNVSSIHQTASHVLPMAGIALGHHGRWLECA

Query:  VGDLRYRELFVVGLLCRDHRGIGGKHEVDS
        VGDLR+ +L VV LL  D   + G+HEVD+
Subjt:  VGDLRYRELFVVGLLCRDHRGIGGKHEVDS

EPY42742.1 hypothetical protein AGDE_01181 [Angomonas deanei]1.3e-2950.74Show/hide
Query:  MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDCALGFDGCNSGIDVLRNNVSSIHQTASHVLPMAGIALGHHGRWLECA
        +V A EHL     VG+H H  LHLG+VTAR+H   LVV+  LE  G P+ ELD AL  DG + G+DVL ++++++H+ A HVL +A +ALG H   LE  
Subjt:  MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDCALGFDGCNSGIDVLRNNVSSIHQTASHVLPMAGIALGHHGRWLECA

Query:  VGDLRYRELFVVGLLCRDHRGIGGKHEVDSWISVEL
        VGDL   ELFVVGLL  D  G+GG+HEVD+ +  E+
Subjt:  VGDLRYRELFVVGLLCRDHRGIGGKHEVDSWISVEL

KAF3846725.1 hypothetical protein F7725_003803, partial [Dissostichus mawsoni]1.2e-2747.69Show/hide
Query:  MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDCALGFDGCNSGIDVLRNNVSSIHQTASHVLPMAGIALGHHGRWLECA
        +V A   L   G V  H H PLHLG+V++RNH   LVV+A LE SG P+H+LD ALGFDG +  +D+  +++ ++ + A HVL + G+A      WLE  
Subjt:  MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDCALGFDGCNSGIDVLRNNVSSIHQTASHVLPMAGIALGHHGRWLECA

Query:  VGDLRYRELFVVGLLCRDHRGIGGKHEVDS
        VGD+ +R+L VVGLLC D+ G+GG+ EVD+
Subjt:  VGDLRYRELFVVGLLCRDHRGIGGKHEVDS

OQS04464.1 hypothetical protein THRCLA_03304 [Thraustotheca clavata]2.4e-3148.48Show/hide
Query:  MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDCALGFDGCNSGIDVLRNNVSSIHQTASHVLPMAGIALGHHGRWLECA
        +V  REH   +  VGDH    L   K+TA NH WR VV+ TLETS AP+H+L+  LG DG NS ID+LR++++++HQT+SHV  MA I L HH + +E A
Subjt:  MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDCALGFDGCNSGIDVLRNNVSSIHQTASHVLPMAGIALGHHGRWLECA

Query:  VGDLRYRELFVVGLLCRDHRGIGGKHEVDSWI
        + D  +RELF+V L   +HR +  +HE+D+W+
Subjt:  VGDLRYRELFVVGLLCRDHRGIGGKHEVDSWI

TrEMBL top hitse value%identityAlignment
A0A1W0A2F7 Uncharacterized protein1.2e-3148.48Show/hide
Query:  MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDCALGFDGCNSGIDVLRNNVSSIHQTASHVLPMAGIALGHHGRWLECA
        +V  REH   +  VGDH    L   K+TA NH WR VV+ TLETS AP+H+L+  LG DG NS ID+LR++++++HQT+SHV  MA I L HH + +E A
Subjt:  MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDCALGFDGCNSGIDVLRNNVSSIHQTASHVLPMAGIALGHHGRWLECA

Query:  VGDLRYRELFVVGLLCRDHRGIGGKHEVDSWI
        + D  +RELF+V L   +HR +  +HE+D+W+
Subjt:  VGDLRYRELFVVGLLCRDHRGIGGKHEVDSWI

A0A4W2I559 Tubulin alpha-1B chain1.9e-2949.24Show/hide
Query:  MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDCALGFDGCNSGIDVLRNNVSSIHQTASHVLPMAGIALGHHGRWLECA
        +V AR  L  +  V  H H  L+ G+V+AR H  RLVVNA LE SGAP+H+LD  LG DG N  ID+  N+++++ Q A HV PMA +   H   WL+ +
Subjt:  MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDCALGFDGCNSGIDVLRNNVSSIHQTASHVLPMAGIALGHHGRWLECA

Query:  VGDLRYRELFVVGLLCRDHRGIGGKHEVDSWI
        +GDL YR+LF+VG L RD RG+ G+ EVD+ I
Subjt:  VGDLRYRELFVVGLLCRDHRGIGGKHEVDSWI

A0A4W2I6D4 Tubulin alpha-1B chain7.1e-2948.48Show/hide
Query:  MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDCALGFDGCNSGIDVLRNNVSSIHQTASHVLPMAGIALGHHGRWLECA
        +V AR  L     V  H H  L+ G+V+ R H  RLV+NA LE SGAP+H+LD  LG DG N  ID+  N+V+++ Q A HV PMA +   H   WL+ +
Subjt:  MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDCALGFDGCNSGIDVLRNNVSSIHQTASHVLPMAGIALGHHGRWLECA

Query:  VGDLRYRELFVVGLLCRDHRGIGGKHEVDSWI
        +GDL YR+LF+VG L RD RG+ G+ EVD+ I
Subjt:  VGDLRYRELFVVGLLCRDHRGIGGKHEVDSWI

A0A7G2CRM3 Uncharacterized protein6.4e-3050.74Show/hide
Query:  MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDCALGFDGCNSGIDVLRNNVSSIHQTASHVLPMAGIALGHHGRWLECA
        +V A EHL     VG+H H  LHLG+VTAR+H   LVV+  LE  G P+ ELD AL  DG + G+DVL ++++++H+ A HVL +A +ALG H   LE  
Subjt:  MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDCALGFDGCNSGIDVLRNNVSSIHQTASHVLPMAGIALGHHGRWLECA

Query:  VGDLRYRELFVVGLLCRDHRGIGGKHEVDSWISVEL
        VGDL   ELFVVGLL  D  G+GG+HEVD+ +  E+
Subjt:  VGDLRYRELFVVGLLCRDHRGIGGKHEVDSWISVEL

K3X1R8 Uncharacterized protein8.4e-3049.24Show/hide
Query:  MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDCALGFDGCNSGIDVLRNNVSSIHQTASHVLPMAGIALGHHGRWLECA
        +V AREH     RV DH H  LH  K+TA  + WRLVV+  LET  AP+HELD ALG D  N  I +L ++++++H+T  HVL +A + LGHH  W + A
Subjt:  MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDCALGFDGCNSGIDVLRNNVSSIHQTASHVLPMAGIALGHHGRWLECA

Query:  VGDLRYRELFVVGLLCRDHRGIGGKHEVDSWI
        VGD   R+L VV LL RDH  +  +HEVD+W+
Subjt:  VGDLRYRELFVVGLLCRDHRGIGGKHEVDSWI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCTATGCGAGAGAACACCTCCGCTACGCTGGTCGAGTTGGAGATCATACACACTGCCCTCTGCACCTTGGCAAGGTCACCGCCCGGAACCACCGTTGGCGGCTGGT
AGTTAATGCCACACTTGAAACCAGTGGGGCACCAATCCACGAACTGGATTGTGCGCTTGGTTTTGATGGTTGCAACAGCGGCATTGACGTCCTTCGGAACAACGTCTCCT
CGATACATCAGACAGCAAGCCATGTACTTCCCATGGCGGGGATCGCACTTGGCCATCATGGAAGATGGCTCGAATGCGCTGTTGGTGATCTCCGCTACAGAGAGCTGTTC
GTGGTAGGCCTTCTCTGCAGAGATCACAGGGGCATAGGAGGAAAGCATGAAGTGGATTCTTGGATCTCAGTAGAATTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCTATGCGAGAGAACACCTCCGCTACGCTGGTCGAGTTGGAGATCATACACACTGCCCTCTGCACCTTGGCAAGGTCACCGCCCGGAACCACCGTTGGCGGCTGGT
AGTTAATGCCACACTTGAAACCAGTGGGGCACCAATCCACGAACTGGATTGTGCGCTTGGTTTTGATGGTTGCAACAGCGGCATTGACGTCCTTCGGAACAACGTCTCCT
CGATACATCAGACAGCAAGCCATGTACTTCCCATGGCGGGGATCGCACTTGGCCATCATGGAAGATGGCTCGAATGCGCTGTTGGTGATCTCCGCTACAGAGAGCTGTTC
GTGGTAGGCCTTCTCTGCAGAGATCACAGGGGCATAGGAGGAAAGCATGAAGTGGATTCTTGGATCTCAGTAGAATTATGA
Protein sequenceShow/hide protein sequence
MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDCALGFDGCNSGIDVLRNNVSSIHQTASHVLPMAGIALGHHGRWLECAVGDLRYRELF
VVGLLCRDHRGIGGKHEVDSWISVEL