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CaUC02G033130 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC02G033130
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionTy1-copia retrotransposon protein
Genome locationCiama_Chr02:8695005..8695474
RNA-Seq ExpressionCaUC02G033130
SyntenyCaUC02G033130
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043346.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]4.2e-2649.06Show/hide
Query:  MSIK-SDKVLPDPSKLEPLDRSNYHC-------------VNYILTADKFNKGKITNKGKFTLVIDPDRSKVTDPDSS--KVTDSSESGESKFEPAVDPDK
        MSIK S+K+LPD SKLEPLD +NY               V+Y+LT D       T             S  +DP+SS   +T  + + + K +  +DP+K
Subjt:  MSIK-SDKVLPDPSKLEPLDRSNYHC-------------VNYILTADKFNKGKITNKGKFTLVIDPDRSKVTDPDSS--KVTDSSESGESKFEPAVDPDK

Query:  FEKDNQTICNQLLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF
        + KDN+T+   LLNHM+D +FDLFVVQK AK IW+TLKSRYG DDAG KKYVVGKWLQF
Subjt:  FEKDNQTICNQLLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF

TYK02676.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]4.2e-2649.06Show/hide
Query:  MSIK-SDKVLPDPSKLEPLDRSNYHC-------------VNYILTADKFNKGKITNKGKFTLVIDPDRSKVTDPDSS--KVTDSSESGESKFEPAVDPDK
        MSIK S+K+LPD SKLEPLD +NY               V+Y+LT D       T             S  +DP+SS   +T  + + + K +  +DP+K
Subjt:  MSIK-SDKVLPDPSKLEPLDRSNYHC-------------VNYILTADKFNKGKITNKGKFTLVIDPDRSKVTDPDSS--KVTDSSESGESKFEPAVDPDK

Query:  FEKDNQTICNQLLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF
        + KDN+T+   LLNHM+D +FDLFVVQK AK IW+TLKSRYG DDAG KKYVVGKWLQF
Subjt:  FEKDNQTICNQLLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF

TYK11299.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]3.2e-2648.43Show/hide
Query:  MSIK-SDKVLPDPSKLEPLDRSNYHC-------------VNYILTADKFNKGKITNKGKFTLVIDPDRSKVTDPDSS--KVTDSSESGESKFEPAVDPDK
        MSIK S+K+LPD SKLEPLD +NY               V+Y+LT D       T             S  +DP+SS   +T  + + + K +  +DP+K
Subjt:  MSIK-SDKVLPDPSKLEPLDRSNYHC-------------VNYILTADKFNKGKITNKGKFTLVIDPDRSKVTDPDSS--KVTDSSESGESKFEPAVDPDK

Query:  FEKDNQTICNQLLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF
        + KDN+T+   LLNHM+D +FDLFVVQK AK IW+TL+SRYG DDAG KKYVVGKWLQF
Subjt:  FEKDNQTICNQLLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF

XP_008445782.1 PREDICTED: uncharacterized protein LOC103488707 [Cucumis melo]3.2e-2648.43Show/hide
Query:  MSIK-SDKVLPDPSKLEPLDRSNYHC-------------VNYILTADKFNKGKITNKGKFTLVIDPDRSKVTDPDSS--KVTDSSESGESKFEPAVDPDK
        MSIK S+K+LPD SKLEPLD +NY               V+Y+LT D       T             S  +DP+SS   +T  + + + K +  +DP+K
Subjt:  MSIK-SDKVLPDPSKLEPLDRSNYHC-------------VNYILTADKFNKGKITNKGKFTLVIDPDRSKVTDPDSS--KVTDSSESGESKFEPAVDPDK

Query:  FEKDNQTICNQLLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF
        + KDN+T+   LLNHM+D +FDLFVVQK AK IW+TL+SRYG DDAG KKYVVGKWLQF
Subjt:  FEKDNQTICNQLLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF

XP_038889290.1 uncharacterized protein LOC120079196 [Benincasa hispida]4.5e-2852.03Show/hide
Query:  LPDPSKLEPLDRSNYHC-------------VNYILTADKFNKGKITNKGKFTLVIDPDRSKVTDPDSSKVTDSSESGESKFEPAVDPDKFEKDNQTICNQ
        L D SKLEPL+ SNY               V YIL  ++F+ GK+ + GK  + IDP+ SKVTDP         E  +S  +PA D  KFEKDN+T+C  
Subjt:  LPDPSKLEPLDRSNYHC-------------VNYILTADKFNKGKITNKGKFTLVIDPDRSKVTDPDSSKVTDSSESGESKFEPAVDPDKFEKDNQTICNQ

Query:  LLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF
        LLNH+T SLFDLFVVQ   KVI +TL+SRYG DDA  KKYV+ KWLQF
Subjt:  LLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF

TrEMBL top hitse value%identityAlignment
A0A1S3BE75 uncharacterized protein LOC1034887071.6e-2648.43Show/hide
Query:  MSIK-SDKVLPDPSKLEPLDRSNYHC-------------VNYILTADKFNKGKITNKGKFTLVIDPDRSKVTDPDSS--KVTDSSESGESKFEPAVDPDK
        MSIK S+K+LPD SKLEPLD +NY               V+Y+LT D       T             S  +DP+SS   +T  + + + K +  +DP+K
Subjt:  MSIK-SDKVLPDPSKLEPLDRSNYHC-------------VNYILTADKFNKGKITNKGKFTLVIDPDRSKVTDPDSS--KVTDSSESGESKFEPAVDPDK

Query:  FEKDNQTICNQLLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF
        + KDN+T+   LLNHM+D +FDLFVVQK AK IW+TL+SRYG DDAG KKYVVGKWLQF
Subjt:  FEKDNQTICNQLLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF

A0A5A7TMS2 Ty1-copia retrotransposon protein2.0e-2649.06Show/hide
Query:  MSIK-SDKVLPDPSKLEPLDRSNYHC-------------VNYILTADKFNKGKITNKGKFTLVIDPDRSKVTDPDSS--KVTDSSESGESKFEPAVDPDK
        MSIK S+K+LPD SKLEPLD +NY               V+Y+LT D       T             S  +DP+SS   +T  + + + K +  +DP+K
Subjt:  MSIK-SDKVLPDPSKLEPLDRSNYHC-------------VNYILTADKFNKGKITNKGKFTLVIDPDRSKVTDPDSS--KVTDSSESGESKFEPAVDPDK

Query:  FEKDNQTICNQLLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF
        + KDN+T+   LLNHM+D +FDLFVVQK AK IW+TLKSRYG DDAG KKYVVGKWLQF
Subjt:  FEKDNQTICNQLLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF

A0A5D3BWR7 Ty1-copia retrotransposon protein2.0e-2649.06Show/hide
Query:  MSIK-SDKVLPDPSKLEPLDRSNYHC-------------VNYILTADKFNKGKITNKGKFTLVIDPDRSKVTDPDSS--KVTDSSESGESKFEPAVDPDK
        MSIK S+K+LPD SKLEPLD +NY               V+Y+LT D       T             S  +DP+SS   +T  + + + K +  +DP+K
Subjt:  MSIK-SDKVLPDPSKLEPLDRSNYHC-------------VNYILTADKFNKGKITNKGKFTLVIDPDRSKVTDPDSS--KVTDSSESGESKFEPAVDPDK

Query:  FEKDNQTICNQLLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF
        + KDN+T+   LLNHM+D +FDLFVVQK AK IW+TLKSRYG DDAG KKYVVGKWLQF
Subjt:  FEKDNQTICNQLLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF

A0A5D3C5T2 Ty1-copia retrotransposon protein4.5e-2648.43Show/hide
Query:  MSIK-SDKVLPDPSKLEPLDRSNYHC-------------VNYILTADKFNKGKITNKGKFTLVIDPDRSKVTDPDSS--KVTDSSESGESKFEPAVDPDK
        MSIK S+K+LPD SKLEPLD +NY               V+Y+LT D       T             S  +DP+SS   +T  + + + K +  +DP+K
Subjt:  MSIK-SDKVLPDPSKLEPLDRSNYHC-------------VNYILTADKFNKGKITNKGKFTLVIDPDRSKVTDPDSS--KVTDSSESGESKFEPAVDPDK

Query:  FEKDNQTICNQLLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF
        + KDN+T+   LLNHM+D +FDLFVVQK AK IW+TL+SRYG DDAG KKYVVGKWLQF
Subjt:  FEKDNQTICNQLLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF

A0A5D3CM58 Ty1-copia retrotransposon protein1.6e-2648.43Show/hide
Query:  MSIK-SDKVLPDPSKLEPLDRSNYHC-------------VNYILTADKFNKGKITNKGKFTLVIDPDRSKVTDPDSS--KVTDSSESGESKFEPAVDPDK
        MSIK S+K+LPD SKLEPLD +NY               V+Y+LT D       T             S  +DP+SS   +T  + + + K +  +DP+K
Subjt:  MSIK-SDKVLPDPSKLEPLDRSNYHC-------------VNYILTADKFNKGKITNKGKFTLVIDPDRSKVTDPDSS--KVTDSSESGESKFEPAVDPDK

Query:  FEKDNQTICNQLLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF
        + KDN+T+   LLNHM+D +FDLFVVQK AK IW+TL+SRYG DDAG KKYVVGKWLQF
Subjt:  FEKDNQTICNQLLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATCAAGAGTGATAAGGTTCTTCCAGATCCATCAAAATTGGAGCCTCTGGATAGATCCAATTACCATTGTGTCAATTACATTCTCACTGCCGACAAATTT
AATAAAGGTAAGATTACTAACAAAGGTAAGTTTACTTTGGTGATTGATCCAGACAGGTCCAAAGTCACGGATCCGGATAGCTCCAAAGTTACAGATTCGTCAGAA
TCTGGTGAGTCCAAATTCGAACCTGCTGTAGATCCAGACAAATTTGAGAAAGATAACCAGACAATATGTAACCAATTACTCAATCATATGACAGATTCGTTATTC
GATTTATTCGTGGTCCAGAAGTTAGCAAAGGTGATATGGAACACTCTGAAATCTAGATATGGAAAAGATGATGCAGGCAATAAGAAGTATGTTGTTGGAAAATGG
TTGCAATTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGATCAAGAGTGATAAGGTTCTTCCAGATCCATCAAAATTGGAGCCTCTGGATAGATCCAATTACCATTGTGTCAATTACATTCTCACTGCCGACAAATTT
AATAAAGGTAAGATTACTAACAAAGGTAAGTTTACTTTGGTGATTGATCCAGACAGGTCCAAAGTCACGGATCCGGATAGCTCCAAAGTTACAGATTCGTCAGAA
TCTGGTGAGTCCAAATTCGAACCTGCTGTAGATCCAGACAAATTTGAGAAAGATAACCAGACAATATGTAACCAATTACTCAATCATATGACAGATTCGTTATTC
GATTTATTCGTGGTCCAGAAGTTAGCAAAGGTGATATGGAACACTCTGAAATCTAGATATGGAAAAGATGATGCAGGCAATAAGAAGTATGTTGTTGGAAAATGG
TTGCAATTTTAG
Protein sequenceShow/hide protein sequence
MSIKSDKVLPDPSKLEPLDRSNYHCVNYILTADKFNKGKITNKGKFTLVIDPDRSKVTDPDSSKVTDSSESGESKFEPAVDPDKFEKDNQTICNQLLNHMTDSLF
DLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF