; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC02G033320 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC02G033320
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionPMD domain-containing protein
Genome locationCiama_Chr02:8980916..8981886
RNA-Seq ExpressionCaUC02G033320
SyntenyCaUC02G033320
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033221.1 uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa]2.3e-11368.9Show/hide
Query:  MVDTHAPGVFAHTIPSEDSWEGVSQWSEQLQQESRFAWPRRSEISLPQFPRLEFVENNLEDLKELWENLALEHRTEFARAYGNIADLMYANISTQALQAL
        MVDTHA  V A  IP+EDSWE VSQWSE  Q ES  +WP++ E+ LP+  +L F+ NNLE+LK LWE+L  E R +F +AYG+I DL+Y  I+T  LQAL
Subjt:  MVDTHAPGVFAHTIPSEDSWEGVSQWSEQLQQESRFAWPRRSEISLPQFPRLEFVENNLEDLKELWENLALEHRTEFARAYGNIADLMYANISTQALQAL

Query:  VHFWDPMLKCFTFSMFDLTPTIEEYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLA
         HFWDP+LKCFTF+ FDLTPTIEEY+ALI +    G K+Y+Y R+ TLQRSLSKF+G+IHAS++KKQMKTK GR+CIPI+YLI+L R  L G+KGLSL+A
Subjt:  VHFWDPMLKCFTFSMFDLTPTIEEYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLA

Query:  LCIYGTVIFPRIKGYAEEEVIKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFTCAPMLFIWISSHLKYPSEFGPSNIK
        LCIYGTVIFPRIKGY EEEV+K+FVGIERGVNP+IPIMAETFRSL++CR+QGKGKFF+CAPMLFIWISSHL+YP+ FG   IK
Subjt:  LCIYGTVIFPRIKGYAEEEVIKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFTCAPMLFIWISSHLKYPSEFGPSNIK

KAA0046606.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa]2.3e-10868.75Show/hide
Query:  MVDTHAPGVFAHTIPSEDSWEGVSQWSEQLQQESRFAWPRRSEISLPQFPRLEFVENNLEDLKELWENLALEHRTEFARAYGNIADLMYANISTQALQAL
        MVDTHA  V A  IP+EDSWE VSQWSE  Q +S  +WP++ E+ LP+  +L F+ NNLE+LK LWE+L  E R EF +AYG+I DL+Y  I+T  LQAL
Subjt:  MVDTHAPGVFAHTIPSEDSWEGVSQWSEQLQQESRFAWPRRSEISLPQFPRLEFVENNLEDLKELWENLALEHRTEFARAYGNIADLMYANISTQALQAL

Query:  VHFWDPMLKCFTFSMFDLTPTIEEYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLA
         HFWDP+LKCFTF+ FDLTPTIEEY+ALI +    G  +Y+YDR+ TLQRSLSKF+G+IHAS++KKQMKTK GR+CIPI+YLI+L R  L  + GLSL+A
Subjt:  VHFWDPMLKCFTFSMFDLTPTIEEYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLA

Query:  LCIYGTVIFPRIKGYAEEEVIKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFTCAPMLFIWISSHLK
        LCIYGTVIFPRIKGY EEEV+K+FVGIERGVNP+IPIMAETFRSL++CR+QGKGKFF+CAPMLFIWISSHL+
Subjt:  LCIYGTVIFPRIKGYAEEEVIKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFTCAPMLFIWISSHLK

KAA0060423.1 uncharacterized protein E6C27_scaffold22G002420 [Cucumis melo var. makuwa]1.1e-6748.46Show/hide
Query:  DSWEGVSQWSEQLQQESRFAWPRRSEISLPQFPRLEFVENNLEDLKELWENLALEHRTEFARAYGNIADLMYANISTQALQALVHFWDPMLKCFTFSMFD
        D    V +W+E++QQ+        S+IS+    +L F +N+L +LK +WE L  + R  F++ YG+I +LMY  ++  AL+A+++FWDP   CFTF   D
Subjt:  DSWEGVSQWSEQLQQESRFAWPRRSEISLPQFPRLEFVENNLEDLKELWENLALEHRTEFARAYGNIADLMYANISTQALQALVHFWDPMLKCFTFSMFD

Query:  LTPTIEEYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLALCIYGTVIFPRIKGYAE
        L PTIEEY+A++ +       VY ++ ++T +R+LSKFL  +HA++I+K +K KGG   +P DYLI +T+ ++   KGL+LLALCIYG VIFP+ +GY +
Subjt:  LTPTIEEYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLALCIYGTVIFPRIKGYAE

Query:  EEVIKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFTCAPMLFIWISSHLKYPSEF
         +VIKLF  +ERGVNPIIPI+AETFRSL+YCR +G+GK   C P+L+IWI SH+K+P+EF
Subjt:  EEVIKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFTCAPMLFIWISSHLKYPSEF

KAA0065295.1 uncharacterized protein E6C27_scaffold1023G00080 [Cucumis melo var. makuwa]4.0e-11368.55Show/hide
Query:  MVDTHAPGVFAHTIPSEDSWEGVSQWSEQLQQESRFAWPRRSEISLPQFPRLEFVENNLEDLKELWENLALEHRTEFARAYGNIADLMYANISTQALQAL
        MVDTHA  V A  IP+EDSW+ VSQWSE  Q ES  +WP++ E+ LP+  +LEF+ NNLE+LK LWE+L  E R EF +AYG+I DL+Y  I+T  LQAL
Subjt:  MVDTHAPGVFAHTIPSEDSWEGVSQWSEQLQQESRFAWPRRSEISLPQFPRLEFVENNLEDLKELWENLALEHRTEFARAYGNIADLMYANISTQALQAL

Query:  VHFWDPMLKCFTFSMFDLTPTIEEYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLA
         HFWDP+LK FTF+ FDLTPTIEEY+ALI +    G K+Y+YDR+ TLQRSLSKF+G+IHAS++KK MKTK GR+CIPI+YLI+L R  L G+KGLSL+A
Subjt:  VHFWDPMLKCFTFSMFDLTPTIEEYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLA

Query:  LCIYGTVIFPRIKGYAEEEVIKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFTCAPMLFIWISSHLKYPSEFGPSNIK
        LCIYGTVIFPRIKGY EEEV+K+FVGIERGVNP+IPIMAETFRSL++C++QGKGKFF+CAPMLFIWISSHL+YP+ FG   IK
Subjt:  LCIYGTVIFPRIKGYAEEEVIKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFTCAPMLFIWISSHLKYPSEFGPSNIK

TYK16834.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa]3.9e-6872.19Show/hide
Query:  MFDLTPTIEEYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLALCIYGTVIFPRIKG
        MFDLTPTIEEY ALI +    G K+Y+YDR+ T++RSLSKF+G+IHAS++KKQ+K K GR+CIPI+YLI+L R  L  +KGLSL+ALCIYGT+IFPRIKG
Subjt:  MFDLTPTIEEYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLALCIYGTVIFPRIKG

Query:  YAEEEVIKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFTCAPMLFIWISSHLKYPSEFGPSNIK
        Y EEEV+K+FVGIERGVNP+IPIM ETFRSL++CR+QGKGKFF+CAPMLFIWISSHL+YP+ FG   IK
Subjt:  YAEEEVIKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFTCAPMLFIWISSHLKYPSEFGPSNIK

TrEMBL top hitse value%identityAlignment
A0A5A7SUT0 Reverse transcriptase1.1e-11368.9Show/hide
Query:  MVDTHAPGVFAHTIPSEDSWEGVSQWSEQLQQESRFAWPRRSEISLPQFPRLEFVENNLEDLKELWENLALEHRTEFARAYGNIADLMYANISTQALQAL
        MVDTHA  V A  IP+EDSWE VSQWSE  Q ES  +WP++ E+ LP+  +L F+ NNLE+LK LWE+L  E R +F +AYG+I DL+Y  I+T  LQAL
Subjt:  MVDTHAPGVFAHTIPSEDSWEGVSQWSEQLQQESRFAWPRRSEISLPQFPRLEFVENNLEDLKELWENLALEHRTEFARAYGNIADLMYANISTQALQAL

Query:  VHFWDPMLKCFTFSMFDLTPTIEEYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLA
         HFWDP+LKCFTF+ FDLTPTIEEY+ALI +    G K+Y+Y R+ TLQRSLSKF+G+IHAS++KKQMKTK GR+CIPI+YLI+L R  L G+KGLSL+A
Subjt:  VHFWDPMLKCFTFSMFDLTPTIEEYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLA

Query:  LCIYGTVIFPRIKGYAEEEVIKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFTCAPMLFIWISSHLKYPSEFGPSNIK
        LCIYGTVIFPRIKGY EEEV+K+FVGIERGVNP+IPIMAETFRSL++CR+QGKGKFF+CAPMLFIWISSHL+YP+ FG   IK
Subjt:  LCIYGTVIFPRIKGYAEEEVIKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFTCAPMLFIWISSHLKYPSEFGPSNIK

A0A5A7TXA1 Glial fibrillary acidic protein-like1.1e-10868.75Show/hide
Query:  MVDTHAPGVFAHTIPSEDSWEGVSQWSEQLQQESRFAWPRRSEISLPQFPRLEFVENNLEDLKELWENLALEHRTEFARAYGNIADLMYANISTQALQAL
        MVDTHA  V A  IP+EDSWE VSQWSE  Q +S  +WP++ E+ LP+  +L F+ NNLE+LK LWE+L  E R EF +AYG+I DL+Y  I+T  LQAL
Subjt:  MVDTHAPGVFAHTIPSEDSWEGVSQWSEQLQQESRFAWPRRSEISLPQFPRLEFVENNLEDLKELWENLALEHRTEFARAYGNIADLMYANISTQALQAL

Query:  VHFWDPMLKCFTFSMFDLTPTIEEYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLA
         HFWDP+LKCFTF+ FDLTPTIEEY+ALI +    G  +Y+YDR+ TLQRSLSKF+G+IHAS++KKQMKTK GR+CIPI+YLI+L R  L  + GLSL+A
Subjt:  VHFWDPMLKCFTFSMFDLTPTIEEYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLA

Query:  LCIYGTVIFPRIKGYAEEEVIKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFTCAPMLFIWISSHLK
        LCIYGTVIFPRIKGY EEEV+K+FVGIERGVNP+IPIMAETFRSL++CR+QGKGKFF+CAPMLFIWISSHL+
Subjt:  LCIYGTVIFPRIKGYAEEEVIKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFTCAPMLFIWISSHLK

A0A5A7UWQ6 Uncharacterized protein5.5e-6848.46Show/hide
Query:  DSWEGVSQWSEQLQQESRFAWPRRSEISLPQFPRLEFVENNLEDLKELWENLALEHRTEFARAYGNIADLMYANISTQALQALVHFWDPMLKCFTFSMFD
        D    V +W+E++QQ+        S+IS+    +L F +N+L +LK +WE L  + R  F++ YG+I +LMY  ++  AL+A+++FWDP   CFTF   D
Subjt:  DSWEGVSQWSEQLQQESRFAWPRRSEISLPQFPRLEFVENNLEDLKELWENLALEHRTEFARAYGNIADLMYANISTQALQALVHFWDPMLKCFTFSMFD

Query:  LTPTIEEYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLALCIYGTVIFPRIKGYAE
        L PTIEEY+A++ +       VY ++ ++T +R+LSKFL  +HA++I+K +K KGG   +P DYLI +T+ ++   KGL+LLALCIYG VIFP+ +GY +
Subjt:  LTPTIEEYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLALCIYGTVIFPRIKGYAE

Query:  EEVIKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFTCAPMLFIWISSHLKYPSEF
         +VIKLF  +ERGVNPIIPI+AETFRSL+YCR +G+GK   C P+L+IWI SH+K+P+EF
Subjt:  EEVIKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFTCAPMLFIWISSHLKYPSEF

A0A5A7VHI3 Uncharacterized protein1.9e-11368.55Show/hide
Query:  MVDTHAPGVFAHTIPSEDSWEGVSQWSEQLQQESRFAWPRRSEISLPQFPRLEFVENNLEDLKELWENLALEHRTEFARAYGNIADLMYANISTQALQAL
        MVDTHA  V A  IP+EDSW+ VSQWSE  Q ES  +WP++ E+ LP+  +LEF+ NNLE+LK LWE+L  E R EF +AYG+I DL+Y  I+T  LQAL
Subjt:  MVDTHAPGVFAHTIPSEDSWEGVSQWSEQLQQESRFAWPRRSEISLPQFPRLEFVENNLEDLKELWENLALEHRTEFARAYGNIADLMYANISTQALQAL

Query:  VHFWDPMLKCFTFSMFDLTPTIEEYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLA
         HFWDP+LK FTF+ FDLTPTIEEY+ALI +    G K+Y+YDR+ TLQRSLSKF+G+IHAS++KK MKTK GR+CIPI+YLI+L R  L G+KGLSL+A
Subjt:  VHFWDPMLKCFTFSMFDLTPTIEEYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLA

Query:  LCIYGTVIFPRIKGYAEEEVIKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFTCAPMLFIWISSHLKYPSEFGPSNIK
        LCIYGTVIFPRIKGY EEEV+K+FVGIERGVNP+IPIMAETFRSL++C++QGKGKFF+CAPMLFIWISSHL+YP+ FG   IK
Subjt:  LCIYGTVIFPRIKGYAEEEVIKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFTCAPMLFIWISSHLKYPSEFGPSNIK

A0A5D3D0S2 Glial fibrillary acidic protein-like1.9e-6872.19Show/hide
Query:  MFDLTPTIEEYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLALCIYGTVIFPRIKG
        MFDLTPTIEEY ALI +    G K+Y+YDR+ T++RSLSKF+G+IHAS++KKQ+K K GR+CIPI+YLI+L R  L  +KGLSL+ALCIYGT+IFPRIKG
Subjt:  MFDLTPTIEEYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLALCIYGTVIFPRIKG

Query:  YAEEEVIKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFTCAPMLFIWISSHLKYPSEFGPSNIK
        Y EEEV+K+FVGIERGVNP+IPIM ETFRSL++CR+QGKGKFF+CAPMLFIWISSHL+YP+ FG   IK
Subjt:  YAEEEVIKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFTCAPMLFIWISSHLKYPSEFGPSNIK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAGACACTCATGCGCCTGGGGTATTTGCCCATACCATCCCTAGCGAAGACTCGTGGGAAGGTGTGTCACAGTGGTCAGAGCAGCTTCAACAAGAGTCAAGATTTGC
TTGGCCTAGAAGATCTGAGATTTCACTTCCACAATTTCCTCGATTAGAGTTTGTCGAAAATAATCTGGAAGATCTGAAGGAATTGTGGGAGAATTTAGCCTTGGAGCATA
GAACTGAATTTGCAAGAGCATATGGGAACATCGCAGATCTGATGTATGCAAACATCAGCACACAAGCACTGCAAGCCTTGGTACACTTTTGGGACCCTATGTTGAAATGT
TTCACATTCAGTATGTTTGACCTAACTCCCACTATAGAGGAATATCGAGCTCTCATCGGCATACTACCTTGCATAGGAGGAAAGGTCTACGTCTATGATCGGAGGCGAAC
TCTACAAAGATCATTGTCCAAGTTCTTGGGTAATATTCATGCATCTGATATAAAAAAGCAGATGAAGACAAAAGGAGGGAGAAGTTGTATCCCTATTGATTATTTAATCA
GCCTTACGCGTGCATTTTTGCCTGGGAGGAAAGGTCTGTCTCTTTTGGCATTATGTATTTACGGTACGGTTATCTTTCCAAGAATTAAGGGGTATGCAGAAGAAGAAGTT
ATTAAACTTTTCGTTGGAATAGAGAGAGGTGTGAACCCCATTATCCCAATCATGGCGGAAACCTTTAGATCATTGAGCTATTGCCGAGTCCAAGGCAAGGGGAAGTTCTT
CACCTGCGCTCCAATGCTTTTTATATGGATTTCTAGCCATTTGAAGTATCCAAGCGAGTTTGGGCCATCTAACATCAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTAGACACTCATGCGCCTGGGGTATTTGCCCATACCATCCCTAGCGAAGACTCGTGGGAAGGTGTGTCACAGTGGTCAGAGCAGCTTCAACAAGAGTCAAGATTTGC
TTGGCCTAGAAGATCTGAGATTTCACTTCCACAATTTCCTCGATTAGAGTTTGTCGAAAATAATCTGGAAGATCTGAAGGAATTGTGGGAGAATTTAGCCTTGGAGCATA
GAACTGAATTTGCAAGAGCATATGGGAACATCGCAGATCTGATGTATGCAAACATCAGCACACAAGCACTGCAAGCCTTGGTACACTTTTGGGACCCTATGTTGAAATGT
TTCACATTCAGTATGTTTGACCTAACTCCCACTATAGAGGAATATCGAGCTCTCATCGGCATACTACCTTGCATAGGAGGAAAGGTCTACGTCTATGATCGGAGGCGAAC
TCTACAAAGATCATTGTCCAAGTTCTTGGGTAATATTCATGCATCTGATATAAAAAAGCAGATGAAGACAAAAGGAGGGAGAAGTTGTATCCCTATTGATTATTTAATCA
GCCTTACGCGTGCATTTTTGCCTGGGAGGAAAGGTCTGTCTCTTTTGGCATTATGTATTTACGGTACGGTTATCTTTCCAAGAATTAAGGGGTATGCAGAAGAAGAAGTT
ATTAAACTTTTCGTTGGAATAGAGAGAGGTGTGAACCCCATTATCCCAATCATGGCGGAAACCTTTAGATCATTGAGCTATTGCCGAGTCCAAGGCAAGGGGAAGTTCTT
CACCTGCGCTCCAATGCTTTTTATATGGATTTCTAGCCATTTGAAGTATCCAAGCGAGTTTGGGCCATCTAACATCAAATGA
Protein sequenceShow/hide protein sequence
MVDTHAPGVFAHTIPSEDSWEGVSQWSEQLQQESRFAWPRRSEISLPQFPRLEFVENNLEDLKELWENLALEHRTEFARAYGNIADLMYANISTQALQALVHFWDPMLKC
FTFSMFDLTPTIEEYRALIGILPCIGGKVYVYDRRRTLQRSLSKFLGNIHASDIKKQMKTKGGRSCIPIDYLISLTRAFLPGRKGLSLLALCIYGTVIFPRIKGYAEEEV
IKLFVGIERGVNPIIPIMAETFRSLSYCRVQGKGKFFTCAPMLFIWISSHLKYPSEFGPSNIK