; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC02G033370 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC02G033370
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionU11/U12 small nuclear ribonucleoprotein 65 kDa protein
Genome locationCiama_Chr02:9458089..9481711
RNA-Seq ExpressionCaUC02G033370
SyntenyCaUC02G033370
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004139973.1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Cucumis sativus]4.7e-14887.81Show/hide
Query:  MEDATTKDAISKDHRSKYHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLP
        ME A  KDAISKDH S+ HTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLP
Subjt:  MEDATTKDAISKDHRSKYHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLP

Query:  PSIPAPPSPSLTLPPLPPPATPRPQVTNMSSDESEMESSEEDVEGKYNSSGVTKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKK
        PSIPAPPSPSLTLPPLPPP T R QVTNM SDESEMESSEEDVEGKYN SGV+KTAKSG KR RCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKK
Subjt:  PSIPAPPSPSLTLPPLPPPATPRPQVTNMSSDESEMESSEEDVEGKYNSSGVTKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKK

Query:  NPVIQIRIAPKVIHDGKVNNINNDGEEREKEANDLKPYATLEDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLYYIFGFLVERLDEG
        NPVIQIRIAPKVIHDGKV NINNDGEE EKEA+DLKPYATLEDLERGKLPPEEILSLPMFKNYT G+PTSVLYIKNLAKDVLNDDLYYIFG L E +DE 
Subjt:  NPVIQIRIAPKVIHDGKVNNINNDGEEREKEANDLKPYATLEDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLYYIFGFLVERLDEG

Query:  GMAM-IHLLCLRRVQGLGFL
          A+ + L+   R++G  F+
Subjt:  GMAM-IHLLCLRRVQGLGFL

XP_008448172.1 PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Cucumis melo]6.7e-14787.5Show/hide
Query:  MEDATTKDAISKDHRSKYHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLP
        MEDA  K AISKDH S+ HTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLP
Subjt:  MEDATTKDAISKDHRSKYHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLP

Query:  PSIPAPPSPSLTLPPLPPPATPRPQVTNMSSDESEMESSEEDVEGKYNSSGVTKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKK
        PS PAPPSPSLTLPPLPPPAT R QVTNM SDESEMESSEEDVEGKYNSSGV+KTAKSG KR RCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKK
Subjt:  PSIPAPPSPSLTLPPLPPPATPRPQVTNMSSDESEMESSEEDVEGKYNSSGVTKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKK

Query:  NPVIQIRIAPKVIHDGKVNNINNDGEEREKEANDLKPYATLEDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLYYIFGFLVERLDEG
        NPVIQIRIAPKVIHDGKV+  NNDGE  EKEA+DLKPYATLEDLERGKLPPEEILSLPMFKNYT GSPTSVLYIKNLAKDVLNDDLYYIFG L E +DE 
Subjt:  NPVIQIRIAPKVIHDGKVNNINNDGEEREKEANDLKPYATLEDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLYYIFGFLVERLDEG

Query:  GMAM-IHLLCLRRVQGLGFL
          A+ + L+   R++G  F+
Subjt:  GMAM-IHLLCLRRVQGLGFL

XP_011656912.1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X3 [Cucumis sativus]4.7e-14887.81Show/hide
Query:  MEDATTKDAISKDHRSKYHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLP
        ME A  KDAISKDH S+ HTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLP
Subjt:  MEDATTKDAISKDHRSKYHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLP

Query:  PSIPAPPSPSLTLPPLPPPATPRPQVTNMSSDESEMESSEEDVEGKYNSSGVTKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKK
        PSIPAPPSPSLTLPPLPPP T R QVTNM SDESEMESSEEDVEGKYN SGV+KTAKSG KR RCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKK
Subjt:  PSIPAPPSPSLTLPPLPPPATPRPQVTNMSSDESEMESSEEDVEGKYNSSGVTKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKK

Query:  NPVIQIRIAPKVIHDGKVNNINNDGEEREKEANDLKPYATLEDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLYYIFGFLVERLDEG
        NPVIQIRIAPKVIHDGKV NINNDGEE EKEA+DLKPYATLEDLERGKLPPEEILSLPMFKNYT G+PTSVLYIKNLAKDVLNDDLYYIFG L E +DE 
Subjt:  NPVIQIRIAPKVIHDGKVNNINNDGEEREKEANDLKPYATLEDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLYYIFGFLVERLDEG

Query:  GMAM-IHLLCLRRVQGLGFL
          A+ + L+   R++G  F+
Subjt:  GMAM-IHLLCLRRVQGLGFL

XP_031743237.1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X2 [Cucumis sativus]4.7e-14887.81Show/hide
Query:  MEDATTKDAISKDHRSKYHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLP
        ME A  KDAISKDH S+ HTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLP
Subjt:  MEDATTKDAISKDHRSKYHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLP

Query:  PSIPAPPSPSLTLPPLPPPATPRPQVTNMSSDESEMESSEEDVEGKYNSSGVTKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKK
        PSIPAPPSPSLTLPPLPPP T R QVTNM SDESEMESSEEDVEGKYN SGV+KTAKSG KR RCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKK
Subjt:  PSIPAPPSPSLTLPPLPPPATPRPQVTNMSSDESEMESSEEDVEGKYNSSGVTKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKK

Query:  NPVIQIRIAPKVIHDGKVNNINNDGEEREKEANDLKPYATLEDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLYYIFGFLVERLDEG
        NPVIQIRIAPKVIHDGKV NINNDGEE EKEA+DLKPYATLEDLERGKLPPEEILSLPMFKNYT G+PTSVLYIKNLAKDVLNDDLYYIFG L E +DE 
Subjt:  NPVIQIRIAPKVIHDGKVNNINNDGEEREKEANDLKPYATLEDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLYYIFGFLVERLDEG

Query:  GMAM-IHLLCLRRVQGLGFL
          A+ + L+   R++G  F+
Subjt:  GMAM-IHLLCLRRVQGLGFL

XP_038903908.1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Benincasa hispida]3.9e-14787.81Show/hide
Query:  MEDATTKDAISKDHRSKYHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLP
        MEDA  KDAISKDHRSK HTE MRARPLHFGEPIAARLGVDYPFPPHL YAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLP
Subjt:  MEDATTKDAISKDHRSKYHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLP

Query:  PSIPAPPSPSLTLPPLPPPATPRPQVTNMSSDESEMESSEEDVEGKYNSSGVTKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKK
        PSIPA PS    LPPLPPPATPRPQVTNMSSDESEMESSEEDV+GKYNSSGV+KTAKSG+KRSRCETIVGPGIDK+VAHEAVGVKPSTLVPKEIPMIKKK
Subjt:  PSIPAPPSPSLTLPPLPPPATPRPQVTNMSSDESEMESSEEDVEGKYNSSGVTKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKK

Query:  NPVIQIRIAPKVIHDGKVNNINNDGEEREKEANDLKPYATLEDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLYYIFGFLVERLDEG
        NPVIQIRIAPKVIHDGKV+NINND EE EKEANDLKPYATLEDLERGKLPPEEILSLPMFKNYT G+PTSVLYIKNLAKDVLNDDLYYIFG L E +DE 
Subjt:  NPVIQIRIAPKVIHDGKVNNINNDGEEREKEANDLKPYATLEDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLYYIFGFLVERLDEG

Query:  GMAM-IHLLCLRRVQGLGFL
          A+ + L+   R++G  F+
Subjt:  GMAM-IHLLCLRRVQGLGFL

TrEMBL top hitse value%identityAlignment
A0A0A0KCT1 RRM domain-containing protein2.3e-14887.81Show/hide
Query:  MEDATTKDAISKDHRSKYHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLP
        ME A  KDAISKDH S+ HTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLP
Subjt:  MEDATTKDAISKDHRSKYHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLP

Query:  PSIPAPPSPSLTLPPLPPPATPRPQVTNMSSDESEMESSEEDVEGKYNSSGVTKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKK
        PSIPAPPSPSLTLPPLPPP T R QVTNM SDESEMESSEEDVEGKYN SGV+KTAKSG KR RCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKK
Subjt:  PSIPAPPSPSLTLPPLPPPATPRPQVTNMSSDESEMESSEEDVEGKYNSSGVTKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKK

Query:  NPVIQIRIAPKVIHDGKVNNINNDGEEREKEANDLKPYATLEDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLYYIFGFLVERLDEG
        NPVIQIRIAPKVIHDGKV NINNDGEE EKEA+DLKPYATLEDLERGKLPPEEILSLPMFKNYT G+PTSVLYIKNLAKDVLNDDLYYIFG L E +DE 
Subjt:  NPVIQIRIAPKVIHDGKVNNINNDGEEREKEANDLKPYATLEDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLYYIFGFLVERLDEG

Query:  GMAM-IHLLCLRRVQGLGFL
          A+ + L+   R++G  F+
Subjt:  GMAM-IHLLCLRRVQGLGFL

A0A1S3BIH7 U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X13.3e-14787.5Show/hide
Query:  MEDATTKDAISKDHRSKYHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLP
        MEDA  K AISKDH S+ HTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLP
Subjt:  MEDATTKDAISKDHRSKYHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLP

Query:  PSIPAPPSPSLTLPPLPPPATPRPQVTNMSSDESEMESSEEDVEGKYNSSGVTKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKK
        PS PAPPSPSLTLPPLPPPAT R QVTNM SDESEMESSEEDVEGKYNSSGV+KTAKSG KR RCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKK
Subjt:  PSIPAPPSPSLTLPPLPPPATPRPQVTNMSSDESEMESSEEDVEGKYNSSGVTKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKK

Query:  NPVIQIRIAPKVIHDGKVNNINNDGEEREKEANDLKPYATLEDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLYYIFGFLVERLDEG
        NPVIQIRIAPKVIHDGKV+  NNDGE  EKEA+DLKPYATLEDLERGKLPPEEILSLPMFKNYT GSPTSVLYIKNLAKDVLNDDLYYIFG L E +DE 
Subjt:  NPVIQIRIAPKVIHDGKVNNINNDGEEREKEANDLKPYATLEDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLYYIFGFLVERLDEG

Query:  GMAM-IHLLCLRRVQGLGFL
          A+ + L+   R++G  F+
Subjt:  GMAM-IHLLCLRRVQGLGFL

A0A1S3BJ40 U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X43.4e-14493.13Show/hide
Query:  MEDATTKDAISKDHRSKYHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLP
        MEDA  K AISKDH S+ HTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLP
Subjt:  MEDATTKDAISKDHRSKYHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLP

Query:  PSIPAPPSPSLTLPPLPPPATPRPQVTNMSSDESEMESSEEDVEGKYNSSGVTKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKK
        PS PAPPSPSLTLPPLPPPAT R QVTNM SDESEMESSEEDVEGKYNSSGV+KTAKSG KR RCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKK
Subjt:  PSIPAPPSPSLTLPPLPPPATPRPQVTNMSSDESEMESSEEDVEGKYNSSGVTKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKK

Query:  NPVIQIRIAPKVIHDGKVNNINNDGEEREKEANDLKPYATLEDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLYYIFG
        NPVIQIRIAPKVIHDGKV+  NNDGE  EKEA+DLKPYATLEDLERGKLPPEEILSLPMFKNYT GSPTSVLYIKNLAKDVLNDDLYYIFG
Subjt:  NPVIQIRIAPKVIHDGKVNNINNDGEEREKEANDLKPYATLEDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLYYIFG

A0A1S3BJY8 U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X23.3e-14787.5Show/hide
Query:  MEDATTKDAISKDHRSKYHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLP
        MEDA  K AISKDH S+ HTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLP
Subjt:  MEDATTKDAISKDHRSKYHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLP

Query:  PSIPAPPSPSLTLPPLPPPATPRPQVTNMSSDESEMESSEEDVEGKYNSSGVTKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKK
        PS PAPPSPSLTLPPLPPPAT R QVTNM SDESEMESSEEDVEGKYNSSGV+KTAKSG KR RCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKK
Subjt:  PSIPAPPSPSLTLPPLPPPATPRPQVTNMSSDESEMESSEEDVEGKYNSSGVTKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKK

Query:  NPVIQIRIAPKVIHDGKVNNINNDGEEREKEANDLKPYATLEDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLYYIFGFLVERLDEG
        NPVIQIRIAPKVIHDGKV+  NNDGE  EKEA+DLKPYATLEDLERGKLPPEEILSLPMFKNYT GSPTSVLYIKNLAKDVLNDDLYYIFG L E +DE 
Subjt:  NPVIQIRIAPKVIHDGKVNNINNDGEEREKEANDLKPYATLEDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLYYIFGFLVERLDEG

Query:  GMAM-IHLLCLRRVQGLGFL
          A+ + L+   R++G  F+
Subjt:  GMAM-IHLLCLRRVQGLGFL

A0A1S4DX29 U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X81.5e-14492.49Show/hide
Query:  MEDATTKDAISKDHRSKYHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLP
        MEDA  K AISKDH S+ HTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLP
Subjt:  MEDATTKDAISKDHRSKYHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLP

Query:  PSIPAPPSPSLTLPPLPPPATPRPQVTNMSSDESEMESSEEDVEGKYNSSGVTKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKK
        PS PAPPSPSLTLPPLPPPAT R QVTNM SDESEMESSEEDVEGKYNSSGV+KTAKSG KR RCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKK
Subjt:  PSIPAPPSPSLTLPPLPPPATPRPQVTNMSSDESEMESSEEDVEGKYNSSGVTKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKK

Query:  NPVIQIRIAPKVIHDGKVNNINNDGEEREKEANDLKPYATLEDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLYYIFGFL
        NPVIQIRIAPKVIHDGKV+  NNDGE  EKEA+DLKPYATLEDLERGKLPPEEILSLPMFKNYT GSPTSVLYIKNLAKDVLNDDLYYIFG++
Subjt:  NPVIQIRIAPKVIHDGKVNNINNDGEEREKEANDLKPYATLEDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLYYIFGFL

SwissProt top hitse value%identityAlignment
F1Q8J0 RNA-binding region-containing protein 34.9e-2331.93Show/hide
Query:  IAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSIPAPPSPSLTLPPLPPPATPRPQVTNM-SSD
        IA  LG+ +   P L+Y YPPP   ILTNI + L++VP+FY QVLHLMNKMN+P+PFR P+  PP    +P+ P P    PP PP   P P+     S +
Subjt:  IAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSIPAPPSPSLTLPPLPPPATPRPQVTNM-SSD

Query:  ESEMES-SEEDVEGKYNSSGV----------TKTAKSGNKRSRCETIVGPGIDK-----------DVAHE--AVGVKPSTL-VPKEIPMI----------
        ESE ES  EE+ E      G+          TKT+    K    + +  P  D            DV  +  A+G K     +  E+  I          
Subjt:  ESEMES-SEEDVEGKYNSSGV----------TKTAKSGNKRSRCETIVGPGIDK-----------DVAHE--AVGVKPSTL-VPKEIPMI----------

Query:  -----KKKNPVIQIRIAPKVIHDGKV---NNINNDGEEREKEANDLKPYATLEDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLYYI
              +  P +++         GK+     +    EE+E++ +    + +  +LERG+L  +EI  L +FK Y  G PT  LY+KN+AK V   DL +I
Subjt:  -----KKKNPVIQIRIAPKVIHDGKV---NNINNDGEEREKEANDLKPYATLEDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLYYI

Query:  FGFLVERLDEGGMAMIHLLCLR--RVQGLGFL
        +G  ++   E    M  ++ ++  R++G  F+
Subjt:  FGFLVERLDEGGMAMIHLLCLR--RVQGLGFL

Q4G055 RNA-binding region-containing protein 31.0e-2030.59Show/hide
Query:  IAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTP-----------PLPPSIPAPPSPSLTLPPLPPPATP
        IA   G+ +P    L+Y YPPP   IL NIVNAL +VP+FY QVLHLMNKMN+P PF      P           PLPP+ P PP      PPLP     
Subjt:  IAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTP-----------PLPPSIPAPPSPSLTLPPLPPPATP

Query:  RPQVTNMSSDESEMESSEEDVEGKYNS-----------SGVTKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPVIQIRIAPK
          +  ++SS ESE ESS+E+   + N                K      KR   + +  P       H    + PS +  +  P+  KK         P 
Subjt:  RPQVTNMSSDESEMESSEEDVEGKYNS-----------SGVTKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPVIQIRIAPK

Query:  VIHDGKVNNINNDGE----------------------------EREKEANDLKP--YATLEDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDV
         ++       NN+ +                            E  KE +D  P  + +  +LE+G++  EE+ +L +F++Y  G P   +Y+KNLA+ V
Subjt:  VIHDGKVNNINNDGE----------------------------EREKEANDLKP--YATLEDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDV

Query:  LNDDLYYIFGFLVERLDEGGMAM--IHLLCLRRVQGLGFL
           DL +IFG  V+   E    M  I L+   R++G  F+
Subjt:  LNDDLYYIFGFLVERLDEGGMAM--IHLLCLRRVQGLGFL

Q5R6C7 RNA-binding region-containing protein 31.0e-2032.34Show/hide
Query:  IAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF-----RLPLPTPPLPPSIPAPPSPSLTLPPLPPPATPRPQV-T
        IA   G+ +P    L+Y YPPP   IL NIVNAL +VP+FY QVLHLMNKMN+P PF     R P+    +P   P PP+      P PP   P P+   
Subjt:  IAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF-----RLPLPTPPLPPSIPAPPSPSLTLPPLPPPATPRPQV-T

Query:  NMSSDESEMESSEEDVEGKYN--------SSGVTKTAKSGNKRSR------CETIVGPGID---------------KDVAHEAVGVKPSTLVP-------
         +SS+ESE ES++++   + N             KT K  + R +        T + P                  + V ++ +    ST +P       
Subjt:  NMSSDESEMESSEEDVEGKYN--------SSGVTKTAKSGNKRSR------CETIVGPGID---------------KDVAHEAVGVKPSTLVP-------

Query:  -KEIPMIKKKNPVIQIRIAPKVIHDGKV-NNINNDGEEREKEANDLKPYATL--EDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLY
         KE    +K + +    +    I  GK+    N D  E  KE +D  P   +   +LE+G++  EE+ +L +F++Y  G P   +Y+KNLAK V   DL 
Subjt:  -KEIPMIKKKNPVIQIRIAPKVIHDGKV-NNINNDGEEREKEANDLKPYATL--EDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLY

Query:  YIFGFLVERLDEGGMAM--IHLLCLRRVQGLGFL
        YIFG  V+   E    M  I L+   R++G  F+
Subjt:  YIFGFLVERLDEGGMAM--IHLLCLRRVQGLGFL

Q8RWV8 U11/U12 small nuclear ribonucleoprotein 65 kDa protein1.1e-7254.95Show/hide
Query:  GEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSIPAPPSPSLTLPPLPPPATPRPQVTNMS
        GEPIA +LG+DYPFPPHL+YAYPPPD NIL NI NALIAVP  YTQVLHLMNKMN+P PFRL LPTPPLP + P                  +  + + S
Subjt:  GEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSIPAPPSPSLTLPPLPPPATPRPQVTNMS

Query:  SDESEMESSEEDVEGKYNSSGVTKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHDG-KVNNINND--GEE
        S ESEMES E+             T+KSG KR+R   +VG G+DKDV HE VGVKPS+L PKEIP I+K   V+QI+I  KV  D  K  + N D   E 
Subjt:  SDESEMESSEEDVEGKYNSSGVTKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHDG-KVNNINND--GEE

Query:  REKEANDLKPYATLEDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLYYIFGFLVERLDEGGMAM-IHLLCLRRVQGLGFL
        +EK++N LKP+A+LE+LE+G+LPP++ILSLPMFKNYT G+P+ VLYIKNLAKDV+ DD YYIFG   E  +    ++ + L+   R++G  FL
Subjt:  REKEANDLKPYATLEDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLYYIFGFLVERLDEGGMAM-IHLLCLRRVQGLGFL

Q96LT9 RNA-binding region-containing protein 37.8e-2132.34Show/hide
Query:  IAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF-----RLPLPTPPLPPSIPAPPSPSLTLPPLPPPATPRP-QVT
        IA   G+ +P    L+Y YPPP   IL NIVNAL +VP+FY QVLHLMNKMN+P PF     R P+    +P   P PP+      P PP   P P +  
Subjt:  IAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF-----RLPLPTPPLPPSIPAPPSPSLTLPPLPPPATPRP-QVT

Query:  NMSSDESEMESSEEDVEGKYN--------SSGVTKTAKSGNKRSR------CETIVGPGID---------------KDVAHEAVGVKPSTLVP-------
         +SS+ESE ES++++   + N             KT K  + R +        T + P                  + V ++ +    ST +P       
Subjt:  NMSSDESEMESSEEDVEGKYN--------SSGVTKTAKSGNKRSR------CETIVGPGID---------------KDVAHEAVGVKPSTLVP-------

Query:  -KEIPMIKKKNPVIQIRIAPKVIHDGKV-NNINNDGEEREKEANDLKPYATL--EDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLY
         KE    +K + +    +    I  GK+    N D  E  KE +D  P   +   +LE+G++  EE+ +L +F++Y  G P   +Y+KNLAK V   DL 
Subjt:  -KEIPMIKKKNPVIQIRIAPKVIHDGKV-NNINNDGEEREKEANDLKPYATL--EDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLY

Query:  YIFGFLVERLDEGGMAM--IHLLCLRRVQGLGFL
        YIFG  V+   E    M  I L+   R++G  F+
Subjt:  YIFGFLVERLDEGGMAM--IHLLCLRRVQGLGFL

Arabidopsis top hitse value%identityAlignment
AT1G09230.1 RNA-binding (RRM/RBD/RNP motifs) family protein8.1e-7454.95Show/hide
Query:  GEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSIPAPPSPSLTLPPLPPPATPRPQVTNMS
        GEPIA +LG+DYPFPPHL+YAYPPPD NIL NI NALIAVP  YTQVLHLMNKMN+P PFRL LPTPPLP + P                  +  + + S
Subjt:  GEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSIPAPPSPSLTLPPLPPPATPRPQVTNMS

Query:  SDESEMESSEEDVEGKYNSSGVTKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHDG-KVNNINND--GEE
        S ESEMES E+             T+KSG KR+R   +VG G+DKDV HE VGVKPS+L PKEIP I+K   V+QI+I  KV  D  K  + N D   E 
Subjt:  SDESEMESSEEDVEGKYNSSGVTKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHDG-KVNNINND--GEE

Query:  REKEANDLKPYATLEDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLYYIFGFLVERLDEGGMAM-IHLLCLRRVQGLGFL
        +EK++N LKP+A+LE+LE+G+LPP++ILSLPMFKNYT G+P+ VLYIKNLAKDV+ DD YYIFG   E  +    ++ + L+   R++G  FL
Subjt:  REKEANDLKPYATLEDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLYYIFGFLVERLDEGGMAM-IHLLCLRRVQGLGFL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGATGCTACCACAAAAGATGCCATATCTAAGGACCATAGGAGTAAATATCATACTGAGGGTATGAGAGCTAGGCCTCTGCATTTTGGTGAGCCAATTGCT
GCAAGGCTTGGTGTGGACTATCCATTCCCTCCTCATCTTGAGTATGCTTATCCTCCACCAGATGGTAATATCCTGACCAACATTGTTAATGCCCTCATAGCTGTC
CCTCGCTTCTATACTCAGGTGCTGCATTTAATGAACAAGATGAACATTCCAGCTCCATTCCGATTGCCTCTACCCACTCCACCTCTCCCACCTTCCATTCCTGCA
CCACCATCACCATCATTAACGCTGCCACCTCTTCCTCCTCCTGCCACTCCAAGGCCTCAAGTAACAAATATGTCCAGTGATGAGTCAGAAATGGAGTCCTCAGAA
GAGGATGTGGAAGGAAAATATAATTCAAGTGGAGTTACAAAAACTGCAAAATCAGGAAACAAGCGTTCTAGGTGTGAAACGATTGTAGGCCCTGGGATAGACAAA
GATGTGGCTCATGAGGCTGTTGGGGTGAAACCTTCCACATTGGTTCCGAAAGAGATTCCTATGATAAAAAAGAAAAACCCAGTGATTCAGATTAGAATTGCCCCT
AAAGTGATTCACGATGGAAAAGTCAATAACATTAATAATGATGGTGAAGAGAGAGAAAAGGAAGCAAATGATCTTAAGCCCTATGCAACACTCGAAGATTTAGAG
AGAGGAAAATTGCCTCCAGAAGAAATTCTTTCACTTCCAATGTTCAAGAACTATACTACTGGGAGTCCTACTTCGGTGCTGTATATCAAGAACTTAGCCAAAGAT
GTATTGAATGATGACCTCTACTATATTTTTGGTTTTCTTGTTGAAAGGTTGGATGAGGGCGGAATGGCCATGATACATTTGCTGTGCCTGCGGAGAGTTCAAGGG
CTGGGTTTTCTTGTTGATATAGTATGGCAGGCATACAGAAAGCAGTGGAACTCCTTACCCAAGAAAGAGGTAAAACTAATACAGCCAACATTCAAGAACAAAACC
TTAACTCTCAATGCGTCCATGAACATATTACCAATCAATGCAGAGAACAAGAATGAGCGGCTGTACCTCAAATGCTGCAAGAAAGAGGAAATCCTAGACATCCAA
GATTCCAAGAAACACAAAGAACCCAAGAGAGAGGCAGAACCACCTCGAACCTCAAGTTGGTTTCGGTCGAAGAGGCCAATTTGGGTTGAATTTACAAAATCCTGT
ACAAGGCCACCGATTCTTGCATCAAAGACCTCTTCCCCACAATGTAGTTGGCTTGGATTCAGACTCTTTGGATCCTCGACTCAAATATAA
mRNA sequenceShow/hide mRNA sequence
AAAAATTAACACCACCAACTACTTCTCCCTCCGTAAGAGAAAAAACCTTCCTCTCCCTGCTCCCTTCTCGCGGTCGTGGTTGAACCACTGGCCTGCCCACCCCTG
AATTTCCTGCCAATCTCGCTCACTCTCAGCTCGCCTATACGATTCTCTCTCTCTCTCTCACACACACACAGCAAAATCTTCATTGGACAACTCGAGAAGCGCTCC
TCTCTAACCCCACTTCTCTTTTTCGATCCTCCCGGTAGTCTGTCACTCATTGGCTGCTTCAAGGCTGAAGCTTCTTGGTTAACTTTTAGCAGAGGGAAGGGCTAC
TAGACAAATTTAATAGTATAAATCTAAAGAGTGTATCTGTGTCCAGGAGGGATTTTGTGTTATCCTCATCTTTTCAGATGGAGGATGCTACCACAAAAGATGCCA
TATCTAAGGACCATAGGAGTAAATATCATACTGAGGGTATGAGAGCTAGGCCTCTGCATTTTGGTGAGCCAATTGCTGCAAGGCTTGGTGTGGACTATCCATTCC
CTCCTCATCTTGAGTATGCTTATCCTCCACCAGATGGTAATATCCTGACCAACATTGTTAATGCCCTCATAGCTGTCCCTCGCTTCTATACTCAGGTGCTGCATT
TAATGAACAAGATGAACATTCCAGCTCCATTCCGATTGCCTCTACCCACTCCACCTCTCCCACCTTCCATTCCTGCACCACCATCACCATCATTAACGCTGCCAC
CTCTTCCTCCTCCTGCCACTCCAAGGCCTCAAGTAACAAATATGTCCAGTGATGAGTCAGAAATGGAGTCCTCAGAAGAGGATGTGGAAGGAAAATATAATTCAA
GTGGAGTTACAAAAACTGCAAAATCAGGAAACAAGCGTTCTAGGTGTGAAACGATTGTAGGCCCTGGGATAGACAAAGATGTGGCTCATGAGGCTGTTGGGGTGA
AACCTTCCACATTGGTTCCGAAAGAGATTCCTATGATAAAAAAGAAAAACCCAGTGATTCAGATTAGAATTGCCCCTAAAGTGATTCACGATGGAAAAGTCAATA
ACATTAATAATGATGGTGAAGAGAGAGAAAAGGAAGCAAATGATCTTAAGCCCTATGCAACACTCGAAGATTTAGAGAGAGGAAAATTGCCTCCAGAAGAAATTC
TTTCACTTCCAATGTTCAAGAACTATACTACTGGGAGTCCTACTTCGGTGCTGTATATCAAGAACTTAGCCAAAGATGTATTGAATGATGACCTCTACTATATTT
TTGGTTTTCTTGTTGAAAGGTTGGATGAGGGCGGAATGGCCATGATACATTTGCTGTGCCTGCGGAGAGTTCAAGGGCTGGGTTTTCTTGTTGATATAGTATGGC
AGGCATACAGAAAGCAGTGGAACTCCTTACCCAAGAAAGAGGTAAAACTAATACAGCCAACATTCAAGAACAAAACCTTAACTCTCAATGCGTCCATGAACATAT
TACCAATCAATGCAGAGAACAAGAATGAGCGGCTGTACCTCAAATGCTGCAAGAAAGAGGAAATCCTAGACATCCAAGATTCCAAGAAACACAAAGAACCCAAGA
GAGAGGCAGAACCACCTCGAACCTCAAGTTGGTTTCGGTCGAAGAGGCCAATTTGGGTTGAATTTACAAAATCCTGTACAAGGCCACCGATTCTTGCATCAAAGA
CCTCTTCCCCACAATGTAGTTGGCTTGGATTCAGACTCTTTGGATCCTCGACTCAAATATAA
Protein sequenceShow/hide protein sequence
MEDATTKDAISKDHRSKYHTEGMRARPLHFGEPIAARLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRLPLPTPPLPPSIPA
PPSPSLTLPPLPPPATPRPQVTNMSSDESEMESSEEDVEGKYNSSGVTKTAKSGNKRSRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPVIQIRIAP
KVIHDGKVNNINNDGEEREKEANDLKPYATLEDLERGKLPPEEILSLPMFKNYTTGSPTSVLYIKNLAKDVLNDDLYYIFGFLVERLDEGGMAMIHLLCLRRVQG
LGFLVDIVWQAYRKQWNSLPKKEVKLIQPTFKNKTLTLNASMNILPINAENKNERLYLKCCKKEEILDIQDSKKHKEPKREAEPPRTSSWFRSKRPIWVEFTKSC
TRPPILASKTSSPQCSWLGFRLFGSSTQI