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CaUC02G033480 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC02G033480
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Description30S ribosomal protein S16, chloroplastic
Genome locationCiama_Chr02:9659135..9660394
RNA-Seq ExpressionCaUC02G033480
SyntenyCaUC02G033480
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000307 - Ribosomal protein S16
IPR023803 - Ribosomal protein S16 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4390281.1 hypothetical protein F8388_019936 [Cannabis sativa]1.8e-3264.46Show/hide
Query:  MVHDGARVESIDSFIKGRDL--------GILYITLNFLEPYEEKTSYTVLGGAVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQ
        ++HDGAR E IDSF+ G++L         +    LNFLEPYEEKTSYT LGG              EGR LRKVGFYDPIKNQTYLNVP IL FLEKGAQ
Subjt:  MVHDGARVESIDSFIKGRDL--------GILYITLNFLEPYEEKTSYTVLGGAVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQ

Query:  PTGTVHDILKKAGVFTELHLN
        PTGTVHDI KKAGVF EL LN
Subjt:  PTGTVHDILKKAGVFTELHLN

YP_009175987.1 ribosomal protein S16 [Ficus racemosa]1.4e-3267.26Show/hide
Query:  MVHDGARVESIDSFIKGRDLGILYITLNFLEPYEEKTSYTVLGGAVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDI
        ++HDGAR E IDSF  G++LG+  +++N L     K+ + +    +YRI+AIDVRSRREGR LRKVGFYDPIKNQTYLNVP ILYFLEKGAQPTGTV+DI
Subjt:  MVHDGARVESIDSFIKGRDLGILYITLNFLEPYEEKTSYTVLGGAVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDI

Query:  LKKAGVFTELHLN
         KKAGVF EL LN
Subjt:  LKKAGVFTELHLN

YP_009674373.1 ribosomal protein S16 [Siraitia grosvenorii]1.2e-31100Show/hide
Query:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

YP_009947033.1 ribosomal protein S16 [Ficus hirta]1.4e-3267.26Show/hide
Query:  MVHDGARVESIDSFIKGRDLGILYITLNFLEPYEEKTSYTVLGGAVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDI
        ++HDGAR E IDSF  G++LG+  +++N L     K+ + +    +YRI+AIDVRSRREGR LRKVGFYDPIKNQTYLNVP ILYFLEKGAQPTGTV+DI
Subjt:  MVHDGARVESIDSFIKGRDLGILYITLNFLEPYEEKTSYTVLGGAVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDI

Query:  LKKAGVFTELHLN
         KKAGVF EL LN
Subjt:  LKKAGVFTELHLN

YP_010131076.1 ribosomal protein S16 [Benincasa hispida]1.2e-31100Show/hide
Query:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

TrEMBL top hitse value%identityAlignment
A0A0N7H9X6 Ribosomal protein S166.8e-3367.26Show/hide
Query:  MVHDGARVESIDSFIKGRDLGILYITLNFLEPYEEKTSYTVLGGAVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDI
        ++HDGAR E IDSF  G++LG+  +++N L     K+ + +    +YRI+AIDVRSRREGR LRKVGFYDPIKNQTYLNVP ILYFLEKGAQPTGTV+DI
Subjt:  MVHDGARVESIDSFIKGRDLGILYITLNFLEPYEEKTSYTVLGGAVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDI

Query:  LKKAGVFTELHLN
         KKAGVF EL LN
Subjt:  LKKAGVFTELHLN

A0A1Z1G9R4 Ribosomal protein S166.8e-3367.26Show/hide
Query:  MVHDGARVESIDSFIKGRDLGILYITLNFLEPYEEKTSYTVLGGAVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDI
        ++HDGAR E IDSF  G++LG+  +++N L     K+ + +    +YRI+AIDVRSRREGR LRKVGFYDPIKNQTYLNVP ILYFLEKGAQPTGTV+DI
Subjt:  MVHDGARVESIDSFIKGRDLGILYITLNFLEPYEEKTSYTVLGGAVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDI

Query:  LKKAGVFTELHLN
         KKAGVF EL LN
Subjt:  LKKAGVFTELHLN

A0A218KG12 30S ribosomal protein S16, chloroplastic5.7e-32100Show/hide
Query:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

A0A6B9M313 Ribosomal protein S166.8e-3367.26Show/hide
Query:  MVHDGARVESIDSFIKGRDLGILYITLNFLEPYEEKTSYTVLGGAVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDI
        ++HDGAR E IDSF  G++LG+  +++N L     K+ + +    +YRI+AIDVRSRREGR LRKVGFYDPIKNQTYLNVP ILYFLEKGAQPTGTV+DI
Subjt:  MVHDGARVESIDSFIKGRDLGILYITLNFLEPYEEKTSYTVLGGAVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDI

Query:  LKKAGVFTELHLN
         KKAGVF EL LN
Subjt:  LKKAGVFTELHLN

A0A7J6H5W4 Uncharacterized protein8.8e-3364.46Show/hide
Query:  MVHDGARVESIDSFIKGRDL--------GILYITLNFLEPYEEKTSYTVLGGAVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQ
        ++HDGAR E IDSF+ G++L         +    LNFLEPYEEKTSYT LGG              EGR LRKVGFYDPIKNQTYLNVP IL FLEKGAQ
Subjt:  MVHDGARVESIDSFIKGRDL--------GILYITLNFLEPYEEKTSYTVLGGAVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQ

Query:  PTGTVHDILKKAGVFTELHLN
        PTGTVHDI KKAGVF EL LN
Subjt:  PTGTVHDILKKAGVFTELHLN

SwissProt top hitse value%identityAlignment
A0ZZ17 30S ribosomal protein S16, chloroplastic1.6e-3192.86Show/hide
Query:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        AVYRI+ IDVRSRREGRDLRKVGFYDPI NQTYLNVPAILYFLEKGAQPT TVHDILKKAGVFTEL LNQ
Subjt:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

Q0ZJ38 30S ribosomal protein S16, chloroplastic1.0e-3091.43Show/hide
Query:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        AVYRI+AID RSRREGRDLRKVGFYDPIKNQTY NVPAILYFLEKGAQPTGTVHDI KKA VFTEL LNQ
Subjt:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

Q2L8Y7 30S ribosomal protein S16, chloroplastic5.5e-3294.29Show/hide
Query:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        AVYRI+AIDVRSRREGRDLRKVGFYDPI NQTYLNVPAILYFLEKGAQPT TVHDILKKAGVFTEL LNQ
Subjt:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

Q2QDA6 30S ribosomal protein S16, chloroplastic1.6e-34100Show/hide
Query:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

Q6EW66 30S ribosomal protein S16, chloroplastic1.8e-3091.43Show/hide
Query:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        A YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDI KKA VF EL +NQ
Subjt:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

Arabidopsis top hitse value%identityAlignment
AT4G34620.1 small subunit ribosomal protein 168.8e-0940Show/hide
Query:  YRIIAIDVRSRREGRDLRKVGFYDPIK-----NQTYLNVPAILYFLEKGAQPTGTVHDILKKAGV
        YR++  D +SRR+G+ +  +GFYDP++     ++  L    I Y+L  GAQPT TV  +L +AG+
Subjt:  YRIIAIDVRSRREGRDLRKVGFYDPIK-----NQTYLNVPAILYFLEKGAQPTGTVHDILKKAGV

AT5G56940.1 Ribosomal protein S16 family protein4.5e-0533.85Show/hide
Query:  YRIIAIDVRSRREGRDLRKVGFYDPIKNQ-----TYLNVPAILYFLEKGAQPTGTVHDILKKAGV
        +R++A D RS R+G+ L  +G+++P+  Q       L    I Y+L  GAQP+  V  +L ++G+
Subjt:  YRIIAIDVRSRREGRDLRKVGFYDPIKNQ-----TYLNVPAILYFLEKGAQPTGTVHDILKKAGV

ATCG00050.1 ribosomal protein S161.5e-2480Show/hide
Query:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTE
        AVYRI+AIDVR RREGRDL KVGFYDPI NQT+LN+ AIL FL+KGAQPT T HDI KKAG+FTE
Subjt:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTACATGATGGAGCTCGAGTAGAAAGTATTGATTCATTTATCAAGGGCAGAGATCTAGGAATTCTATACATAACTTTGAATTTCCTCGAGCCGTACGAGGAGAAAAC
TTCTTATACGGTTCTGGGGGGGGCCGTTTATCGAATCATTGCAATTGATGTTCGATCCCGAAGAGAAGGAAGAGATCTTCGTAAAGTGGGTTTTTATGATCCGATAAAGA
ATCAAACCTATTTAAATGTTCCTGCTATTCTATATTTCCTTGAAAAGGGTGCTCAACCTACAGGAACTGTTCATGATATTTTAAAGAAGGCAGGTGTTTTTACGGAACTT
CACCTTAATCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGTACATGATGGAGCTCGAGTAGAAAGTATTGATTCATTTATCAAGGGCAGAGATCTAGGAATTCTATACATAACTTTGAATTTCCTCGAGCCGTACGAGGAGAAAAC
TTCTTATACGGTTCTGGGGGGGGCCGTTTATCGAATCATTGCAATTGATGTTCGATCCCGAAGAGAAGGAAGAGATCTTCGTAAAGTGGGTTTTTATGATCCGATAAAGA
ATCAAACCTATTTAAATGTTCCTGCTATTCTATATTTCCTTGAAAAGGGTGCTCAACCTACAGGAACTGTTCATGATATTTTAAAGAAGGCAGGTGTTTTTACGGAACTT
CACCTTAATCAATAA
Protein sequenceShow/hide protein sequence
MVHDGARVESIDSFIKGRDLGILYITLNFLEPYEEKTSYTVLGGAVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTEL
HLNQ