; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC02G034040 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC02G034040
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionMitochondrial transcription factor 1
Genome locationCiama_Chr02:10739860..10740234
RNA-Seq ExpressionCaUC02G034040
SyntenyCaUC02G034040
Gene Ontology termsGO:0006418 - tRNA aminoacylation for protein translation (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0000166 - nucleotide binding (molecular function)
GO:0004812 - aminoacyl-tRNA ligase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB3468399.1 unnamed protein product [Digitaria exilis]5.1e-1245.79Show/hide
Query:  MLVAVPATGEAGHVLILTPLVVFIMVQFFTMIPSTGSSLVYFPRLPMLIPCPGPHVTLVTFTRLLPSPREMQSSPVEIRDFVIEIPIDRPMCIPSVLGLF
        +L AV     + + LI  PL+ F+ VQ FT++  T  S +Y PRLPM +P PGP VT V    +LP P EMQSSP  +   +I  P++ PM +PSVLGL 
Subjt:  MLVAVPATGEAGHVLILTPLVVFIMVQFFTMIPSTGSSLVYFPRLPMLIPCPGPHVTLVTFTRLLPSPREMQSSPVEIRDFVIEIPIDRPMCIPSVLGLF

Query:  SGAIMLT
         GA  +T
Subjt:  SGAIMLT

GER48275.1 mitochondrial transcription factor 1 [Striga asiatica]1.2e-1651.24Show/hide
Query:  IGLLTLTIIISEKCMLVAVPATGEAGHVLILTPLVVFIMVQFFTMIPSTGSSLVYFPRLPMLIPCPGPHVTLVTFTRLLPSPREMQSSPVEIRDFVIEIP
        +GLL     IS            +  HVLILTP  V   VQFF +  +T  S  YFPRLPMLIPCPGPH T VTFT + PSP + QSSPV I + VI + 
Subjt:  IGLLTLTIIISEKCMLVAVPATGEAGHVLILTPLVVFIMVQFFTMIPSTGSSLVYFPRLPMLIPCPGPHVTLVTFTRLLPSPREMQSSPVEIRDFVIEIP

Query:  IDRPMCIPSVLGLFSGAIMLT
        ++R M  PSVLGL  GA M T
Subjt:  IDRPMCIPSVLGLFSGAIMLT

GER53395.1 pleiotropic drug resistance 1 [Striga asiatica]2.6e-0840.5Show/hide
Query:  MRIGLLTLTIIISEKCMLVAVPATGEAGHVLILTPLVVFIMVQFFTMIPSTGSSLVYFPRLPMLIPCPGPHVTLVTFTRLLPSPREMQSSPVEIRDFVIE
        M IG  T  + IS   M  A     +  HVL+ TP  V    Q  T  P T S     PRLP L+P PGP  T    T  +P   +MQSSPV IR+  + 
Subjt:  MRIGLLTLTIIISEKCMLVAVPATGEAGHVLILTPLVVFIMVQFFTMIPSTGSSLVYFPRLPMLIPCPGPHVTLVTFTRLLPSPREMQSSPVEIRDFVIE

Query:  IPIDRPMCIPSVLGLFSGAIM
        + ++ PM +PSVLGL +GA++
Subjt:  IPIDRPMCIPSVLGLFSGAIM

KAB8084694.1 hypothetical protein EE612_007312 [Oryza sativa]4.0e-0943.2Show/hide
Query:  MRIGLLTLTIIISEKCMLVAVPATGEAGHVLILTPLVVFIMVQFFTMIPSTGSSLV--YFPRLPMLIPCPGPHVTLVTFTRLLPSPREMQSSPVEIRDFV
        M +GL T  ++ SE    +  P   E  HVLI  PLVV +    FT+   T S+ +   FPRLPML+P PGPH T       LP P E QSSPV +    
Subjt:  MRIGLLTLTIIISEKCMLVAVPATGEAGHVLILTPLVVFIMVQFFTMIPSTGSSLV--YFPRLPMLIPCPGPHVTLVTFTRLLPSPREMQSSPVEIRDFV

Query:  IEIPIDRPMCIPSVLGLFSGAIMLT
            +D  MCIPSV GL +GA  +T
Subjt:  IEIPIDRPMCIPSVLGLFSGAIMLT

PIN11476.1 hypothetical protein CDL12_15921 [Handroanthus impetiginosus]1.9e-1151.22Show/hide
Query:  GEAGHVLILTPLVVFIMVQFFTMIPSTGSSLVYFPRLPMLIPCPGPHVTLVTFTRLLPSPREMQSSPVEIRDFVIEIPIDRP
        G  GHV IL PL V + VQF T IP T  S  + PRLPMLIP PGPH+T       + SP E+QSSPV + + V+ I + RP
Subjt:  GEAGHVLILTPLVVFIMVQFFTMIPSTGSSLVYFPRLPMLIPCPGPHVTLVTFTRLLPSPREMQSSPVEIRDFVIEIPIDRP

TrEMBL top hitse value%identityAlignment
A0A0P0VBN4 Os01g0891066 protein2.0e-0943.2Show/hide
Query:  MRIGLLTLTIIISEKCMLVAVPATGEAGHVLILTPLVVFIMVQFFTMIPSTGSSLV--YFPRLPMLIPCPGPHVTLVTFTRLLPSPREMQSSPVEIRDFV
        M +GL T  ++ SE    +  P   E  HVLI  PLVV +    FT+   T S+ +   FPRLPML+P PGPH T       LP P E QSSPV +    
Subjt:  MRIGLLTLTIIISEKCMLVAVPATGEAGHVLILTPLVVFIMVQFFTMIPSTGSSLV--YFPRLPMLIPCPGPHVTLVTFTRLLPSPREMQSSPVEIRDFV

Query:  IEIPIDRPMCIPSVLGLFSGAIMLT
            +D  MCIPSV GL +GA  +T
Subjt:  IEIPIDRPMCIPSVLGLFSGAIMLT

A0A2G9H1U6 Uncharacterized protein9.4e-1251.22Show/hide
Query:  GEAGHVLILTPLVVFIMVQFFTMIPSTGSSLVYFPRLPMLIPCPGPHVTLVTFTRLLPSPREMQSSPVEIRDFVIEIPIDRP
        G  GHV IL PL V + VQF T IP T  S  + PRLPMLIP PGPH+T       + SP E+QSSPV + + V+ I + RP
Subjt:  GEAGHVLILTPLVVFIMVQFFTMIPSTGSSLVYFPRLPMLIPCPGPHVTLVTFTRLLPSPREMQSSPVEIRDFVIEIPIDRP

A0A5A7QSC8 Mitochondrial transcription factor 15.7e-1751.24Show/hide
Query:  IGLLTLTIIISEKCMLVAVPATGEAGHVLILTPLVVFIMVQFFTMIPSTGSSLVYFPRLPMLIPCPGPHVTLVTFTRLLPSPREMQSSPVEIRDFVIEIP
        +GLL     IS            +  HVLILTP  V   VQFF +  +T  S  YFPRLPMLIPCPGPH T VTFT + PSP + QSSPV I + VI + 
Subjt:  IGLLTLTIIISEKCMLVAVPATGEAGHVLILTPLVVFIMVQFFTMIPSTGSSLVYFPRLPMLIPCPGPHVTLVTFTRLLPSPREMQSSPVEIRDFVIEIP

Query:  IDRPMCIPSVLGLFSGAIMLT
        ++R M  PSVLGL  GA M T
Subjt:  IDRPMCIPSVLGLFSGAIMLT

A0A6N2MID2 Uncharacterized protein6.7e-1061.02Show/hide
Query:  MVQFFTMIPSTGSSLVYFPRLPMLIPCPGPHVTLVTFTRLLPSPREMQSSPVEIRDFVI
        MVQF T IP TG SL Y P+LP L+PCPGPHVT VT +  +PSP E+QSSPV I + ++
Subjt:  MVQFFTMIPSTGSSLVYFPRLPMLIPCPGPHVTLVTFTRLLPSPREMQSSPVEIRDFVI

A0A6N2MR69 Uncharacterized protein1.4e-1064.62Show/hide
Query:  ISEKCMLVAVPATGEAGHVLILTPLVVFIMVQFFTMIPSTGSSLVYFPRLPMLIPCPGPHVTLVT
        IS KCML A P   ++GH  ILTP  VF MVQF T IP TG SL Y P+LP L+PCPGPHVT VT
Subjt:  ISEKCMLVAVPATGEAGHVLILTPLVVFIMVQFFTMIPSTGSSLVYFPRLPMLIPCPGPHVTLVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAATTGGGTTGCTAACATTGACCATTATAATATCCGAAAAATGCATGTTGGTGGCAGTGCCGGCAACGGGAGAGGCTGGCCATGTTTTGATCCTAACACCA
TTAGTGGTGTTCATTATGGTGCAGTTCTTTACTATGATACCTTCAACAGGTTCTTCATTAGTGTATTTTCCAAGACTTCCTATGCTTATACCATGTCCAGGTCCG
CATGTCACGTTGGTGACTTTTACTCGTTTGCTTCCATCTCCAAGGGAGATGCAATCATCTCCGGTTGAAATTCGAGACTTTGTGATTGAGATCCCAATTGATCGG
CCAATGTGTATTCCATCTGTATTGGGACTATTTTCCGGTGCAATTATGTTGACACCATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGAATTGGGTTGCTAACATTGACCATTATAATATCCGAAAAATGCATGTTGGTGGCAGTGCCGGCAACGGGAGAGGCTGGCCATGTTTTGATCCTAACACCA
TTAGTGGTGTTCATTATGGTGCAGTTCTTTACTATGATACCTTCAACAGGTTCTTCATTAGTGTATTTTCCAAGACTTCCTATGCTTATACCATGTCCAGGTCCG
CATGTCACGTTGGTGACTTTTACTCGTTTGCTTCCATCTCCAAGGGAGATGCAATCATCTCCGGTTGAAATTCGAGACTTTGTGATTGAGATCCCAATTGATCGG
CCAATGTGTATTCCATCTGTATTGGGACTATTTTCCGGTGCAATTATGTTGACACCATGA
Protein sequenceShow/hide protein sequence
MRIGLLTLTIIISEKCMLVAVPATGEAGHVLILTPLVVFIMVQFFTMIPSTGSSLVYFPRLPMLIPCPGPHVTLVTFTRLLPSPREMQSSPVEIRDFVIEIPIDR
PMCIPSVLGLFSGAIMLTP