; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC02G034060 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC02G034060
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionPectin lyase-like superfamily protein
Genome locationCiama_Chr02:10744131..10744630
RNA-Seq ExpressionCaUC02G034060
SyntenyCaUC02G034060
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR000743 - Glycoside hydrolase, family 28
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045594.1 exopolygalacturonase-like [Cucumis melo var. makuwa]4.5e-3867.77Show/hide
Query:  YPDSNLYFKDIEMVNVSNPIIIDQEYCPSNQCNKNLPSKIKISNVSFKNIRGTCVTPVVVKLVCSKDVACKGAEVIDIDLTYTESRGPITSQCVNVLNPI
        +P S+++F+DIEMVNVSNP+IIDQEYCP NQCN+ +PSKIKISNVSFKNIRGT  TPV VK+VCS+   C+G EV DIDLTY+ S GPI SQC NV  P+
Subjt:  YPDSNLYFKDIEMVNVSNPIIIDQEYCPSNQCNKNLPSKIKISNVSFKNIRGTCVTPVVVKLVCSKDVACKGAEVIDIDLTYTESRGPITSQCVNVLNPI

Query:  IVEKQNPPACAEAAPINAPPS
        I  KQNPP C E AP   P S
Subjt:  IVEKQNPPACAEAAPINAPPS

KAA0045610.1 exopolygalacturonase-like [Cucumis melo var. makuwa]4.5e-3867.77Show/hide
Query:  YPDSNLYFKDIEMVNVSNPIIIDQEYCPSNQCNKNLPSKIKISNVSFKNIRGTCVTPVVVKLVCSKDVACKGAEVIDIDLTYTESRGPITSQCVNVLNPI
        +P S+++F+DIEMVNVSNP+IIDQEYCP NQCN+ +PSKIKISNVSFKNIRGT  TPV VK+VCS+   C+G EV DIDLTY+ S GPI SQC NV  P+
Subjt:  YPDSNLYFKDIEMVNVSNPIIIDQEYCPSNQCNKNLPSKIKISNVSFKNIRGTCVTPVVVKLVCSKDVACKGAEVIDIDLTYTESRGPITSQCVNVLNPI

Query:  IVEKQNPPACAEAAPINAPPS
        I  KQNPP C E AP   P S
Subjt:  IVEKQNPPACAEAAPINAPPS

KAA0059139.1 exopolygalacturonase-like [Cucumis melo var. makuwa]3.1e-3970.73Show/hide
Query:  YPDSNLYFKDIEMVNVSNPIIIDQEYCPSNQCNKNLPSKIKISNVSFKNIRGTCVTPVVVKLVCSKDVACKGAEVIDIDLTYTESRGPITSQCVNVLNPI
        Y  S+L+F+DIEMVNVSNPIIIDQEYCPSNQCNK +PSKIKI NVSFKNIRGT  TPV +K +CSKD+ C+  EV DI+L+YT ++G ITSQC NV+ PI
Subjt:  YPDSNLYFKDIEMVNVSNPIIIDQEYCPSNQCNKNLPSKIKISNVSFKNIRGTCVTPVVVKLVCSKDVACKGAEVIDIDLTYTESRGPITSQCVNVLNPI

Query:  IVEKQNPPACAEAAPINAPPSTD
        I  KQNP AC E APIN+ PSTD
Subjt:  IVEKQNPPACAEAAPINAPPSTD

XP_016903689.1 PREDICTED: exopolygalacturonase-like, partial [Cucumis melo]4.5e-3867.77Show/hide
Query:  YPDSNLYFKDIEMVNVSNPIIIDQEYCPSNQCNKNLPSKIKISNVSFKNIRGTCVTPVVVKLVCSKDVACKGAEVIDIDLTYTESRGPITSQCVNVLNPI
        +P S+++F+DIEMVNVSNP+IIDQEYCP NQCN+ +PSKIKISNVSFKNIRGT  TPV VK+VCS+   C+G EV DIDLTY+ S GPI SQC NV  P+
Subjt:  YPDSNLYFKDIEMVNVSNPIIIDQEYCPSNQCNKNLPSKIKISNVSFKNIRGTCVTPVVVKLVCSKDVACKGAEVIDIDLTYTESRGPITSQCVNVLNPI

Query:  IVEKQNPPACAEAAPINAPPS
        I  KQNPP C E AP   P S
Subjt:  IVEKQNPPACAEAAPINAPPS

XP_038895545.1 exopolygalacturonase-like [Benincasa hispida]8.3e-4071.54Show/hide
Query:  YPDSNLYFKDIEMVNVSNPIIIDQEYCPSNQCNKNLPSKIKISNVSFKNIRGTCVTPVVVKLVCSKDVACKGAEVIDIDLTYTESRGPITSQCVNVLNPI
        +P  +++F+DIEMVNVSNPIIIDQEYCP NQCN+ +PSKIKIS VSFKNI+GT  TPV VKLVCSK V C+G EV DIDL+Y+ S+GPITSQC NV NPI
Subjt:  YPDSNLYFKDIEMVNVSNPIIIDQEYCPSNQCNKNLPSKIKISNVSFKNIRGTCVTPVVVKLVCSKDVACKGAEVIDIDLTYTESRGPITSQCVNVLNPI

Query:  IVEKQNPPACAEAAPINAPPSTD
        +  KQNP  CAE API+A PSTD
Subjt:  IVEKQNPPACAEAAPINAPPSTD

TrEMBL top hitse value%identityAlignment
A0A5A7TR51 Exopolygalacturonase-like2.2e-3867.77Show/hide
Query:  YPDSNLYFKDIEMVNVSNPIIIDQEYCPSNQCNKNLPSKIKISNVSFKNIRGTCVTPVVVKLVCSKDVACKGAEVIDIDLTYTESRGPITSQCVNVLNPI
        +P S+++F+DIEMVNVSNP+IIDQEYCP NQCN+ +PSKIKISNVSFKNIRGT  TPV VK+VCS+   C+G EV DIDLTY+ S GPI SQC NV  P+
Subjt:  YPDSNLYFKDIEMVNVSNPIIIDQEYCPSNQCNKNLPSKIKISNVSFKNIRGTCVTPVVVKLVCSKDVACKGAEVIDIDLTYTESRGPITSQCVNVLNPI

Query:  IVEKQNPPACAEAAPINAPPS
        I  KQNPP C E AP   P S
Subjt:  IVEKQNPPACAEAAPINAPPS

A0A5A7TRZ0 Exopolygalacturonase-like2.2e-3867.77Show/hide
Query:  YPDSNLYFKDIEMVNVSNPIIIDQEYCPSNQCNKNLPSKIKISNVSFKNIRGTCVTPVVVKLVCSKDVACKGAEVIDIDLTYTESRGPITSQCVNVLNPI
        +P S+++F+DIEMVNVSNP+IIDQEYCP NQCN+ +PSKIKISNVSFKNIRGT  TPV VK+VCS+   C+G EV DIDLTY+ S GPI SQC NV  P+
Subjt:  YPDSNLYFKDIEMVNVSNPIIIDQEYCPSNQCNKNLPSKIKISNVSFKNIRGTCVTPVVVKLVCSKDVACKGAEVIDIDLTYTESRGPITSQCVNVLNPI

Query:  IVEKQNPPACAEAAPINAPPS
        I  KQNPP C E AP   P S
Subjt:  IVEKQNPPACAEAAPINAPPS

A0A5D3BWP4 Exopolygalacturonase-like2.2e-3867.77Show/hide
Query:  YPDSNLYFKDIEMVNVSNPIIIDQEYCPSNQCNKNLPSKIKISNVSFKNIRGTCVTPVVVKLVCSKDVACKGAEVIDIDLTYTESRGPITSQCVNVLNPI
        +P S+++F+DIEMVNVSNP+IIDQEYCP NQCN+ +PSKIKISNVSFKNIRGT  TPV VK+VCS+   C+G EV DIDLTY+ S GPI SQC NV  P+
Subjt:  YPDSNLYFKDIEMVNVSNPIIIDQEYCPSNQCNKNLPSKIKISNVSFKNIRGTCVTPVVVKLVCSKDVACKGAEVIDIDLTYTESRGPITSQCVNVLNPI

Query:  IVEKQNPPACAEAAPINAPPS
        I  KQNPP C E AP   P S
Subjt:  IVEKQNPPACAEAAPINAPPS

A0A5D3DDK3 Exopolygalacturonase-like1.5e-3970.73Show/hide
Query:  YPDSNLYFKDIEMVNVSNPIIIDQEYCPSNQCNKNLPSKIKISNVSFKNIRGTCVTPVVVKLVCSKDVACKGAEVIDIDLTYTESRGPITSQCVNVLNPI
        Y  S+L+F+DIEMVNVSNPIIIDQEYCPSNQCNK +PSKIKI NVSFKNIRGT  TPV +K +CSKD+ C+  EV DI+L+YT ++G ITSQC NV+ PI
Subjt:  YPDSNLYFKDIEMVNVSNPIIIDQEYCPSNQCNKNLPSKIKISNVSFKNIRGTCVTPVVVKLVCSKDVACKGAEVIDIDLTYTESRGPITSQCVNVLNPI

Query:  IVEKQNPPACAEAAPINAPPSTD
        I  KQNP AC E APIN+ PSTD
Subjt:  IVEKQNPPACAEAAPINAPPSTD

A0A5D3DYI3 Exopolygalacturonase-like2.2e-3867.77Show/hide
Query:  YPDSNLYFKDIEMVNVSNPIIIDQEYCPSNQCNKNLPSKIKISNVSFKNIRGTCVTPVVVKLVCSKDVACKGAEVIDIDLTYTESRGPITSQCVNVLNPI
        +P S+++F+DIEMVNVSNP+IIDQEYCP NQCN+ +PSKIKISNVSFKNIRGT  TPV VK+VCS+   C+G EV DIDLTY+ S GPI SQC NV  P+
Subjt:  YPDSNLYFKDIEMVNVSNPIIIDQEYCPSNQCNKNLPSKIKISNVSFKNIRGTCVTPVVVKLVCSKDVACKGAEVIDIDLTYTESRGPITSQCVNVLNPI

Query:  IVEKQNPPACAEAAPINAPPS
        I  KQNPP C E AP   P S
Subjt:  IVEKQNPPACAEAAPINAPPS

SwissProt top hitse value%identityAlignment
P24548 Exopolygalacturonase (Fragment)2.4e-2646.97Show/hide
Query:  VLGSKHGQIRQVYPD------SNLYFKDIEMVNVSNPIIIDQEYCPSNQCNKNLPSKIKISNVSFKNIRGTCVTPVVVKLVCSKDVACKGAEVIDIDLTY
        + GS++G   + +P       S ++F+DI M +V  PI+IDQ YCP NQC   +PS +K+S +SFKNI+GT  T   VKLVCSK   C G E+ DIDLTY
Subjt:  VLGSKHGQIRQVYPD------SNLYFKDIEMVNVSNPIIIDQEYCPSNQCNKNLPSKIKISNVSFKNIRGTCVTPVVVKLVCSKDVACKGAEVIDIDLTY

Query:  TESRGPITSQCVNVLNPIIVEKQNPPACAEAA
        +   GP TS C N+  P I  KQ P  C+ +A
Subjt:  TESRGPITSQCVNVLNPIIVEKQNPPACAEAA

P35337 Polygalacturonase2.3e-2452.34Show/hide
Query:  SNLYFKDIEMVNVSNPIIIDQEYCPSNQCNKNLPSKIKISNVSFKNIRGTCVTPVVVKLVCSKDVACKGAEVIDIDLTYTESRGPITSQCVNVLNPIIVE
        + ++F+DI +  VSNPI+IDQEYCP NQCNKN PS IK+ +++F+NIRGT      VKL+CSK   C+  E+ DI++ YT   GP T +C NV  P +V 
Subjt:  SNLYFKDIEMVNVSNPIIIDQEYCPSNQCNKNLPSKIKISNVSFKNIRGTCVTPVVVKLVCSKDVACKGAEVIDIDLTYTESRGPITSQCVNVLNPIIVE

Query:  KQNPPAC
         QNP AC
Subjt:  KQNPPAC

Q05967 Polygalacturonase1.1e-2653.15Show/hide
Query:  SNLYFKDIEMVNVSNPIIIDQEYCPSNQCNKNLPSKIKISNVSFKNIRGTCVTPVVVKLVCSKDVACKGAEVIDIDLTYTESRGPITSQCVNVLNPIIVE
        ++++F+DI + NVSNP++IDQ YCP N+CNK+LPS++KIS VSF+NI+GT  T   V L+ SK V C+G EV DID+TY+   GP  S C N+  P +  
Subjt:  SNLYFKDIEMVNVSNPIIIDQEYCPSNQCNKNLPSKIKISNVSFKNIRGTCVTPVVVKLVCSKDVACKGAEVIDIDLTYTESRGPITSQCVNVLNPIIVE

Query:  KQNPPACAEAA
        KQNPP C  +A
Subjt:  KQNPPACAEAA

Q39766 Polygalacturonase1.0e-2450Show/hide
Query:  SNLYFKDIEMVNVSNPIIIDQEYCPSNQCNKNLPSKIKISNVSFKNIRGTCVTPVVVKLVCSKDVACKGAEVIDIDLTYTESRGPITSQCVNVLNPIIVE
        S ++F+DI M NVS+PI+IDQ+YCP N+C KN  SK+K+SN+SFKNIRGT   P  +K +CS    C+  E+ DID+ +  +  P TSQC+NV  PI + 
Subjt:  SNLYFKDIEMVNVSNPIIIDQEYCPSNQCNKNLPSKIKISNVSFKNIRGTCVTPVVVKLVCSKDVACKGAEVIDIDLTYTESRGPITSQCVNVLNPIIVE

Query:  KQNPPACAEAAP
        K NP  C+   P
Subjt:  KQNPPACAEAAP

W8P8Q3 Probable galacturan 1,4-alpha-galacturonidase SALK61.2e-2552.59Show/hide
Query:  SNLYFKDIEMVNVSNPIIIDQEYCPSNQCNKNLPSKIKISNVSFKNIRGTCVTPVVVKLVCSKDVACKGAEVIDIDLTYTESRGPITSQCVNVLNPIIVE
        S+L+F+DI + NV NP+IIDQEYCP N C +  PSK+K+S +SFKN+ G   +  VVKL+CS  V C G E+ DIDLT+    G   SQC NV  PI+  
Subjt:  SNLYFKDIEMVNVSNPIIIDQEYCPSNQCNKNLPSKIKISNVSFKNIRGTCVTPVVVKLVCSKDVACKGAEVIDIDLTYTESRGPITSQCVNVLNPIIVE

Query:  KQNPPACAEAAPINAP
        KQNP AC   A   AP
Subjt:  KQNPPACAEAAPINAP

Arabidopsis top hitse value%identityAlignment
AT3G07820.1 Pectin lyase-like superfamily protein9.5e-2652.25Show/hide
Query:  SNLYFKDIEMVNVSNPIIIDQEYCPSNQCNKNLPSKIKISNVSFKNIRGTCVTPVVVKLVCSKDVACKGAEVIDIDLTYTESRGPITSQCVNVLNPIIVE
        S+++F+DI + +VSNPI+IDQEYCP NQCNK   S IK+ N+SFKNIRGT      VKL+CSK   C+  E+ DID+ Y  + GP T  C NV +P I+ 
Subjt:  SNLYFKDIEMVNVSNPIIIDQEYCPSNQCNKNLPSKIKISNVSFKNIRGTCVTPVVVKLVCSKDVACKGAEVIDIDLTYTESRGPITSQCVNVLNPIIVE

Query:  KQNPPACAEAA
         Q+P AC+  A
Subjt:  KQNPPACAEAA

AT3G07830.1 Pectin lyase-like superfamily protein1.4e-2450.43Show/hide
Query:  SNLYFKDIEMVNVSNPIIIDQEYCPSNQCNKNLPSKIKISNVSFKNIRGTCVTPVVVKLVCSKDVACKGAEVIDIDLTYTESRGPITSQCVNVLNPIIVE
        SN++F++I + NVSNPI+IDQEYCP NQCNK   S IK++N+SF+ IRGT      VKL+CSK   C+  +V DI++ YT + GP T  C NV  P +V 
Subjt:  SNLYFKDIEMVNVSNPIIIDQEYCPSNQCNKNLPSKIKISNVSFKNIRGTCVTPVVVKLVCSKDVACKGAEVIDIDLTYTESRGPITSQCVNVLNPIIVE

Query:  KQNPPACAEAAPINAPP
         Q P AC      N PP
Subjt:  KQNPPACAEAAPINAPP

AT3G07840.1 Pectin lyase-like superfamily protein1.8e-2452.78Show/hide
Query:  SNLYFKDIEMVNVSNPIIIDQEYCPSNQCNKNLPSKIKISNVSFKNIRGTCVTPVVVKLVCSKDVACKGAEVIDIDLTYTESRGPITSQCVNVLNPIIVE
        S ++F++I + NVSNPI+IDQEYCP NQCNK  PS IK+ ++SFKNIRGT      VKL+CSK   C   E+ +I+L Y  + GP T  C NV +P +V 
Subjt:  SNLYFKDIEMVNVSNPIIIDQEYCPSNQCNKNLPSKIKISNVSFKNIRGTCVTPVVVKLVCSKDVACKGAEVIDIDLTYTESRGPITSQCVNVLNPIIVE

Query:  KQNPPACA
         QNP AC+
Subjt:  KQNPPACA

AT3G14040.1 Pectin lyase-like superfamily protein1.4e-2449.55Show/hide
Query:  SNLYFKDIEMVNVSNPIIIDQEYCPSNQCNKNLPSKIKISNVSFKNIRGTCVTPVVVKLVCSKDVACKGAEVIDIDLTYTESRGPITSQCVNVLNPIIVE
        SN+ F+DI M NVS P++IDQEYCP   C   +PSK+K+S+V+ KNI+GT  T V VKL+CSK V C    + DI+L +    GP  S C N+  PI+  
Subjt:  SNLYFKDIEMVNVSNPIIIDQEYCPSNQCNKNLPSKIKISNVSFKNIRGTCVTPVVVKLVCSKDVACKGAEVIDIDLTYTESRGPITSQCVNVLNPIIVE

Query:  KQNPPACAEAA
        K  P AC E A
Subjt:  KQNPPACAEAA

AT5G48140.1 Pectin lyase-like superfamily protein5.0e-2752.14Show/hide
Query:  SNLYFKDIEMVNVSNPIIIDQEYCPSNQCNKNLPSKIKISNVSFKNIRGTCVTPVVVKLVCSKDVACKGAEVIDIDLTYTESRGPITSQCVNVLNPIIVE
        S+++F++I + NVSNPI+IDQEYCP NQCNK  PS IK++N+SFK IRGT      VKL+CSK   C+  EV D+++ YT + GP T QC NV +P +V 
Subjt:  SNLYFKDIEMVNVSNPIIIDQEYCPSNQCNKNLPSKIKISNVSFKNIRGTCVTPVVVKLVCSKDVACKGAEVIDIDLTYTESRGPITSQCVNVLNPIIVE

Query:  KQNPPACAEAAPINAPP
         Q P AC  ++P+  PP
Subjt:  KQNPPACAEAAPINAPP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTTAGGATCAAAACATGGTCAGATTCGGCAGGTGTATCCAGACTCTAACTTGTATTTTAAAGATATTGAAATGGTTAATGTCAGCAATCCTATCATAATAGACCA
AGAATATTGTCCATCGAATCAATGCAACAAGAACCTTCCATCAAAAATTAAGATCAGCAATGTGAGTTTCAAGAATATCAGAGGCACTTGTGTTACTCCCGTGGTAGTTA
AGCTTGTTTGTAGCAAAGATGTAGCATGCAAAGGTGCGGAAGTTATTGATATTGACCTAACTTACACCGAAAGCCGAGGACCAATTACGTCTCAATGTGTAAATGTACTA
AATCCCATCATTGTTGAAAAACAAAACCCTCCTGCATGTGCTGAAGCTGCTCCTATTAATGCTCCTCCATCAACCGACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGTTAGGATCAAAACATGGTCAGATTCGGCAGGTGTATCCAGACTCTAACTTGTATTTTAAAGATATTGAAATGGTTAATGTCAGCAATCCTATCATAATAGACCA
AGAATATTGTCCATCGAATCAATGCAACAAGAACCTTCCATCAAAAATTAAGATCAGCAATGTGAGTTTCAAGAATATCAGAGGCACTTGTGTTACTCCCGTGGTAGTTA
AGCTTGTTTGTAGCAAAGATGTAGCATGCAAAGGTGCGGAAGTTATTGATATTGACCTAACTTACACCGAAAGCCGAGGACCAATTACGTCTCAATGTGTAAATGTACTA
AATCCCATCATTGTTGAAAAACAAAACCCTCCTGCATGTGCTGAAGCTGCTCCTATTAATGCTCCTCCATCAACCGACTAA
Protein sequenceShow/hide protein sequence
MVLGSKHGQIRQVYPDSNLYFKDIEMVNVSNPIIIDQEYCPSNQCNKNLPSKIKISNVSFKNIRGTCVTPVVVKLVCSKDVACKGAEVIDIDLTYTESRGPITSQCVNVL
NPIIVEKQNPPACAEAAPINAPPSTD