CuGenDBv2

Gene ID	CaUC02G035130
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Nuclear transcription factor Y subunit B-3
Genome location	Ciama_Chr02:13839377..13840090
RNA-Seq Expression	CaUC02G035130
Synteny	CaUC02G035130
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008464163.1 PREDICTED: uncharacterized protein LOC103502111 [Cucumis melo]

6.4e-88

79.92

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Query:  MKLKITVEDQMAN-LPLRTPLSWFIALTSFLLCLGFLGFRFFSSFLLTSIALIMSMLYFSISKRNSLPVQKFVQEEEEEEEEEEEEEEEEEEEDQKELNF
        MKLKI VE+QMAN  PLR PLSWF+ LT FL CLGFLGFRFFSSFL TSIALIMSMLYFSISKR+SLP+QKFVQ           E+EEEEEEDQKEL F
Subjt:  MKLKITVEDQMAN-LPLRTPLSWFIALTSFLLCLGFLGFRFFSSFLLTSIALIMSMLYFSISKRNSLPVQKFVQEEEEEEEEEEEEEEEEEEEDQKELNF

Query:  LSDQLKFSSASGPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEESLIEIALPTGHYVSHKFD------DEDDMSFRFQKL
         SD LK SSAS PTT DLLSESECADDNFTTTEESEVEWPYFD R Y A++  RSDDGSISDEESLIEIALPTGHYVS KFD      DEDD  FR+QKL
Subjt:  LSDQLKFSSASGPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEESLIEIALPTGHYVSHKFD------DEDDMSFRFQKL

Query:  SDFQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA
        SDFQ KKNLVEVLAE+NDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  SDFQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA

XP_011656887.2 uncharacterized protein LOC105435780 [Cucumis sativus]

2.7e-86

79.75

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Query:  MKLKITVEDQMAN-LPLRTPLSWFIALTSFLLCLGFLGFRFFSSFLLTSIALIMSMLYFSISKRNSLPVQKFVQEEEEEEEEEEEEEEEEEEEDQKELNF
        MKLKI VE+QMAN LPLR P SW I LT FLLCLGF GFRFFSSFL TSIALIMSMLYFSISKRNSLP++KFVQ          EEEEEEEEEDQK+L F
Subjt:  MKLKITVEDQMAN-LPLRTPLSWFIALTSFLLCLGFLGFRFFSSFLLTSIALIMSMLYFSISKRNSLPVQKFVQEEEEEEEEEEEEEEEEEEEDQKELNF

Query:  LSDQLKFSSASGPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEESLIEIALPTGHYVSHKFD----DEDDMSFRFQKLSD
         SD LK SSAS PT  DLLSESECADDNFTTTEESEVEWPYFD R    +N  RSDDGSISDEESLIEIALPTGHYVS KFD    DEDD+SFR+QKL+D
Subjt:  LSDQLKFSSASGPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEESLIEIALPTGHYVSHKFD----DEDDMSFRFQKLSD

Query:  FQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA
        FQ +KNLVEVLAE+NDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  FQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA

XP_022140584.1 uncharacterized protein LOC111011203 [Momordica charantia]

3.4e-73

74.07

Show/hide

Query:  MKLKITVEDQMANLPLRTPLSWFIALTSFLLCLGFLGFRFFSSFLLTSIALIMSMLYFSISKRNSLPVQKFVQEEEEEEEEEEEEEEEEEEEDQKELNFL
        MKLKI VEDQMA  PLR PLSWF   +  LLCLGFLG RF S+F LTS  LIMSMLYF+ISKRNSLP+   +  E+  EEEEEE E         E++F 
Subjt:  MKLKITVEDQMANLPLRTPLSWFIALTSFLLCLGFLGFRFFSSFLLTSIALIMSMLYFSISKRNSLPVQKFVQEEEEEEEEEEEEEEEEEEEDQKELNFL

Query:  SDQLKFSSASGPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEESLIEIALPTGHYVSHKFD------DEDDMSFRFQKLS
        SDQ KFSSAS P TGDLLSESECADDNFTTTEESEVEWP+ DR   TA N DRS DGSISDEESLIEIALPTGHYVSHKFD      DEDDMSF  QKLS
Subjt:  SDQLKFSSASGPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEESLIEIALPTGHYVSHKFD------DEDDMSFRFQKLS

Query:  DFQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA
        DFQ +KNLVE+LAE+NDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  DFQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA

XP_022985724.1 uncharacterized protein LOC111483694 [Cucurbita maxima]

8.4e-72

72.65

Show/hide

Query:  MKLKITVEDQMANLPLRTPLSWFIALTSFLLCLGFLGF-RFFSSFLLTSIALIMSMLYFSISKRNSLPVQKFVQEEEEEEEEEEEEEEEEEEEDQKELNF
        MKLKIT EDQMA  PL+ PLS FI LT FLL L FLGF RFFSSFLLT  ALIMSMLYFSISK N  P+ K +  +++EE              QKEL F
Subjt:  MKLKITVEDQMANLPLRTPLSWFIALTSFLLCLGFLGF-RFFSSFLLTSIALIMSMLYFSISKRNSLPVQKFVQEEEEEEEEEEEEEEEEEEEDQKELNF

Query:  L-SDQLKFSSASGPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEESLIEIALPTGHYVSHKFDDE---DDMSFRFQKLSD
        L SD   FSSAS PT  DLLSESECADDNFTTTEESEVEWP+FDR   TAKN  RSDDGSISDEESLIEIALPTGHYV+HK DD+   DDMSF FQKLS+
Subjt:  L-SDQLKFSSASGPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEESLIEIALPTGHYVSHKFDDE---DDMSFRFQKLSD

Query:  FQ---MKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA
        FQ    KKNLVE+LAE+NDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  FQ---MKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA

XP_038902685.1 uncharacterized protein LOC120089322 [Benincasa hispida]

6.4e-88

83.84

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Query:  LPLRTPLSWFIALTSFLLCLGFLGFRFFSSFLLTSIALIMSMLYFSISKRNSLPVQKFVQEEEEEEEEEEEEEEEEEEEDQKELNFLSDQLKFSSASGPT
        LPLRTPLSWFIALT FLLCLGFLGFR FSSFLLTSIALIMSMLYFSISKRNSLP+QKFVQ          + +EEEEEEDQK+L F SD LK SS S PT
Subjt:  LPLRTPLSWFIALTSFLLCLGFLGFRFFSSFLLTSIALIMSMLYFSISKRNSLPVQKFVQEEEEEEEEEEEEEEEEEEEDQKELNFLSDQLKFSSASGPT

Query:  TGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEESLIEIALPTGHYVSHKFD-----DEDDMSFRFQKLSDFQMKKNLVEVLAE
        TGDLLSESECADDNFTTTEESEVEWPYFD RSY   N DRSDDGSISDEESLIEIALPTGHYVSHKFD     DED MSFR+QKLSDFQ KKNLVEVLAE
Subjt:  TGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEESLIEIALPTGHYVSHKFD-----DEDDMSFRFQKLSDFQMKKNLVEVLAE

Query:  MNDINEEENLIEIDISMGSIKYSRFEIEA
        +NDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  MNDINEEENLIEIDISMGSIKYSRFEIEA

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CMD0 uncharacterized protein LOC103502111

3.1e-88

79.92

Show/hide

Query:  MKLKITVEDQMAN-LPLRTPLSWFIALTSFLLCLGFLGFRFFSSFLLTSIALIMSMLYFSISKRNSLPVQKFVQEEEEEEEEEEEEEEEEEEEDQKELNF
        MKLKI VE+QMAN  PLR PLSWF+ LT FL CLGFLGFRFFSSFL TSIALIMSMLYFSISKR+SLP+QKFVQ           E+EEEEEEDQKEL F
Subjt:  MKLKITVEDQMAN-LPLRTPLSWFIALTSFLLCLGFLGFRFFSSFLLTSIALIMSMLYFSISKRNSLPVQKFVQEEEEEEEEEEEEEEEEEEEDQKELNF

Query:  LSDQLKFSSASGPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEESLIEIALPTGHYVSHKFD------DEDDMSFRFQKL
         SD LK SSAS PTT DLLSESECADDNFTTTEESEVEWPYFD R Y A++  RSDDGSISDEESLIEIALPTGHYVS KFD      DEDD  FR+QKL
Subjt:  LSDQLKFSSASGPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEESLIEIALPTGHYVSHKFD------DEDDMSFRFQKL

Query:  SDFQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA
        SDFQ KKNLVEVLAE+NDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  SDFQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA

A0A5A7UY43 Uncharacterized protein

4.2e-69

83.25

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Query:  MSMLYFSISKRNSLPVQKFVQEEEEEEEEEEEEEEEEEEEDQKELNFLSDQLKFSSASGPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTD
        MSMLYFSISKR+SLP+QKFVQ    E+EEEEEEEEEEEEEDQKEL F SD LK SSAS PTT DLLSESECADDNFTTTEESEVEWPYFD R Y A++  
Subjt:  MSMLYFSISKRNSLPVQKFVQEEEEEEEEEEEEEEEEEEEDQKELNFLSDQLKFSSASGPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTD

Query:  RSDDGSISDEESLIEIALPTGHYVSHKFD------DEDDMSFRFQKLSDFQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA
        RSDDGSISDEESLIEIALPTGHYVS KFD      DEDD  FR+QKLSDFQ KKNLVEVLAE+NDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  RSDDGSISDEESLIEIALPTGHYVSHKFD------DEDDMSFRFQKLSDFQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA

A0A6J1CG35 uncharacterized protein LOC111011203

1.6e-73

74.07

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Query:  MKLKITVEDQMANLPLRTPLSWFIALTSFLLCLGFLGFRFFSSFLLTSIALIMSMLYFSISKRNSLPVQKFVQEEEEEEEEEEEEEEEEEEEDQKELNFL
        MKLKI VEDQMA  PLR PLSWF   +  LLCLGFLG RF S+F LTS  LIMSMLYF+ISKRNSLP+   +  E+  EEEEEE E         E++F 
Subjt:  MKLKITVEDQMANLPLRTPLSWFIALTSFLLCLGFLGFRFFSSFLLTSIALIMSMLYFSISKRNSLPVQKFVQEEEEEEEEEEEEEEEEEEEDQKELNFL

Query:  SDQLKFSSASGPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEESLIEIALPTGHYVSHKFD------DEDDMSFRFQKLS
        SDQ KFSSAS P TGDLLSESECADDNFTTTEESEVEWP+ DR   TA N DRS DGSISDEESLIEIALPTGHYVSHKFD      DEDDMSF  QKLS
Subjt:  SDQLKFSSASGPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEESLIEIALPTGHYVSHKFD------DEDDMSFRFQKLS

Query:  DFQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA
        DFQ +KNLVE+LAE+NDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  DFQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA

A0A6J1FUA8 uncharacterized protein LOC111448485

5.3e-72

71.66

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Query:  MKLKITVEDQMANLPLRTPLSWFIALTSFLLCLGFLGF-RFFSSFLLTSIALIMSMLYFSISKRNSLPVQKFVQEEEEEEEEEEEEEEEEEEEDQKELNF
        MKLKIT EDQMA  P++ PLS FI LT FLL LGFLGF RFFSSF+LT  ALIMSMLYFSISK N  P+ K + +++++E              QKEL F
Subjt:  MKLKITVEDQMANLPLRTPLSWFIALTSFLLCLGFLGF-RFFSSFLLTSIALIMSMLYFSISKRNSLPVQKFVQEEEEEEEEEEEEEEEEEEEDQKELNF

Query:  L-SDQLKFSSASGPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEESLIEIALPTGHYVSHKF-----DDEDDMSFRFQKL
        L SD   FSSAS PT  DLLSESECADDNFTTTEESEVEWP+FDR   TA N  RSDDGSISDEESLIEIALPTGHYVSHK      DDEDDMSF FQKL
Subjt:  L-SDQLKFSSASGPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEESLIEIALPTGHYVSHKF-----DDEDDMSFRFQKL

Query:  SDFQ---MKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA
        S+FQ    KKNLVE+LAE+NDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  SDFQ---MKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA

A0A6J1JE34 uncharacterized protein LOC111483694

4.0e-72

72.65

Show/hide

Query:  MKLKITVEDQMANLPLRTPLSWFIALTSFLLCLGFLGF-RFFSSFLLTSIALIMSMLYFSISKRNSLPVQKFVQEEEEEEEEEEEEEEEEEEEDQKELNF
        MKLKIT EDQMA  PL+ PLS FI LT FLL L FLGF RFFSSFLLT  ALIMSMLYFSISK N  P+ K +  +++EE              QKEL F
Subjt:  MKLKITVEDQMANLPLRTPLSWFIALTSFLLCLGFLGF-RFFSSFLLTSIALIMSMLYFSISKRNSLPVQKFVQEEEEEEEEEEEEEEEEEEEDQKELNF

Query:  L-SDQLKFSSASGPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEESLIEIALPTGHYVSHKFDDE---DDMSFRFQKLSD
        L SD   FSSAS PT  DLLSESECADDNFTTTEESEVEWP+FDR   TAKN  RSDDGSISDEESLIEIALPTGHYV+HK DD+   DDMSF FQKLS+
Subjt:  L-SDQLKFSSASGPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEESLIEIALPTGHYVSHKFDDE---DDMSFRFQKLSD

Query:  FQ---MKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA
        FQ    KKNLVE+LAE+NDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  FQ---MKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G04480.1 unknown protein

5.9e-15

33.48

Show/hide

Query:  MANLPLRTPLSWFIALTSFLLCLGFLGFRFFSSFLLTSIALIMSMLYFSISKRNSLPVQKFVQEEEEEEEEEEEEEEEEEEEDQKELNFLSDQLKFSSAS
        +A++ L+ P SW   L   LL +  LG RF    LLT  AL  S  +F IS  +S      +Q  ++++++E               ++++         
Subjt:  MANLPLRTPLSWFIALTSFLLCLGFLGFRFFSSFLLTSIALIMSMLYFSISKRNSLPVQKFVQEEEEEEEEEEEEEEEEEEEDQKELNFLSDQLKFSSAS

Query:  GPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEESLIEIALPTGHYVSHKFDDEDDMSFRFQKLSDFQMKKNLVEVLAEMN
           T D+  +SE   +N   T E +                   DDG+I D+ESLIE++LP+GHY+ H ++   +  +   K+ DF+    L ++L E+N
Subjt:  GPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEESLIEIALPTGHYVSHKFDDEDDMSFRFQKLSDFQMKKNLVEVLAEMN

Query:  DINEEENLIEIDISMGSIKYSRFEIEA
        D  EE+NLIEIDIS+GSIKYSRFEI+A
Subjt:  DINEEENLIEIDISMGSIKYSRFEIEA

AT5G35870.1 unknown protein

7.2e-13

33.19

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Query:  LPLRTPLSWFIALTSFLLCLGFLGFRFFSSFLLTSIALIMSMLYF--SISKRNSLPVQKFVQEEEEEEEEEEEEEEEEEEEDQKELNFLSDQLKFSSASG
        L  + P+SW   L   LL +  LG   FS  +LTS AL  S  +F  SI K NS  VQ   Q+                           D L  +  S 
Subjt:  LPLRTPLSWFIALTSFLLCLGFLGFRFFSSFLLTSIALIMSMLYF--SISKRNSLPVQKFVQEEEEEEEEEEEEEEEEEEEDQKELNFLSDQLKFSSASG

Query:  PTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEESLIEIALPTGHYVSHKFD---DEDDMSFRFQKLSDFQMKKNLVEVLAE
         TT D++                              KN D  DDG+I DEESLIE++LP+GHY+ H +     + D    +  + DF+    L+++ AE
Subjt:  PTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEESLIEIALPTGHYVSHKFD---DEDDMSFRFQKLSDFQMKKNLVEVLAE

Query:  MNDINEEENLIEIDISMGSIKYSRFEIEA
             E++NLIEIDIS+GSIK SRF+I+A
Subjt:  MNDINEEENLIEIDISMGSIKYSRFEIEA

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAAGTTGAAAATCACAGTTGAGGATCAAATGGCCAATCTTCCTTTGAGAACCCCATTATCATGGTTTATTGCTCTAACTTCTTTTCTCCTCTGTTTGGGTTTT
TTGGGATTTAGATTCTTCTCATCTTTTTTACTTACTTCCATAGCTCTGATTATGTCTATGCTCTATTTTTCAATCTCCAAAAGAAATTCACTTCCTGTACAGAAA
TTTGTACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATCAGAAAGAACTGAACTTTCTTTCTGATCAATTGAAA
TTCTCGTCGGCGTCAGGTCCGACGACCGGAGATTTGCTGTCGGAAAGTGAATGTGCCGATGATAATTTCACGACCACAGAGGAATCCGAAGTGGAGTGGCCGTAT
TTTGACCGCCGGTCGTATACAGCGAAAAACACGGACCGGTCTGACGACGGTTCGATTTCCGATGAGGAAAGTTTGATCGAAATCGCTCTCCCGACCGGACATTAC
GTCAGCCATAAGTTCGATGACGAGGACGACATGTCGTTTCGTTTCCAGAAACTGTCGGATTTTCAGATGAAGAAGAATCTTGTGGAGGTGTTGGCTGAAATGAAC
GACATCAATGAGGAGGAGAATTTGATTGAGATCGACATATCGATGGGCTCCATTAAATATTCAAGGTTTGAAATTGAAGCTTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MKLKITVEDQMANLPLRTPLSWFIALTSFLLCLGFLGFRFFSSFLLTSIALIMSMLYFSISKRNSLPVQKFVQEEEEEEEEEEEEEEEEEEEDQKELNFLSDQLK
FSSASGPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEESLIEIALPTGHYVSHKFDDEDDMSFRFQKLSDFQMKKNLVEVLAEMN
DINEEENLIEIDISMGSIKYSRFEIEA

CaUC02G035130 (gene) of Watermelon (USVL246-FR2) v1 genome