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CaUC02G036060 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC02G036060
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionflowering time control protein FPA
Genome locationCiama_Chr02:18620471..18621717
RNA-Seq ExpressionCaUC02G036060
SyntenyCaUC02G036060
Gene Ontology termsGO:0110165 - cellular anatomical structure (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036655.1 flowering time control protein FPA [Cucumis melo var. makuwa]1.1e-4992.59Show/hide
Query:  SGRVDGGRDRYRKDYTSRYDEKSQSGHSNNSNPPSRHLWVGNLSHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFALGGNP
        SGRVDGGRDRYRKDY SR+DEK QSGHSN+SNPPSRHLWVGNL+HVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGF+LGGNP
Subjt:  SGRVDGGRDRYRKDYTSRYDEKSQSGHSNNSNPPSRHLWVGNLSHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFALGGNP

Query:  IRIEFAKA
        I+IEF KA
Subjt:  IRIEFAKA

KAG7035027.1 Flowering time control protein FPA, partial [Cucurbita argyrosperma subsp. argyrosperma]1.6e-4889.81Show/hide
Query:  SGRVDGGRDRYRKDYTSRYDEKSQSGHSNNSNPPSRHLWVGNLSHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFALGGNP
        SGR DGGRDRYRKDY+SRYDEKSQSGHSN+SNPPSRHLW+GNLSHVVVERD++R FSQFGELDSIAFQPSRSYAFINF+RDEDA+AAMRELQGFAL GNP
Subjt:  SGRVDGGRDRYRKDYTSRYDEKSQSGHSNNSNPPSRHLWVGNLSHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFALGGNP

Query:  IRIEFAKA
        +RIEFAKA
Subjt:  IRIEFAKA

XP_004140066.1 flowering time control protein FPA isoform X1 [Cucumis sativus]2.9e-5092.59Show/hide
Query:  SGRVDGGRDRYRKDYTSRYDEKSQSGHSNNSNPPSRHLWVGNLSHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFALGGNP
        SGRVDGGRDRYRKDYTSR+DEK QSGHSN+SNPPSRHLWVGNL+HVVVERDLSRYFSQFGELDSIAFQPSRSYAF+NFKRDEDAMAAMRELQGF+LGGNP
Subjt:  SGRVDGGRDRYRKDYTSRYDEKSQSGHSNNSNPPSRHLWVGNLSHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFALGGNP

Query:  IRIEFAKA
        I+IEF KA
Subjt:  IRIEFAKA

XP_008448142.1 PREDICTED: flowering time control protein FPA [Cucumis melo]1.1e-4992.59Show/hide
Query:  SGRVDGGRDRYRKDYTSRYDEKSQSGHSNNSNPPSRHLWVGNLSHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFALGGNP
        SGRVDGGRDRYRKDY SR+DEK QSGHSN+SNPPSRHLWVGNL+HVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGF+LGGNP
Subjt:  SGRVDGGRDRYRKDYTSRYDEKSQSGHSNNSNPPSRHLWVGNLSHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFALGGNP

Query:  IRIEFAKA
        I+IEF KA
Subjt:  IRIEFAKA

XP_038901035.1 flowering time control protein FPA [Benincasa hispida]2.2e-5095.41Show/hide
Query:  SGRVDGGRDRYRKDYTSRYDEKSQSGHSN-NSNPPSRHLWVGNLSHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFALGGN
        SGRVDGGRDRYRKDYTSRYD+KSQSGHSN +SNPPSRHLWVGNL+HVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFALGGN
Subjt:  SGRVDGGRDRYRKDYTSRYDEKSQSGHSN-NSNPPSRHLWVGNLSHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFALGGN

Query:  PIRIEFAKA
        PIRIEF KA
Subjt:  PIRIEFAKA

TrEMBL top hitse value%identityAlignment
A0A0A0KA84 Uncharacterized protein1.4e-5092.59Show/hide
Query:  SGRVDGGRDRYRKDYTSRYDEKSQSGHSNNSNPPSRHLWVGNLSHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFALGGNP
        SGRVDGGRDRYRKDYTSR+DEK QSGHSN+SNPPSRHLWVGNL+HVVVERDLSRYFSQFGELDSIAFQPSRSYAF+NFKRDEDAMAAMRELQGF+LGGNP
Subjt:  SGRVDGGRDRYRKDYTSRYDEKSQSGHSNNSNPPSRHLWVGNLSHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFALGGNP

Query:  IRIEFAKA
        I+IEF KA
Subjt:  IRIEFAKA

A0A1S3BJL6 flowering time control protein FPA5.3e-5092.59Show/hide
Query:  SGRVDGGRDRYRKDYTSRYDEKSQSGHSNNSNPPSRHLWVGNLSHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFALGGNP
        SGRVDGGRDRYRKDY SR+DEK QSGHSN+SNPPSRHLWVGNL+HVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGF+LGGNP
Subjt:  SGRVDGGRDRYRKDYTSRYDEKSQSGHSNNSNPPSRHLWVGNLSHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFALGGNP

Query:  IRIEFAKA
        I+IEF KA
Subjt:  IRIEFAKA

A0A5A7T5C2 Flowering time control protein FPA5.3e-5092.59Show/hide
Query:  SGRVDGGRDRYRKDYTSRYDEKSQSGHSNNSNPPSRHLWVGNLSHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFALGGNP
        SGRVDGGRDRYRKDY SR+DEK QSGHSN+SNPPSRHLWVGNL+HVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGF+LGGNP
Subjt:  SGRVDGGRDRYRKDYTSRYDEKSQSGHSNNSNPPSRHLWVGNLSHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFALGGNP

Query:  IRIEFAKA
        I+IEF KA
Subjt:  IRIEFAKA

A0A5D3BPF5 Flowering time control protein FPA5.3e-5092.59Show/hide
Query:  SGRVDGGRDRYRKDYTSRYDEKSQSGHSNNSNPPSRHLWVGNLSHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFALGGNP
        SGRVDGGRDRYRKDY SR+DEK QSGHSN+SNPPSRHLWVGNL+HVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGF+LGGNP
Subjt:  SGRVDGGRDRYRKDYTSRYDEKSQSGHSNNSNPPSRHLWVGNLSHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFALGGNP

Query:  IRIEFAKA
        I+IEF KA
Subjt:  IRIEFAKA

A0A6J1G624 flowering time control protein FPA-like isoform X17.7e-4989.81Show/hide
Query:  SGRVDGGRDRYRKDYTSRYDEKSQSGHSNNSNPPSRHLWVGNLSHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFALGGNP
        SGR DGGRDRYRKDY+SRYDEKSQSGHSN+SNPPSRHLW+GNLSHVVVERD++R FSQFGELDSIAFQPSRSYAFINF+RDEDA+AAMRELQGFAL GNP
Subjt:  SGRVDGGRDRYRKDYTSRYDEKSQSGHSNNSNPPSRHLWVGNLSHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFALGGNP

Query:  IRIEFAKA
        +RIEFAKA
Subjt:  IRIEFAKA

SwissProt top hitse value%identityAlignment
O60506 Heterogeneous nuclear ribonucleoprotein Q1.6e-0642.86Show/hide
Query:  LWVGNLSHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFALGGNPIRIEFAK
        L+V NL++ V E  L + FSQFG+L+ +  +  + YAFI+F   + A+ AM E+ G  L G  I I FAK
Subjt:  LWVGNLSHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFALGGNPIRIEFAK

Q62504 Msx2-interacting protein5.4e-0732.47Show/hide
Query:  PSRHLWVGNLSHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFALGGNPIRIEFAKAVS
        P+  +W+  LS  V ++ L+R+F ++G +  + F   +  A + +   EDA AA++E +G  +GGN I+++FA   S
Subjt:  PSRHLWVGNLSHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFALGGNPIRIEFAKAVS

Q7TMK9 Heterogeneous nuclear ribonucleoprotein Q1.6e-0642.86Show/hide
Query:  LWVGNLSHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFALGGNPIRIEFAK
        L+V NL++ V E  L + FSQFG+L+ +  +  + YAFI+F   + A+ AM E+ G  L G  I I FAK
Subjt:  LWVGNLSHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFALGGNPIRIEFAK

Q7TP47 Heterogeneous nuclear ribonucleoprotein Q1.6e-0642.86Show/hide
Query:  LWVGNLSHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFALGGNPIRIEFAK
        L+V NL++ V E  L + FSQFG+L+ +  +  + YAFI+F   + A+ AM E+ G  L G  I I FAK
Subjt:  LWVGNLSHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFALGGNPIRIEFAK

Q8LPQ9 Flowering time control protein FPA2.3e-1040Show/hide
Query:  SNNSNPPSRHLWVGNLSHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFALGGNPIRIEFAK
        +++S   S +LWVG+L+    E DL+  F ++G++D I    SR +AFI ++  E+A+AA   LQG  L G+ I+IE+A+
Subjt:  SNNSNPPSRHLWVGNLSHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFALGGNPIRIEFAK

Arabidopsis top hitse value%identityAlignment
AT2G43410.1 RNA binding1.7e-1140Show/hide
Query:  SNNSNPPSRHLWVGNLSHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFALGGNPIRIEFAK
        +++S   S +LWVG+L+    E DL+  F ++G++D I    SR +AFI ++  E+A+AA   LQG  L G+ I+IE+A+
Subjt:  SNNSNPPSRHLWVGNLSHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFALGGNPIRIEFAK

AT2G43410.2 RNA binding1.7e-1140Show/hide
Query:  SNNSNPPSRHLWVGNLSHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFALGGNPIRIEFAK
        +++S   S +LWVG+L+    E DL+  F ++G++D I    SR +AFI ++  E+A+AA   LQG  L G+ I+IE+A+
Subjt:  SNNSNPPSRHLWVGNLSHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFALGGNPIRIEFAK

AT2G43410.3 RNA binding1.7e-1140Show/hide
Query:  SNNSNPPSRHLWVGNLSHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFALGGNPIRIEFAK
        +++S   S +LWVG+L+    E DL+  F ++G++D I    SR +AFI ++  E+A+AA   LQG  L G+ I+IE+A+
Subjt:  SNNSNPPSRHLWVGNLSHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFALGGNPIRIEFAK

AT2G43410.4 RNA binding1.7e-1140Show/hide
Query:  SNNSNPPSRHLWVGNLSHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFALGGNPIRIEFAK
        +++S   S +LWVG+L+    E DL+  F ++G++D I    SR +AFI ++  E+A+AA   LQG  L G+ I+IE+A+
Subjt:  SNNSNPPSRHLWVGNLSHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFALGGNPIRIEFAK

AT4G12640.1 RNA recognition motif (RRM)-containing protein2.2e-2770.13Show/hide
Query:  NPPSRHLWVGNLSHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFALGGNPIRIEFAKA
        NPPSRHLWVGNL H ++ER+L+  F +FGEL+S+AFQP RSYAF+NF  DEDA AA+  LQGF L GNP+RIEFAKA
Subjt:  NPPSRHLWVGNLSHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFALGGNPIRIEFAKA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCTCAGCAGTAATTCACTTAGAATCCATTTCCGTGTGGCTGAGGTGGCACGACGGTTGGACGATAAATTTTCGCTCGGGCCGGGTTGATGGAGGAAGGGATCGATA
TCGAAAAGATTATACGTCGAGATATGACGAGAAGTCGCAGTCTGGGCATAGCAATAACAGCAATCCTCCGTCGAGACATCTCTGGGTGGGAAATTTGTCTCATGTTGTAG
TGGAGCGTGATCTAAGCCGCTACTTTTCACAGTTTGGAGAGCTCGACAGTATTGCTTTCCAGCCCAGTAGGAGCTATGCTTTCATCAATTTCAAAAGGGATGAAGATGCA
ATGGCAGCCATGAGAGAGCTTCAAGGTTTTGCTCTTGGAGGGAATCCCATTAGAATTGAGTTTGCCAAGGCGGTTAGTCTTGCCCGAACTTCTATCTGTTACTTTCTTCA
AATTCTTTTTATGTTTCCTTATTGTACATCTTTGATAGAATATATAACTATTTATTGGAAAACTTCAACAATGCTGACCTCCACTGAATTAAACTCACTCAACAACATGA
CTTTGATCACTTCTCCACAATTCTCAGTATCACAGGTCATATGTAATGCCTTCCACTTCGTCTGCCTTGACAATTTCTCTGAGTTGATTACATACACAAGATCTATGGAT
TTCAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCCTCAGCAGTAATTCACTTAGAATCCATTTCCGTGTGGCTGAGGTGGCACGACGGTTGGACGATAAATTTTCGCTCGGGCCGGGTTGATGGAGGAAGGGATCGATA
TCGAAAAGATTATACGTCGAGATATGACGAGAAGTCGCAGTCTGGGCATAGCAATAACAGCAATCCTCCGTCGAGACATCTCTGGGTGGGAAATTTGTCTCATGTTGTAG
TGGAGCGTGATCTAAGCCGCTACTTTTCACAGTTTGGAGAGCTCGACAGTATTGCTTTCCAGCCCAGTAGGAGCTATGCTTTCATCAATTTCAAAAGGGATGAAGATGCA
ATGGCAGCCATGAGAGAGCTTCAAGGTTTTGCTCTTGGAGGGAATCCCATTAGAATTGAGTTTGCCAAGGCGGTTAGTCTTGCCCGAACTTCTATCTGTTACTTTCTTCA
AATTCTTTTTATGTTTCCTTATTGTACATCTTTGATAGAATATATAACTATTTATTGGAAAACTTCAACAATGCTGACCTCCACTGAATTAAACTCACTCAACAACATGA
CTTTGATCACTTCTCCACAATTCTCAGTATCACAGGTCATATGTAATGCCTTCCACTTCGTCTGCCTTGACAATTTCTCTGAGTTGATTACATACACAAGATCTATGGAT
TTCAGTTGA
Protein sequenceShow/hide protein sequence
MSSAVIHLESISVWLRWHDGWTINFRSGRVDGGRDRYRKDYTSRYDEKSQSGHSNNSNPPSRHLWVGNLSHVVVERDLSRYFSQFGELDSIAFQPSRSYAFINFKRDEDA
MAAMRELQGFALGGNPIRIEFAKAVSLARTSICYFLQILFMFPYCTSLIEYITIYWKTSTMLTSTELNSLNNMTLITSPQFSVSQVICNAFHFVCLDNFSELITYTRSMD
FS