; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC02G036180 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC02G036180
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionRING-H2 finger protein ATL18-like
Genome locationCiama_Chr02:19256609..19258163
RNA-Seq ExpressionCaUC02G036180
SyntenyCaUC02G036180
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7010790.1 RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. argyrosperma]8.0e-1256.63Show/hide
Query:  DDLAEEEEICSICLTEFTRGDSSPVCQLLDCPFQLHPE-----------IGGLYRCFFNIHK-MTNDLRFVVPDNPSSLYYFL
        DD  EEEE+CSICLTEF R DS  VC+L DC    H +              L RCFFNI K     LRFVVPDNPSSLYYFL
Subjt:  DDLAEEEEICSICLTEFTRGDSSPVCQLLDCPFQLHPE-----------IGGLYRCFFNIHK-MTNDLRFVVPDNPSSLYYFL

TYK01060.1 RING-H2 finger protein ATL18-like [Cucumis melo var. makuwa]1.4e-0844.86Show/hide
Query:  PPSPLFSTANPWRNLTTLTSYIDDL-AEEEEICSICLTEFTRGDSSPVCQLLDCPFQLHPE-----------IGGLYRCFF--NIHKMTNDLRFVVPDNP
        P SP   T     +L  + SY +D     EEICSICLTEF R + S VC+L +C    H                L RCFF  + HKM    RF+VPDNP
Subjt:  PPSPLFSTANPWRNLTTLTSYIDDL-AEEEEICSICLTEFTRGDSSPVCQLLDCPFQLHPE-----------IGGLYRCFF--NIHKMTNDLRFVVPDNP

Query:  SSLYYFL
        SSLYYFL
Subjt:  SSLYYFL

XP_022140627.1 RING-H2 finger protein ATL64 [Momordica charantia]7.5e-1046.81Show/hide
Query:  PWRNLTTLTSYIDDLAEEEEICSICLTEFTRGDSSPVCQLLDCPFQLHPE-----------IGGLYRCFFNIHKMTNDLRFVVPDNPSSLYYFL
        P R    L    D  AE+E +CSICLTEF R DS  V +L DC    H                L RCFFNI      LRFV+PDNPS LYYFL
Subjt:  PWRNLTTLTSYIDDLAEEEEICSICLTEFTRGDSSPVCQLLDCPFQLHPE-----------IGGLYRCFFNIHKMTNDLRFVVPDNPSSLYYFL

XP_022944066.1 RING-H2 finger protein ATL18-like [Cucurbita moschata]2.7e-1257.83Show/hide
Query:  DDLAEEEEICSICLTEFTRGDSSPVCQLLDCPFQLHPE-----------IGGLYRCFFNIHK-MTNDLRFVVPDNPSSLYYFL
        DD AEEEE+CSICLTEF R DS  VC+L DC    H +              L RCFFNI K     LRFVVPDNPSSLYYFL
Subjt:  DDLAEEEEICSICLTEFTRGDSSPVCQLLDCPFQLHPE-----------IGGLYRCFFNIHK-MTNDLRFVVPDNPSSLYYFL

XP_023512248.1 RING-H2 finger protein ATL18-like [Cucurbita pepo subsp. pepo]8.0e-1256.63Show/hide
Query:  DDLAEEEEICSICLTEFTRGDSSPVCQLLDCPFQLHPE-----------IGGLYRCFFNIHK-MTNDLRFVVPDNPSSLYYFL
        DD  EEEE+CSICLTEF R DS  VC+L DC    H +              L RCFFNI K     LRFVVPDNPSSLYYFL
Subjt:  DDLAEEEEICSICLTEFTRGDSSPVCQLLDCPFQLHPE-----------IGGLYRCFFNIHK-MTNDLRFVVPDNPSSLYYFL

TrEMBL top hitse value%identityAlignment
A0A5A7TXY0 RING-H2 finger protein ATL18-like3.4e-0838.57Show/hide
Query:  MRFHFPEFAYAIPPPLLQHFPTDPPCFVSIKPFPPSPLFSTANPWRNLTTLTSYIDDL-AEEEEICSICLTEFTRGDSSPVCQLLDCPFQLHPE------
        MRF    F+  +  PL +          ++   P SP   T     +L  + SY +D     EEICSICLTEF R + S VC+L +C    H        
Subjt:  MRFHFPEFAYAIPPPLLQHFPTDPPCFVSIKPFPPSPLFSTANPWRNLTTLTSYIDDL-AEEEEICSICLTEFTRGDSSPVCQLLDCPFQLHPE------

Query:  -----IGGLYRCFF--NIHKMTNDLRFVVPDNPSSLYYFL
                L RCFF  + HKM    RF+VPDNPSSLYYFL
Subjt:  -----IGGLYRCFF--NIHKMTNDLRFVVPDNPSSLYYFL

A0A5D3BPT9 RING-H2 finger protein ATL18-like6.8e-0944.86Show/hide
Query:  PPSPLFSTANPWRNLTTLTSYIDDL-AEEEEICSICLTEFTRGDSSPVCQLLDCPFQLHPE-----------IGGLYRCFF--NIHKMTNDLRFVVPDNP
        P SP   T     +L  + SY +D     EEICSICLTEF R + S VC+L +C    H                L RCFF  + HKM    RF+VPDNP
Subjt:  PPSPLFSTANPWRNLTTLTSYIDDL-AEEEEICSICLTEFTRGDSSPVCQLLDCPFQLHPE-----------IGGLYRCFF--NIHKMTNDLRFVVPDNP

Query:  SSLYYFL
        SSLYYFL
Subjt:  SSLYYFL

A0A6J1CHK3 RING-H2 finger protein ATL643.6e-1046.81Show/hide
Query:  PWRNLTTLTSYIDDLAEEEEICSICLTEFTRGDSSPVCQLLDCPFQLHPE-----------IGGLYRCFFNIHKMTNDLRFVVPDNPSSLYYFL
        P R    L    D  AE+E +CSICLTEF R DS  V +L DC    H                L RCFFNI      LRFV+PDNPS LYYFL
Subjt:  PWRNLTTLTSYIDDLAEEEEICSICLTEFTRGDSSPVCQLLDCPFQLHPE-----------IGGLYRCFFNIHKMTNDLRFVVPDNPSSLYYFL

A0A6J1FTE6 RING-H2 finger protein ATL18-like1.3e-1257.83Show/hide
Query:  DDLAEEEEICSICLTEFTRGDSSPVCQLLDCPFQLHPE-----------IGGLYRCFFNIHK-MTNDLRFVVPDNPSSLYYFL
        DD AEEEE+CSICLTEF R DS  VC+L DC    H +              L RCFFNI K     LRFVVPDNPSSLYYFL
Subjt:  DDLAEEEEICSICLTEFTRGDSSPVCQLLDCPFQLHPE-----------IGGLYRCFFNIHK-MTNDLRFVVPDNPSSLYYFL

A0A6J1I5X8 RING-H2 finger protein ATL182.0e-0853.75Show/hide
Query:  EEEICSICLTEFTRGDSSPVCQLLDCPFQLHPE-----------IGGLYRC--FFNI-HKMTNDLRFVVPDNPSSLYYFL
        EEEICSICL EF RGDS  VC LLDC    H                L RC  FFNI ++    L+FVVPDNPS LYYFL
Subjt:  EEEICSICLTEFTRGDSSPVCQLLDCPFQLHPE-----------IGGLYRC--FFNI-HKMTNDLRFVVPDNPSSLYYFL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGTTTCATTTTCCTGAATTCGCGTATGCGATTCCTCCTCCCCTTCTCCAACACTTTCCTACGGATCCCCCTTGCTTTGTCTCAATCAAGCCATTCCCGCCATCACC
ACTCTTTTCCACCGCCAATCCCTGGCGGAACTTGACTACTCTGACAAGCTACATTGATGATCTGGCAGAAGAGGAGGAGATTTGCTCCATCTGTTTGACGGAGTTTACGA
GAGGAGATTCTTCCCCCGTGTGCCAATTGTTGGATTGTCCATTTCAATTGCATCCAGAAATAGGTGGACTCTATAGATGCTTCTTCAACATCCACAAGATGACCAACGAC
CTCCGCTTCGTCGTTCCAGATAATCCTTCCTCCCTCTATTATTTCTTGCACTCATTTCTGTTGATTAATTGTTTGAGGATTTGGAAATTTTGCTGTTCGATTTCCAATTC
TTTTGTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGGTTTCATTTTCCTGAATTCGCGTATGCGATTCCTCCTCCCCTTCTCCAACACTTTCCTACGGATCCCCCTTGCTTTGTCTCAATCAAGCCATTCCCGCCATCACC
ACTCTTTTCCACCGCCAATCCCTGGCGGAACTTGACTACTCTGACAAGCTACATTGATGATCTGGCAGAAGAGGAGGAGATTTGCTCCATCTGTTTGACGGAGTTTACGA
GAGGAGATTCTTCCCCCGTGTGCCAATTGTTGGATTGTCCATTTCAATTGCATCCAGAAATAGGTGGACTCTATAGATGCTTCTTCAACATCCACAAGATGACCAACGAC
CTCCGCTTCGTCGTTCCAGATAATCCTTCCTCCCTCTATTATTTCTTGCACTCATTTCTGTTGATTAATTGTTTGAGGATTTGGAAATTTTGCTGTTCGATTTCCAATTC
TTTTGTGTAA
Protein sequenceShow/hide protein sequence
MRFHFPEFAYAIPPPLLQHFPTDPPCFVSIKPFPPSPLFSTANPWRNLTTLTSYIDDLAEEEEICSICLTEFTRGDSSPVCQLLDCPFQLHPEIGGLYRCFFNIHKMTND
LRFVVPDNPSSLYYFLHSFLLINCLRIWKFCCSISNSFV