; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC02G036230 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC02G036230
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Description50S ribosomal protein L2, chloroplastic
Genome locationCiama_Chr02:19388441..19388842
RNA-Seq ExpressionCaUC02G036230
SyntenyCaUC02G036230
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0016740 - transferase activity (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR002171 - Ribosomal protein L2
IPR012340 - Nucleic acid-binding, OB-fold
IPR022666 - Ribosomal Proteins L2, RNA binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QCE13749.1 large subunit ribosomal protein L2 [Vigna unguiculata]2.0e-7099.25Show/hide
Query:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR
        MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR
Subjt:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR

Query:  YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
        YILHPRGAIIGDTIVSGTEVPIKMGNALPLSA+
Subjt:  YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV

TQD73878.1 hypothetical protein C1H46_040580 [Malus baccata]2.0e-7099.25Show/hide
Query:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR
        MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR
Subjt:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR

Query:  YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
        YILHPRGAIIGDTIVSGTEVPIKMGNALPLSA+
Subjt:  YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV

TXG46675.1 hypothetical protein EZV62_027830 [Acer yangbiense]2.0e-7099.25Show/hide
Query:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR
        MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR
Subjt:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR

Query:  YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
        YILHPRGAIIGDTIVSGTEVPIKMGNALPLSA+
Subjt:  YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV

YP_009346521.1 ribosomal protein L2 [Cucumis x hytivus]1.5e-70100Show/hide
Query:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR
        MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR
Subjt:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR

Query:  YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
        YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
Subjt:  YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV

YP_009715437.1 ribosomal protein L2 [Colvillea racemosa]1.5e-70100Show/hide
Query:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR
        MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR
Subjt:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR

Query:  YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
        YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
Subjt:  YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV

TrEMBL top hitse value%identityAlignment
A0A2R4LW47 Ribosomal protein L27.3e-71100Show/hide
Query:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR
        MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR
Subjt:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR

Query:  YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
        YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
Subjt:  YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV

A0A411JNR1 Ribosomal protein L27.3e-71100Show/hide
Query:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR
        MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR
Subjt:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR

Query:  YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
        YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
Subjt:  YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV

A0A411K339 Ribosomal protein L27.3e-71100Show/hide
Query:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR
        MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR
Subjt:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR

Query:  YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
        YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
Subjt:  YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV

A0A444YNM0 50S ribosomal protein7.3e-71100Show/hide
Query:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR
        MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR
Subjt:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR

Query:  YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
        YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
Subjt:  YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV

A0A6B9DEH2 Ribosomal protein L27.3e-71100Show/hide
Query:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR
        MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR
Subjt:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR

Query:  YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
        YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
Subjt:  YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV

SwissProt top hitse value%identityAlignment
A0A398 50S ribosomal protein L2-B, chloroplastic1.1e-7197.73Show/hide
Query:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR
        MAIHLYKTSTPSTRNG VDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRR EKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR
Subjt:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR

Query:  YILHPRGAIIGDTIVSGTEVPIKMGNALPLSA
        YILHPRGA+IGDTIVSGTEVPIKMGNALPLSA
Subjt:  YILHPRGAIIGDTIVSGTEVPIKMGNALPLSA

Q09MB2 50S ribosomal protein L2, chloroplastic2.9e-7299.24Show/hide
Query:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR
        MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR
Subjt:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR

Query:  YILHPRGAIIGDTIVSGTEVPIKMGNALPLS
        YILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Subjt:  YILHPRGAIIGDTIVSGTEVPIKMGNALPLS

Q0ZIX7 50S ribosomal protein L2, chloroplastic2.4e-7198.47Show/hide
Query:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR
        MAIHLYKTSTPSTRN AVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR
Subjt:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR

Query:  YILHPRGAIIGDTIVSGTEVPIKMGNALPLS
        YILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Subjt:  YILHPRGAIIGDTIVSGTEVPIKMGNALPLS

Q2PMM3 50S ribosomal protein L2-B, chloroplastic4.1e-7197.71Show/hide
Query:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR
        MAIHLYKTSTPSTRNGAVDSQVKSNPRN+LIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEK+IYGRIVTIEYDPNRNAYICLIHYGDGEK+
Subjt:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR

Query:  YILHPRGAIIGDTIVSGTEVPIKMGNALPLS
        YILHPRGAIIGDTIVSGTEVPIKMGNALPLS
Subjt:  YILHPRGAIIGDTIVSGTEVPIKMGNALPLS

Q4VZK5 50S ribosomal protein L2, chloroplastic2.9e-7299.24Show/hide
Query:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR
        MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR
Subjt:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR

Query:  YILHPRGAIIGDTIVSGTEVPIKMGNALPLS
        YILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Subjt:  YILHPRGAIIGDTIVSGTEVPIKMGNALPLS

Arabidopsis top hitse value%identityAlignment
AT2G07715.1 Nucleic acid-binding, OB-fold-like protein5.1e-0848.28Show/hide
Query:  GRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDG
        GRN+ G IT  HRGGG KRL R+ID +R+   + G + +IEYDPNR++ I  + +  G
Subjt:  GRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDG

ATCG00830.1 ribosomal protein L23.6e-7096.18Show/hide
Query:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR
        MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLI GQH CGKGRNARGIITA HRGGGHKRLYRKIDFRRN KDIYGRIVTIEYDPNRNAYICLIHYGDGEKR
Subjt:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR

Query:  YILHPRGAIIGDTIVSGTEVPIKMGNALPLS
        YILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Subjt:  YILHPRGAIIGDTIVSGTEVPIKMGNALPLS

ATCG01310.1 ribosomal protein L23.6e-7096.18Show/hide
Query:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR
        MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLI GQH CGKGRNARGIITA HRGGGHKRLYRKIDFRRN KDIYGRIVTIEYDPNRNAYICLIHYGDGEKR
Subjt:  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR

Query:  YILHPRGAIIGDTIVSGTEVPIKMGNALPLS
        YILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Subjt:  YILHPRGAIIGDTIVSGTEVPIKMGNALPLS

ATMG00560.1 Nucleic acid-binding, OB-fold-like protein5.1e-0848.28Show/hide
Query:  GRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDG
        GRN+ G IT  HRGGG KRL R+ID +R+   + G + +IEYDPNR++ I  + +  G
Subjt:  GRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGTCAAGTAAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTG
TGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAAAAGACATATATG
GTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACATCCCAGAGGGGCTATAATT
GGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGTCAAGTAAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTG
TGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAAAAGACATATATG
GTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACATCCCAGAGGGGCTATAATT
GGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGGTTTGA
Protein sequenceShow/hide protein sequence
MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAII
GDTIVSGTEVPIKMGNALPLSAV