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CaUC02G036600 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC02G036600
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Description50S ribosomal protein L2, chloroplastic
Genome locationCiama_Chr02:21324069..21344846
RNA-Seq ExpressionCaUC02G036600
SyntenyCaUC02G036600
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009536 - plastid (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0010279 - indole-3-acetic acid amido synthetase activity (molecular function)
InterPro domainsIPR008991 - Translation protein SH3-like domain superfamily
IPR014722 - Ribosomal protein L2, domain 2
IPR022669 - Ribosomal protein L2, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QTF74869.1 ribosomal protein L2 [Corydalis bungeana]4.1e-2170.97Show/hide
Query:  MGNNTSLDDILLYTDSYQSLYC-----TAIHNIKITLGKGGQLPRAIGAVAKLIAKEGKSATLKLPSGEVCLISKNFSATVGQVENAGVNQKS
        MGN   L ++L+     +S        TAIHNI+ITLGKGGQL RA GAVAKLIAKEGKSATLKLPSGEV LISKN SATVGQV NAGVNQKS
Subjt:  MGNNTSLDDILLYTDSYQSLYC-----TAIHNIKITLGKGGQLPRAIGAVAKLIAKEGKSATLKLPSGEVCLISKNFSATVGQVENAGVNQKS

XP_004140044.1 indole-3-acetic acid-amido synthetase GH3.6 [Cucumis sativus]2.8e-2270.89Show/hide
Query:  NYLMPRMKQLFPNINWHKGKGMNFHFAKPELKTKAGII-----GGMWKRPSNLKSRPMGNNTSLDDILLYTDSYQSLYC
        +Y+MPRMKQLFP+INWHK KG+NFHFAKPE KTK GII       + KR SNL+S P GNNTS DDI+L TDSYQSLYC
Subjt:  NYLMPRMKQLFPNINWHKGKGMNFHFAKPELKTKAGII-----GGMWKRPSNLKSRPMGNNTSLDDILLYTDSYQSLYC

XP_008448232.1 PREDICTED: indole-3-acetic acid-amido synthetase GH3.6-like [Cucumis melo]1.7e-2269.62Show/hide
Query:  NYLMPRMKQLFPNINWHKGKGMNFHFAKPELKTKAGII-----GGMWKRPSNLKSRPMGNNTSLDDILLYTDSYQSLYC
        +Y+ PRMKQLFPNINWHK KG+NFHFAKPE KTK GI+       + KR SNL+S P GNNTS DDI+L TDSYQSLYC
Subjt:  NYLMPRMKQLFPNINWHKGKGMNFHFAKPELKTKAGII-----GGMWKRPSNLKSRPMGNNTSLDDILLYTDSYQSLYC

XP_038902067.1 indole-3-acetic acid-amido synthetase GH3.5-like [Benincasa hispida]6.1e-2575.95Show/hide
Query:  NYLMPRMKQLFPNINWHKGKGMNFHFAKPELKTKAGII-----GGMWKRPSNLKSRPMGNNTSLDDILLYTDSYQSLYC
        NY+MPRMKQLFPNINW KGKGMNFHFAKPE KTKAGII       + KR SNLKS+P+GNNTS DDI+L TDS+QSLYC
Subjt:  NYLMPRMKQLFPNINWHKGKGMNFHFAKPELKTKAGII-----GGMWKRPSNLKSRPMGNNTSLDDILLYTDSYQSLYC

YP_009474013.1 ribosomal protein L2 [Itoa orientalis]4.1e-2161.4Show/hide
Query:  LKTKAGIIGGMWKRPSNLKSRPMGNNTSLDDILL----YTDSYQSLYCTAIHNIKITLGKGGQLPRAIGAVAKLIAKEGKSATLKLPSGEVCLISKNFSA
        L T+  IIG      + +  + MGN   L ++L+     + S      TAIHNI+ITLG+GGQL RA GAVAKLIAKEGKSATLKLPSGEV LISKN SA
Subjt:  LKTKAGIIGGMWKRPSNLKSRPMGNNTSLDDILL----YTDSYQSLYCTAIHNIKITLGKGGQLPRAIGAVAKLIAKEGKSATLKLPSGEVCLISKNFSA

Query:  TVGQVENAGVNQKS
        TVGQV NAGVNQKS
Subjt:  TVGQVENAGVNQKS

TrEMBL top hitse value%identityAlignment
A0A0A0KAF9 Uncharacterized protein1.4e-2270.89Show/hide
Query:  NYLMPRMKQLFPNINWHKGKGMNFHFAKPELKTKAGII-----GGMWKRPSNLKSRPMGNNTSLDDILLYTDSYQSLYC
        +Y+MPRMKQLFP+INWHK KG+NFHFAKPE KTK GII       + KR SNL+S P GNNTS DDI+L TDSYQSLYC
Subjt:  NYLMPRMKQLFPNINWHKGKGMNFHFAKPELKTKAGII-----GGMWKRPSNLKSRPMGNNTSLDDILLYTDSYQSLYC

A0A1S3BJT8 indole-3-acetic acid-amido synthetase GH3.6-like8.1e-2369.62Show/hide
Query:  NYLMPRMKQLFPNINWHKGKGMNFHFAKPELKTKAGII-----GGMWKRPSNLKSRPMGNNTSLDDILLYTDSYQSLYC
        +Y+ PRMKQLFPNINWHK KG+NFHFAKPE KTK GI+       + KR SNL+S P GNNTS DDI+L TDSYQSLYC
Subjt:  NYLMPRMKQLFPNINWHKGKGMNFHFAKPELKTKAGII-----GGMWKRPSNLKSRPMGNNTSLDDILLYTDSYQSLYC

A0A2P1CRN3 50S ribosomal protein L2, chloroplastic2.0e-2161.4Show/hide
Query:  LKTKAGIIGGMWKRPSNLKSRPMGNNTSLDDILL----YTDSYQSLYCTAIHNIKITLGKGGQLPRAIGAVAKLIAKEGKSATLKLPSGEVCLISKNFSA
        L T+  IIG      + +  + MGN   L ++L+     + S      TAIHNI+ITLG+GGQL RA GAVAKLIAKEGKSATLKLPSGEV LISKN SA
Subjt:  LKTKAGIIGGMWKRPSNLKSRPMGNNTSLDDILL----YTDSYQSLYCTAIHNIKITLGKGGQLPRAIGAVAKLIAKEGKSATLKLPSGEVCLISKNFSA

Query:  TVGQVENAGVNQKS
        TVGQV NAGVNQKS
Subjt:  TVGQVENAGVNQKS

A0A5A7V3L5 Indole-3-acetic acid-amido synthetase GH3.6-like8.1e-2369.62Show/hide
Query:  NYLMPRMKQLFPNINWHKGKGMNFHFAKPELKTKAGII-----GGMWKRPSNLKSRPMGNNTSLDDILLYTDSYQSLYC
        +Y+ PRMKQLFPNINWHK KG+NFHFAKPE KTK GI+       + KR SNL+S P GNNTS DDI+L TDSYQSLYC
Subjt:  NYLMPRMKQLFPNINWHKGKGMNFHFAKPELKTKAGII-----GGMWKRPSNLKSRPMGNNTSLDDILLYTDSYQSLYC

A0A650FCJ1 50S ribosomal protein L2, chloroplastic2.6e-2171.74Show/hide
Query:  MGNNTSLDDILL----YTDSYQSLYCTAIHNIKITLGKGGQLPRAIGAVAKLIAKEGKSATLKLPSGEVCLISKNFSATVGQVENAGVNQKS
        MGN   L ++L+     + S      TAIHNI+ITLGKGGQL RA GAVAKLIAKEGKSATLKLPSGEV LISKN SATVGQV NAGVNQKS
Subjt:  MGNNTSLDDILL----YTDSYQSLYCTAIHNIKITLGKGGQLPRAIGAVAKLIAKEGKSATLKLPSGEVCLISKNFSATVGQVENAGVNQKS

SwissProt top hitse value%identityAlignment
A4GYV2 50S ribosomal protein L2, chloroplastic4.5e-2373.86Show/hide
Query:  MGNNTSLDDILLYTDSYQSLYCTAIHNIKITLGKGGQLPRAIGAVAKLIAKEGKSATLKLPSGEVCLISKNFSATVGQVENAGVNQKS
        MGN   L D+ L          TAIHNI+ITLG+GGQL RA GAVAKLIAKEGKSATLKLPSGEV LISKN SATVGQV NAGVNQKS
Subjt:  MGNNTSLDDILLYTDSYQSLYCTAIHNIKITLGKGGQLPRAIGAVAKLIAKEGKSATLKLPSGEVCLISKNFSATVGQVENAGVNQKS

Q09FY3 50S ribosomal protein L2, chloroplastic4.5e-2373.86Show/hide
Query:  MGNNTSLDDILLYTDSYQSLYCTAIHNIKITLGKGGQLPRAIGAVAKLIAKEGKSATLKLPSGEVCLISKNFSATVGQVENAGVNQKS
        MGN   L + L  TD       TAIHNI+ITLGKGGQL RA GAVAKLIAKEGKSATLKLPSGEV LISKN SAT GQV N GVNQKS
Subjt:  MGNNTSLDDILLYTDSYQSLYCTAIHNIKITLGKGGQLPRAIGAVAKLIAKEGKSATLKLPSGEVCLISKNFSATVGQVENAGVNQKS

Q14FB6 50S ribosomal protein L2-B, chloroplastic4.5e-2373.86Show/hide
Query:  MGNNTSLDDILLYTDSYQSLYCTAIHNIKITLGKGGQLPRAIGAVAKLIAKEGKSATLKLPSGEVCLISKNFSATVGQVENAGVNQKS
        MGN   L D+ L          TAIHNI+ITLG+GGQL RA GAVAKLIAKEGKSATLKLPSGEV LISKN SATVGQV NAGVNQKS
Subjt:  MGNNTSLDDILLYTDSYQSLYCTAIHNIKITLGKGGQLPRAIGAVAKLIAKEGKSATLKLPSGEVCLISKNFSATVGQVENAGVNQKS

Q4VZK5 50S ribosomal protein L2, chloroplastic2.0e-2375Show/hide
Query:  MGNNTSLDDILLYTDSYQSLYCTAIHNIKITLGKGGQLPRAIGAVAKLIAKEGKSATLKLPSGEVCLISKNFSATVGQVENAGVNQKS
        MGN   L D+ L          TAIHNI+ITLGKGGQL RA GAVAKLIAKEGKSATLKLPSGEV LISKN SATVGQV NAGVNQKS
Subjt:  MGNNTSLDDILLYTDSYQSLYCTAIHNIKITLGKGGQLPRAIGAVAKLIAKEGKSATLKLPSGEVCLISKNFSATVGQVENAGVNQKS

Q8S8V3 50S ribosomal protein L2-A, chloroplastic5.9e-2373.86Show/hide
Query:  MGNNTSLDDILLYTDSYQSLYCTAIHNIKITLGKGGQLPRAIGAVAKLIAKEGKSATLKLPSGEVCLISKNFSATVGQVENAGVNQKS
        MGN   L D+ L          TAIHNI+ITLGKGGQL RA GAVAKLIAKEGKSATLKLPSGEV LISKN SATVGQV N GVNQKS
Subjt:  MGNNTSLDDILLYTDSYQSLYCTAIHNIKITLGKGGQLPRAIGAVAKLIAKEGKSATLKLPSGEVCLISKNFSATVGQVENAGVNQKS

Arabidopsis top hitse value%identityAlignment
AT2G24960.1 unknown protein7.5e-0526Show/hide
Query:  LESRVRTLKRQCNLIVEMLGLGYSGFGWKAERKCIDCEPEILDAWVRPKHNTFHL-------------MQSYPSAKGLRHKSFPFFDDLAIVFGKDIAIG
        L++R + L+R  N I  +  L  +GF W A R  +  + +I + +++  H  F               +Q++P A+  R K+ P + +L  +FGK+ + G
Subjt:  LESRVRTLKRQCNLIVEMLGLGYSGFGWKAERKCIDCEPEILDAWVRPKHNTFHL-------------MQSYPSAKGLRHKSFPFFDDLAIVFGKDIAIG

AT5G27260.1 unknown protein3.0e-0630.68Show/hide
Query:  SRVRTLKRQCNLIVEMLGLGYSGFGWKAERKCIDCEPEILDAWVRPKHNTFHLMQSYPSAKGLRHKSFPFFDDLAIVFGKDIAIGNRA
        SR++ LK Q    +++     SGFGW    K      E+   +          ++++P+ K LR+ +F FFD+L I+FG+ +A G  A
Subjt:  SRVRTLKRQCNLIVEMLGLGYSGFGWKAERKCIDCEPEILDAWVRPKHNTFHLMQSYPSAKGLRHKSFPFFDDLAIVFGKDIAIGNRA

AT5G54510.1 Auxin-responsive GH3 family protein6.8e-0641.03Show/hide
Query:  LMPRMKQLFPNINWHKGKGMNFHFAKPELKTKAGI----IGGMWKRPSNLKSRPMG---NNTSLDDILLYTDSYQSLY
        LMP M Q  P ++  KGKGM F F K E KT  G+    +   + + S+ K+RP     N TS +  +L +DSYQS+Y
Subjt:  LMPRMKQLFPNINWHKGKGMNFHFAKPELKTKAGI----IGGMWKRPSNLKSRPMG---NNTSLDDILLYTDSYQSLY

ATCG00830.1 ribosomal protein L29.4e-2472.73Show/hide
Query:  MGNNTSLDDILLYTDSYQSLYCTAIHNIKITLGKGGQLPRAIGAVAKLIAKEGKSATLKLPSGEVCLISKNFSATVGQVENAGVNQKS
        MGN   L D+ L          TAIHNI+ITLG+GGQL RA GAVAKLIAKEGKSATLKLPSGEV LISKN SATVGQV N GVNQKS
Subjt:  MGNNTSLDDILLYTDSYQSLYCTAIHNIKITLGKGGQLPRAIGAVAKLIAKEGKSATLKLPSGEVCLISKNFSATVGQVENAGVNQKS

ATCG01310.1 ribosomal protein L29.4e-2472.73Show/hide
Query:  MGNNTSLDDILLYTDSYQSLYCTAIHNIKITLGKGGQLPRAIGAVAKLIAKEGKSATLKLPSGEVCLISKNFSATVGQVENAGVNQKS
        MGN   L D+ L          TAIHNI+ITLG+GGQL RA GAVAKLIAKEGKSATLKLPSGEV LISKN SATVGQV N GVNQKS
Subjt:  MGNNTSLDDILLYTDSYQSLYCTAIHNIKITLGKGGQLPRAIGAVAKLIAKEGKSATLKLPSGEVCLISKNFSATVGQVENAGVNQKS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAACATTAGGATTGCGATCAAGAGCCTCCAAACATATATGGACGAATGAAGAGGATAGAATTCTGGTAAGCCCCAATTTAGAGTCCAGGGTGAGGACGTTGAAGAG
ACAATGCAACCTGATCGTTGAAATGTTGGGCCTAGGATATAGTGGGTTCGGTTGGAAAGCGGAGCGGAAGTGTATCGACTGTGAGCCTGAGATACTCGATGCGTGGGTCA
GGCCAAAACATAACACATTTCATTTGATGCAAAGTTATCCAAGTGCCAAAGGTCTCAGGCATAAGTCATTTCCATTCTTTGATGACCTGGCAATTGTATTTGGCAAAGAC
ATAGCAATAGGGAATCGTGCCACTACCACTGCTGAGAAAATGTGGCATGTTGAACTCTCCTCTCCCAAATTTCTCTCTCCTCTCCCAAGCACCCCCTTGAACTATTTAAT
GCCAAGGATGAAACAATTGTTTCCAAATATCAATTGGCACAAGGGCAAAGGAATGAACTTTCATTTTGCAAAGCCTGAGTTAAAGACAAAAGCTGGAATTATTGGTGGTA
TGTGGAAAAGACCATCAAACCTCAAAAGCAGACCAATGGGGAATAACACAAGCCTTGATGACATCCTTCTCTACACGGACTCATACCAAAGCCTATACTGCACAGCCATA
CATAACATAAAAATCACACTTGGGAAGGGGGGACAATTACCTAGAGCAATAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACACTAAAATTACCTTC
TGGGGAGGTCTGTTTGATATCCAAGAATTTCTCAGCAACAGTCGGACAAGTGGAGAATGCTGGGGTAAACCAGAAAAGTCATGTCTTCATCCATAGGGTCCCAAGTACCC
GGATCAATCAAAAGAAACGGAGGCGTGCAAAGGTTTCCTCGAGCCAGACGGAGATTGGCCCTCAAGTGCAAAGGCAGAAGGGAGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAACATTAGGATTGCGATCAAGAGCCTCCAAACATATATGGACGAATGAAGAGGATAGAATTCTGGTAAGCCCCAATTTAGAGTCCAGGGTGAGGACGTTGAAGAG
ACAATGCAACCTGATCGTTGAAATGTTGGGCCTAGGATATAGTGGGTTCGGTTGGAAAGCGGAGCGGAAGTGTATCGACTGTGAGCCTGAGATACTCGATGCGTGGGTCA
GGCCAAAACATAACACATTTCATTTGATGCAAAGTTATCCAAGTGCCAAAGGTCTCAGGCATAAGTCATTTCCATTCTTTGATGACCTGGCAATTGTATTTGGCAAAGAC
ATAGCAATAGGGAATCGTGCCACTACCACTGCTGAGAAAATGTGGCATGTTGAACTCTCCTCTCCCAAATTTCTCTCTCCTCTCCCAAGCACCCCCTTGAACTATTTAAT
GCCAAGGATGAAACAATTGTTTCCAAATATCAATTGGCACAAGGGCAAAGGAATGAACTTTCATTTTGCAAAGCCTGAGTTAAAGACAAAAGCTGGAATTATTGGTGGTA
TGTGGAAAAGACCATCAAACCTCAAAAGCAGACCAATGGGGAATAACACAAGCCTTGATGACATCCTTCTCTACACGGACTCATACCAAAGCCTATACTGCACAGCCATA
CATAACATAAAAATCACACTTGGGAAGGGGGGACAATTACCTAGAGCAATAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACACTAAAATTACCTTC
TGGGGAGGTCTGTTTGATATCCAAGAATTTCTCAGCAACAGTCGGACAAGTGGAGAATGCTGGGGTAAACCAGAAAAGTCATGTCTTCATCCATAGGGTCCCAAGTACCC
GGATCAATCAAAAGAAACGGAGGCGTGCAAAGGTTTCCTCGAGCCAGACGGAGATTGGCCCTCAAGTGCAAAGGCAGAAGGGAGCTTGA
Protein sequenceShow/hide protein sequence
METLGLRSRASKHIWTNEEDRILVSPNLESRVRTLKRQCNLIVEMLGLGYSGFGWKAERKCIDCEPEILDAWVRPKHNTFHLMQSYPSAKGLRHKSFPFFDDLAIVFGKD
IAIGNRATTTAEKMWHVELSSPKFLSPLPSTPLNYLMPRMKQLFPNINWHKGKGMNFHFAKPELKTKAGIIGGMWKRPSNLKSRPMGNNTSLDDILLYTDSYQSLYCTAI
HNIKITLGKGGQLPRAIGAVAKLIAKEGKSATLKLPSGEVCLISKNFSATVGQVENAGVNQKSHVFIHRVPSTRINQKKRRRAKVSSSQTEIGPQVQRQKGA