; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC02G036660 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC02G036660
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionRibonuclease H
Genome locationCiama_Chr02:21710874..21712802
RNA-Seq ExpressionCaUC02G036660
SyntenyCaUC02G036660
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK21788.1 uncharacterized protein E5676_scaffold1721G00440 [Cucumis melo var. makuwa]1.3e-3835.51Show/hide
Query:  QFDPIPMTYIKFLPRLFQSNQLAPGPIDPMQPLYPKWYDPNARCDYHAEAIGHSTKNCTALKYRVQALIKAGWLNFEKD-NGPEVNNHPLLDHQNPQVNV
        +FDPIPMTY + LP+L Q+ QLAP P+ P++P YPKW+D NARCDYHA  +GHST+NC ALK +VQ+LI AGWL+F+K    P VN +PL DH+NP+VNV
Subjt:  QFDPIPMTYIKFLPRLFQSNQLAPGPIDPMQPLYPKWYDPNARCDYHAEAIGHSTKNCTALKYRVQALIKAGWLNFEKD-NGPEVNNHPLLDHQNPQVNV

Query:  VDA------------------------------------------------------------------QEFGFKDVMSVM--MSKDEL-----------
        VD+                                                                  QE     +++V     KDE+           
Subjt:  VDA------------------------------------------------------------------QEFGFKDVMSVM--MSKDEL-----------

Query:  ----------------FQEKPNTTTS--NSKPITIQVSSPFEYKSSKAVSWNYVYKVLVEFGPIPIDNINEIGGITRCGRCY-------TLKELLKHKGK
                        +QE  N +TS  N K +TIQV SPF++K  KAV W Y  +V+   GP  +DNI  I GITR GRCY        L  L+  +G+
Subjt:  ----------------FQEKPNTTTS--NSKPITIQVSSPFEYKSSKAVSWNYVYKVLVEFGPIPIDNINEIGGITRCGRCY-------TLKELLKHKGK

Query:  DKGKAKIND-AIDCKVEEPMV
           K  + +   D  VE P++
Subjt:  DKGKAKIND-AIDCKVEEPMV

XP_022143495.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]1.9e-4035.9Show/hide
Query:  QSNQLAPGPIDPMQPLYPKWYDPNARCDYHAEAIGHSTKNCTALKYRVQALIKAGWLNFEKDNGPEVNNHPLLDHQNPQVNVVDAQEFGFKD-VMSVMMS
        +  +LA  P+DP+QP YP+W D NARCDYH  AIGHS +NCTALKYRVQALIKAGWLNF+K+NGP+V+N+PL +H N Q+N ++ QE   K  V  +   
Subjt:  QSNQLAPGPIDPMQPLYPKWYDPNARCDYHAEAIGHSTKNCTALKYRVQALIKAGWLNFEKDNGPEVNNHPLLDHQNPQVNVVDAQEFGFKD-VMSVMMS

Query:  KDELFQ----------------------------------------------------------------------------------------------
         +ELF+                                                                                              
Subjt:  KDELFQ----------------------------------------------------------------------------------------------

Query:  ------EKPNTTTSNSKPITIQVSSPFEYKSSKAVSWNYVYKVL----VEFGPIPIDNINEIGGITRCGRCYTLKELLKHKGK---DKGKAKINDAIDCK
              EKP+    + KPITI V +PFEYKSSKAV W Y  KV     V   P+P+DNI  +GG+T  GRCYT   LLK   +   +K K K ++    K
Subjt:  ------EKPNTTTSNSKPITIQVSSPFEYKSSKAVSWNYVYKVL----VEFGPIPIDNINEIGGITRCGRCYTLKELLKHKGK---DKGKAKINDAIDCK

Query:  VEEPMVKDHQGK
        VEE    D +GK
Subjt:  VEEPMVKDHQGK

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]8.9e-5138.37Show/hide
Query:  DTKEGRKQAQFDPIPMTYIKFLPRLFQSNQLAPGPIDPMQPLYPKWYDPNARCDYHAEAIGHSTKNCTALKYRVQALIKAGWLNFEKDNGPEVNNHPLLD
        + +  RKQ QFDPIPMTY + LP+LFQ+NQLAP P+DP+QP YP+WYD NARCDYHA AI HST+NCT LKYRVQALIKAGW NF+K+NG +V+   L +
Subjt:  DTKEGRKQAQFDPIPMTYIKFLPRLFQSNQLAPGPIDPMQPLYPKWYDPNARCDYHAEAIGHSTKNCTALKYRVQALIKAGWLNFEKDNGPEVNNHPLLD

Query:  HQNPQVNVVDAQEFGFK-----------------------------------------------------------------------------------
        HQN Q+N ++ Q    K                                                                                   
Subjt:  HQNPQVNVVDAQEFGFK-----------------------------------------------------------------------------------

Query:  ---DVMSVMMSKDEL--------FQEKPNTTTSNSKPITIQVSSPFEYKSSKAVSWNYVYKVL----VEFGPIPIDNINEIGGITRCGRCYTLKELLKHK
           D++    S D L        ++EKP+  + + KP  I V  PFEYKSSKAV W Y  KV     V    +P+DNI  +GG+TR GRCYT   LLK  
Subjt:  ---DVMSVMMSKDEL--------FQEKPNTTTSNSKPITIQVSSPFEYKSSKAVSWNYVYKVL----VEFGPIPIDNINEIGGITRCGRCYTLKELLKHK

Query:  GK---DKGKAKINDAIDCKVEEPMVKDHQGK
         +   +K K K ++    KVEE    D +GK
Subjt:  GK---DKGKAKINDAIDCKVEEPMVKDHQGK

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]2.5e-5339.39Show/hide
Query:  DTKEGRKQAQFDPIPMTYIKFLPRLFQSNQLAPGPIDPMQPLYPKWYDPNARCDYHAEAIGHSTKNCTALKYRVQALIKAGWLNFEKDNGPEVNNHPLLD
        + +  RKQ+QFDPIPMTY + LP+LFQ+NQLAP P+DP+QP YP WYD N RCDYHA AIGHST+NCTALKYRVQALIKAG L F+K+N P+V N+PL +
Subjt:  DTKEGRKQAQFDPIPMTYIKFLPRLFQSNQLAPGPIDPMQPLYPKWYDPNARCDYHAEAIGHSTKNCTALKYRVQALIKAGWLNFEKDNGPEVNNHPLLD

Query:  HQNPQVNVVDAQEFG-------------------------------------------------------------FKD---------VMSVMMSKDE--
        H+N Q+N V+ Q                                                                FK+         +++V  S  E  
Subjt:  HQNPQVNVVDAQEFG-------------------------------------------------------------FKD---------VMSVMMSKDE--

Query:  ------------------------LFQEKPNTTTSNSKPITIQVSSPFEYKSSKAVSWNYVYKVLV----EFGPIPIDNINEIGGITRCGRCYTLKELLK
                                L++EKP   +++ +PITIQV +PFEY SSKAV W Y  KV V    +   +P+DNI   GG+TR GRCYT + LLK
Subjt:  ------------------------LFQEKPNTTTSNSKPITIQVSSPFEYKSSKAVSWNYVYKVLV----EFGPIPIDNINEIGGITRCGRCYTLKELLK

Query:  HKGKDKGKAKINDAIDCKVEEPMVKDHQGK
        H  K     K   A + K  E + +D +GK
Subjt:  HKGKDKGKAKINDAIDCKVEEPMVKDHQGK

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]2.8e-5742.38Show/hide
Query:  RKQAQFDPIPMTYIKFLPRLFQSNQLAPGPIDPMQPLYPKWYDPNARCDYHAEAIGHSTKNCTALKYRVQALIKAGWLNFEKDNGPEVNNHPLLDHQNPQ
        RKQ QFDPIPMTY + LP+LFQ+NQLAP P+DP+QP YP+WYD NARCDYHA AIGHST+NCTALKYRVQALIKAGWLNF+K+NGP+V+ +PL +HQN Q
Subjt:  RKQAQFDPIPMTYIKFLPRLFQSNQLAPGPIDPMQPLYPKWYDPNARCDYHAEAIGHSTKNCTALKYRVQALIKAGWLNFEKDNGPEVNNHPLLDHQNPQ

Query:  VNVVDAQEFGFK----------------------------------------------------------------------------------------
        +N ++ QE   K                                                                                        
Subjt:  VNVVDAQEFGFK----------------------------------------------------------------------------------------

Query:  DVMSVMMSKDEL--------FQEKPNTTTSNSKPITIQVSSPFEYKSSKAVSWNYVYKVL----VEFGPIPIDNINEIGGITRCGRCYTLKELLK---HK
        DV     S D L        + EKPN    + KPITI V +PFEYKSSKAV W Y  KV     V   P+PIDNI  +GG+TR GRCYT   LLK     
Subjt:  DVMSVMMSKDEL--------FQEKPNTTTSNSKPITIQVSSPFEYKSSKAVSWNYVYKVL----VEFGPIPIDNINEIGGITRCGRCYTLKELLK---HK

Query:  GKDKGKAKINDAIDCKVEEPMVKDHQGK
          +K K K ++    KVEE    D +GK
Subjt:  GKDKGKAKINDAIDCKVEEPMVKDHQGK

TrEMBL top hitse value%identityAlignment
A0A6J1CNY7 Ribonuclease H1.7e-0772.22Show/hide
Query:  PMVKDHQGKWTLDYEGPYIVEKAFSGGALILTNMDG
        P+ KDH+GKWT +YEGP++V+KAFSGGAL+L NMDG
Subjt:  PMVKDHQGKWTLDYEGPYIVEKAFSGGALILTNMDG

A0A6J1CNY7 Ribonuclease H6.4e-3935.51Show/hide
Query:  QFDPIPMTYIKFLPRLFQSNQLAPGPIDPMQPLYPKWYDPNARCDYHAEAIGHSTKNCTALKYRVQALIKAGWLNFEKD-NGPEVNNHPLLDHQNPQVNV
        +FDPIPMTY + LP+L Q+ QLAP P+ P++P YPKW+D NARCDYHA  +GHST+NC ALK +VQ+LI AGWL+F+K    P VN +PL DH+NP+VNV
Subjt:  QFDPIPMTYIKFLPRLFQSNQLAPGPIDPMQPLYPKWYDPNARCDYHAEAIGHSTKNCTALKYRVQALIKAGWLNFEKD-NGPEVNNHPLLDHQNPQVNV

Query:  VDA------------------------------------------------------------------QEFGFKDVMSVM--MSKDEL-----------
        VD+                                                                  QE     +++V     KDE+           
Subjt:  VDA------------------------------------------------------------------QEFGFKDVMSVM--MSKDEL-----------

Query:  ----------------FQEKPNTTTS--NSKPITIQVSSPFEYKSSKAVSWNYVYKVLVEFGPIPIDNINEIGGITRCGRCY-------TLKELLKHKGK
                        +QE  N +TS  N K +TIQV SPF++K  KAV W Y  +V+   GP  +DNI  I GITR GRCY        L  L+  +G+
Subjt:  ----------------FQEKPNTTTS--NSKPITIQVSSPFEYKSSKAVSWNYVYKVLVEFGPIPIDNINEIGGITRCGRCY-------TLKELLKHKGK

Query:  DKGKAKIND-AIDCKVEEPMV
           K  + +   D  VE P++
Subjt:  DKGKAKIND-AIDCKVEEPMV

A0A6J1D099 Ribonuclease H4.3e-5138.37Show/hide
Query:  DTKEGRKQAQFDPIPMTYIKFLPRLFQSNQLAPGPIDPMQPLYPKWYDPNARCDYHAEAIGHSTKNCTALKYRVQALIKAGWLNFEKDNGPEVNNHPLLD
        + +  RKQ QFDPIPMTY + LP+LFQ+NQLAP P+DP+QP YP+WYD NARCDYHA AI HST+NCT LKYRVQALIKAGW NF+K+NG +V+   L +
Subjt:  DTKEGRKQAQFDPIPMTYIKFLPRLFQSNQLAPGPIDPMQPLYPKWYDPNARCDYHAEAIGHSTKNCTALKYRVQALIKAGWLNFEKDNGPEVNNHPLLD

Query:  HQNPQVNVVDAQEFGFK-----------------------------------------------------------------------------------
        HQN Q+N ++ Q    K                                                                                   
Subjt:  HQNPQVNVVDAQEFGFK-----------------------------------------------------------------------------------

Query:  ---DVMSVMMSKDEL--------FQEKPNTTTSNSKPITIQVSSPFEYKSSKAVSWNYVYKVL----VEFGPIPIDNINEIGGITRCGRCYTLKELLKHK
           D++    S D L        ++EKP+  + + KP  I V  PFEYKSSKAV W Y  KV     V    +P+DNI  +GG+TR GRCYT   LLK  
Subjt:  ---DVMSVMMSKDEL--------FQEKPNTTTSNSKPITIQVSSPFEYKSSKAVSWNYVYKVL----VEFGPIPIDNINEIGGITRCGRCYTLKELLKHK

Query:  GK---DKGKAKINDAIDCKVEEPMVKDHQGK
         +   +K K K ++    KVEE    D +GK
Subjt:  GK---DKGKAKINDAIDCKVEEPMVKDHQGK

A0A6J1D099 Ribonuclease H1.3e-0772.22Show/hide
Query:  PMVKDHQGKWTLDYEGPYIVEKAFSGGALILTNMDG
        P+ KDH+GKWT +YEGP++V+KAFSGGAL+L NMDG
Subjt:  PMVKDHQGKWTLDYEGPYIVEKAFSGGALILTNMDG

A0A6J1D099 Ribonuclease H6.9e-4135.9Show/hide
Query:  QSNQLAPGPIDPMQPLYPKWYDPNARCDYHAEAIGHSTKNCTALKYRVQALIKAGWLNFEKDNGPEVNNHPLLDHQNPQVNVVDAQEFGFKD-VMSVMMS
        +  +LA  P+DP+QP YP+W D NARCDYH  AIGHS +NCTALKYRVQALIKAGWLNF+K+NGP+V+N+PL +H N Q+N ++ QE   K  V  +   
Subjt:  QSNQLAPGPIDPMQPLYPKWYDPNARCDYHAEAIGHSTKNCTALKYRVQALIKAGWLNFEKDNGPEVNNHPLLDHQNPQVNVVDAQEFGFKD-VMSVMMS

Query:  KDELFQ----------------------------------------------------------------------------------------------
         +ELF+                                                                                              
Subjt:  KDELFQ----------------------------------------------------------------------------------------------

Query:  ------EKPNTTTSNSKPITIQVSSPFEYKSSKAVSWNYVYKVL----VEFGPIPIDNINEIGGITRCGRCYTLKELLKHKGK---DKGKAKINDAIDCK
              EKP+    + KPITI V +PFEYKSSKAV W Y  KV     V   P+P+DNI  +GG+T  GRCYT   LLK   +   +K K K ++    K
Subjt:  ------EKPNTTTSNSKPITIQVSSPFEYKSSKAVSWNYVYKVL----VEFGPIPIDNINEIGGITRCGRCYTLKELLKHKGK---DKGKAKINDAIDCK

Query:  VEEPMVKDHQGK
        VEE    D +GK
Subjt:  VEEPMVKDHQGK

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222311.2e-5339.39Show/hide
Query:  DTKEGRKQAQFDPIPMTYIKFLPRLFQSNQLAPGPIDPMQPLYPKWYDPNARCDYHAEAIGHSTKNCTALKYRVQALIKAGWLNFEKDNGPEVNNHPLLD
        + +  RKQ+QFDPIPMTY + LP+LFQ+NQLAP P+DP+QP YP WYD N RCDYHA AIGHST+NCTALKYRVQALIKAG L F+K+N P+V N+PL +
Subjt:  DTKEGRKQAQFDPIPMTYIKFLPRLFQSNQLAPGPIDPMQPLYPKWYDPNARCDYHAEAIGHSTKNCTALKYRVQALIKAGWLNFEKDNGPEVNNHPLLD

Query:  HQNPQVNVVDAQEFG-------------------------------------------------------------FKD---------VMSVMMSKDE--
        H+N Q+N V+ Q                                                                FK+         +++V  S  E  
Subjt:  HQNPQVNVVDAQEFG-------------------------------------------------------------FKD---------VMSVMMSKDE--

Query:  ------------------------LFQEKPNTTTSNSKPITIQVSSPFEYKSSKAVSWNYVYKVLV----EFGPIPIDNINEIGGITRCGRCYTLKELLK
                                L++EKP   +++ +PITIQV +PFEY SSKAV W Y  KV V    +   +P+DNI   GG+TR GRCYT + LLK
Subjt:  ------------------------LFQEKPNTTTSNSKPITIQVSSPFEYKSSKAVSWNYVYKVLV----EFGPIPIDNINEIGGITRCGRCYTLKELLK

Query:  HKGKDKGKAKINDAIDCKVEEPMVKDHQGK
        H  K     K   A + K  E + +D +GK
Subjt:  HKGKDKGKAKINDAIDCKVEEPMVKDHQGK

A0A6J1E2J7 Ribonuclease H1.4e-5742.38Show/hide
Query:  RKQAQFDPIPMTYIKFLPRLFQSNQLAPGPIDPMQPLYPKWYDPNARCDYHAEAIGHSTKNCTALKYRVQALIKAGWLNFEKDNGPEVNNHPLLDHQNPQ
        RKQ QFDPIPMTY + LP+LFQ+NQLAP P+DP+QP YP+WYD NARCDYHA AIGHST+NCTALKYRVQALIKAGWLNF+K+NGP+V+ +PL +HQN Q
Subjt:  RKQAQFDPIPMTYIKFLPRLFQSNQLAPGPIDPMQPLYPKWYDPNARCDYHAEAIGHSTKNCTALKYRVQALIKAGWLNFEKDNGPEVNNHPLLDHQNPQ

Query:  VNVVDAQEFGFK----------------------------------------------------------------------------------------
        +N ++ QE   K                                                                                        
Subjt:  VNVVDAQEFGFK----------------------------------------------------------------------------------------

Query:  DVMSVMMSKDEL--------FQEKPNTTTSNSKPITIQVSSPFEYKSSKAVSWNYVYKVL----VEFGPIPIDNINEIGGITRCGRCYTLKELLK---HK
        DV     S D L        + EKPN    + KPITI V +PFEYKSSKAV W Y  KV     V   P+PIDNI  +GG+TR GRCYT   LLK     
Subjt:  DVMSVMMSKDEL--------FQEKPNTTTSNSKPITIQVSSPFEYKSSKAVSWNYVYKVL----VEFGPIPIDNINEIGGITRCGRCYTLKELLK---HK

Query:  GKDKGKAKINDAIDCKVEEPMVKDHQGK
          +K K K ++    KVEE    D +GK
Subjt:  GKDKGKAKINDAIDCKVEEPMVKDHQGK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GATACTAAAGAGGGACGTAAACAAGCGCAGTTTGATCCGATCCCAATGACTTACATCAAGTTTCTACCACGACTATTCCAAAGTAATCAGTTAGCACCTGGACCAATAGA
TCCGATGCAACCTCTTTATCCTAAGTGGTATGACCCAAATGCTCGGTGTGATTATCATGCAGAAGCCATTGGTCATTCAACGAAAAATTGTACAGCACTTAAGTACAGGG
TGCAAGCATTGATCAAAGCAGGATGGCTGAATTTTGAGAAGGACAATGGACCGGAAGTGAATAACCACCCTCTTCTAGACCACCAGAATCCGCAAGTAAATGTTGTAGAT
GCACAAGAGTTTGGTTTTAAGGATGTCATGAGTGTAATGATGTCTAAAGATGAGCTTTTTCAAGAGAAACCCAATACCACCACTTCCAATTCAAAACCAATTACCATACA
AGTTTCGTCTCCATTTGAGTATAAAAGCTCAAAAGCAGTATCATGGAATTACGTGTACAAAGTACTTGTTGAGTTTGGACCTATCCCTATAGACAATATTAATGAAATTG
GAGGCATAACACGATGTGGAAGGTGTTATACGCTAAAGGAACTGTTGAAGCACAAAGGTAAAGATAAAGGAAAAGCTAAGATAAATGATGCTATTGATTGTAAGGTAGAG
GAACCCATGGTGAAAGATCACCAAGGAAAGTGGACTCTAGATTATGAAGGACCATACATAGTAGAAAAAGCTTTCTCTGGAGGAGCTTTGATCTTGACCAATATGGATGG
AGATTGA
mRNA sequenceShow/hide mRNA sequence
GATACTAAAGAGGGACGTAAACAAGCGCAGTTTGATCCGATCCCAATGACTTACATCAAGTTTCTACCACGACTATTCCAAAGTAATCAGTTAGCACCTGGACCAATAGA
TCCGATGCAACCTCTTTATCCTAAGTGGTATGACCCAAATGCTCGGTGTGATTATCATGCAGAAGCCATTGGTCATTCAACGAAAAATTGTACAGCACTTAAGTACAGGG
TGCAAGCATTGATCAAAGCAGGATGGCTGAATTTTGAGAAGGACAATGGACCGGAAGTGAATAACCACCCTCTTCTAGACCACCAGAATCCGCAAGTAAATGTTGTAGAT
GCACAAGAGTTTGGTTTTAAGGATGTCATGAGTGTAATGATGTCTAAAGATGAGCTTTTTCAAGAGAAACCCAATACCACCACTTCCAATTCAAAACCAATTACCATACA
AGTTTCGTCTCCATTTGAGTATAAAAGCTCAAAAGCAGTATCATGGAATTACGTGTACAAAGTACTTGTTGAGTTTGGACCTATCCCTATAGACAATATTAATGAAATTG
GAGGCATAACACGATGTGGAAGGTGTTATACGCTAAAGGAACTGTTGAAGCACAAAGGTAAAGATAAAGGAAAAGCTAAGATAAATGATGCTATTGATTGTAAGGTAGAG
GAACCCATGGTGAAAGATCACCAAGGAAAGTGGACTCTAGATTATGAAGGACCATACATAGTAGAAAAAGCTTTCTCTGGAGGAGCTTTGATCTTGACCAATATGGATGG
AGATTGA
Protein sequenceShow/hide protein sequence
DTKEGRKQAQFDPIPMTYIKFLPRLFQSNQLAPGPIDPMQPLYPKWYDPNARCDYHAEAIGHSTKNCTALKYRVQALIKAGWLNFEKDNGPEVNNHPLLDHQNPQVNVVD
AQEFGFKDVMSVMMSKDELFQEKPNTTTSNSKPITIQVSSPFEYKSSKAVSWNYVYKVLVEFGPIPIDNINEIGGITRCGRCYTLKELLKHKGKDKGKAKINDAIDCKVE
EPMVKDHQGKWTLDYEGPYIVEKAFSGGALILTNMDGD