; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC02G038460 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC02G038460
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionB3 domain-containing transcription factor VRN1-like
Genome locationCiama_Chr02:25004458..25006119
RNA-Seq ExpressionCaUC02G038460
SyntenyCaUC02G038460
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR003340 - B3 DNA binding domain
IPR015300 - DNA-binding pseudobarrel domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571413.1 B3 domain-containing transcription factor VRN1, partial [Cucurbita argyrosperma subsp. sororia]9.2e-1246.34Show/hide
Query:  WQVELRESNEEVWFEKGWQDFVKFYSVEIGYLLTFRYEGNFCFHEIVEKMIDVAESKNLEPRHKAGEKRVREETTVDLTCTR
        W+V L +++E++WFEKGW++FVKFYSVEIG+ LTFRYEGN CFH ++    D   S+   P    G+ + RE  ++    T+
Subjt:  WQVELRESNEEVWFEKGWQDFVKFYSVEIGYLLTFRYEGNFCFHEIVEKMIDVAESKNLEPRHKAGEKRVREETTVDLTCTR

KAG7011178.1 B3 domain-containing transcription factor VRN1, partial [Cucurbita argyrosperma subsp. argyrosperma]9.2e-1246.34Show/hide
Query:  WQVELRESNEEVWFEKGWQDFVKFYSVEIGYLLTFRYEGNFCFHEIVEKMIDVAESKNLEPRHKAGEKRVREETTVDLTCTR
        W+V L +++E++WFEKGW++FVKFYSVEIG+ LTFRYEGN CFH ++    D   S+   P    G+ + RE  ++    T+
Subjt:  WQVELRESNEEVWFEKGWQDFVKFYSVEIGYLLTFRYEGNFCFHEIVEKMIDVAESKNLEPRHKAGEKRVREETTVDLTCTR

XP_022928091.1 B3 domain-containing transcription factor VRN1-like [Cucurbita moschata]9.2e-1246.34Show/hide
Query:  WQVELRESNEEVWFEKGWQDFVKFYSVEIGYLLTFRYEGNFCFHEIVEKMIDVAESKNLEPRHKAGEKRVREETTVDLTCTR
        W+V L +++E++WFEKGW++FVKFYSVEIG+ LTFRYEGN CFH ++    D   S+   P    G+ + RE  ++    T+
Subjt:  WQVELRESNEEVWFEKGWQDFVKFYSVEIGYLLTFRYEGNFCFHEIVEKMIDVAESKNLEPRHKAGEKRVREETTVDLTCTR

XP_022971710.1 B3 domain-containing transcription factor VRN1-like [Cucurbita maxima]1.2e-1146.34Show/hide
Query:  WQVELRESNEEVWFEKGWQDFVKFYSVEIGYLLTFRYEGNFCFHEIVEKMIDVAESKNLEPRHKAGEKRVREETTVDLTCTR
        W+V L +++E++WFEKGW++FVKFYSVEIG+ LTFRYEGN CFH ++    D   S+   P    G+ + RE  ++    T+
Subjt:  WQVELRESNEEVWFEKGWQDFVKFYSVEIGYLLTFRYEGNFCFHEIVEKMIDVAESKNLEPRHKAGEKRVREETTVDLTCTR

XP_023513190.1 B3 domain-containing transcription factor VRN1-like [Cucurbita pepo subsp. pepo]9.2e-1246.34Show/hide
Query:  WQVELRESNEEVWFEKGWQDFVKFYSVEIGYLLTFRYEGNFCFHEIVEKMIDVAESKNLEPRHKAGEKRVREETTVDLTCTR
        W+V L +++E++WFEKGW++FVKFYSVEIG+ LTFRYEGN CFH ++    D   S+   P    G+ + RE  ++    T+
Subjt:  WQVELRESNEEVWFEKGWQDFVKFYSVEIGYLLTFRYEGNFCFHEIVEKMIDVAESKNLEPRHKAGEKRVREETTVDLTCTR

TrEMBL top hitse value%identityAlignment
A0A1S4E1R2 B3 domain-containing transcription factor VRN1-like4.2e-1034.43Show/hide
Query:  RWQVELRESNEEVWFEKGWQDFVKFYSVEIGYLLTFRYEGNFCFHEIV------EKMIDVAESKNLEPRHKAGEKRVREETTVDLTCTR----GDQTITR
        +W+V L++SNE+VWFEKGW++FVKF+S++ G+ LTFRYEGN CF  ++      E    ++     + +    EKR   + T+ +   R     D+ + +
Subjt:  RWQVELRESNEEVWFEKGWQDFVKFYSVEIGYLLTFRYEGNFCFHEIV------EKMIDVAESKNLEPRHKAGEKRVREETTVDLTCTR----GDQTITR

Query:  ELIEKL---DKIEKNQEESRDH
         L +K+   D++  N+   R H
Subjt:  ELIEKL---DKIEKNQEESRDH

A0A6J1DVA1 B3 domain-containing transcription factor VRN1-like3.5e-0954.17Show/hide
Query:  RWQVELRESNEEVWFEKGWQDFVKFYSVEIGYLLTFRYEGNFCFHEIV
        +W+VEL++S+ +VWF +GW +FV+FYSV++GY + FRYEGN CF+ ++
Subjt:  RWQVELRESNEEVWFEKGWQDFVKFYSVEIGYLLTFRYEGNFCFHEIV

A0A6J1E0D8 B3 domain-containing protein At4g01580-like1.2e-0946.75Show/hide
Query:  WQVELRESNEEVWFEKGWQDFVKFYSVEIGYLLTFRYEGNFCFHEIVEKMIDVAESKNLEPRHKAGEKRVREETTVD
        W+V + +SN +VWFEKGWQ FV+FYS+ +GY LTFRYE N CFH  +    D + S+   P    G+ R   E   D
Subjt:  WQVELRESNEEVWFEKGWQDFVKFYSVEIGYLLTFRYEGNFCFHEIVEKMIDVAESKNLEPRHKAGEKRVREETTVD

A0A6J1EJA7 B3 domain-containing transcription factor VRN1-like4.5e-1246.34Show/hide
Query:  WQVELRESNEEVWFEKGWQDFVKFYSVEIGYLLTFRYEGNFCFHEIVEKMIDVAESKNLEPRHKAGEKRVREETTVDLTCTR
        W+V L +++E++WFEKGW++FVKFYSVEIG+ LTFRYEGN CFH ++    D   S+   P    G+ + RE  ++    T+
Subjt:  WQVELRESNEEVWFEKGWQDFVKFYSVEIGYLLTFRYEGNFCFHEIVEKMIDVAESKNLEPRHKAGEKRVREETTVDLTCTR

A0A6J1I6H9 B3 domain-containing transcription factor VRN1-like5.8e-1246.34Show/hide
Query:  WQVELRESNEEVWFEKGWQDFVKFYSVEIGYLLTFRYEGNFCFHEIVEKMIDVAESKNLEPRHKAGEKRVREETTVDLTCTR
        W+V L +++E++WFEKGW++FVKFYSVEIG+ LTFRYEGN CFH ++    D   S+   P    G+ + RE  ++    T+
Subjt:  WQVELRESNEEVWFEKGWQDFVKFYSVEIGYLLTFRYEGNFCFHEIVEKMIDVAESKNLEPRHKAGEKRVREETTVDLTCTR

SwissProt top hitse value%identityAlignment
Q8L3W1 B3 domain-containing transcription factor VRN12.6e-0958.14Show/hide
Query:  WQVELRESNEEVWFEKGWQDFVKFYSVEIGYLLTFRYEGNFCF
        W+V LR+++ ++WF+ GWQ+FV  YS+ IGYLL FRYEGN  F
Subjt:  WQVELRESNEEVWFEKGWQDFVKFYSVEIGYLLTFRYEGNFCF

Q9XIB4 B3 domain-containing protein At1g494751.0e-0534.33Show/hide
Query:  VELRESNEEVWFEKGWQDFVKFYSVEIGYLLTFRYEGNFCFHEIVEKMIDVAESKNLEPRHKAGEKR
        + ++   +EVWFEKGW +F + +S+  G+ L F YEG+ CF  ++    DV+ S+   P     + R
Subjt:  VELRESNEEVWFEKGWQDFVKFYSVEIGYLLTFRYEGNFCFHEIVEKMIDVAESKNLEPRHKAGEKR

Arabidopsis top hitse value%identityAlignment
AT1G49475.1 AP2/B3-like transcriptional factor family protein7.3e-0734.33Show/hide
Query:  VELRESNEEVWFEKGWQDFVKFYSVEIGYLLTFRYEGNFCFHEIVEKMIDVAESKNLEPRHKAGEKR
        + ++   +EVWFEKGW +F + +S+  G+ L F YEG+ CF  ++    DV+ S+   P     + R
Subjt:  VELRESNEEVWFEKGWQDFVKFYSVEIGYLLTFRYEGNFCFHEIVEKMIDVAESKNLEPRHKAGEKR

AT3G18990.1 AP2/B3-like transcriptional factor family protein1.9e-1058.14Show/hide
Query:  WQVELRESNEEVWFEKGWQDFVKFYSVEIGYLLTFRYEGNFCF
        W+V LR+++ ++WF+ GWQ+FV  YS+ IGYLL FRYEGN  F
Subjt:  WQVELRESNEEVWFEKGWQDFVKFYSVEIGYLLTFRYEGNFCF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCAGAAGTTCCAAAGACATTTGTTAGAAAACATAGGGAAGTTCTGCAAGCTGAGGAGGTATGTCTTAAGGTGGCAAGTGGAATTGAGAGAAAGCAATGAAGAAGT
TTGGTTTGAAAAAGGGTGGCAAGATTTTGTGAAGTTTTACTCTGTTGAAATTGGATATTTATTAACATTTAGATATGAAGGCAATTTTTGCTTCCATGAAATAGTTGAGA
AGATGATTGACGTAGCTGAGTCTAAGAATTTGGAGCCACGGCATAAGGCGGGTGAAAAACGAGTTAGGGAGGAAACAACAGTCGATCTTACTTGTACGAGGGGAGATCAA
ACCATAACAAGAGAGCTTATAGAAAAGTTAGATAAGATTGAGAAAAACCAGGAAGAAAGTAGAGACCACACAGACCACGAGTTTGGAGCAATAACCAATGAAGTGTATAA
GGGGGCACTCCAGGTCGACGAGTTCGAAAAGAAGTTGGATGACATTGAGCGAGAAGTAGAGACTGAAACTGAAACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATCAGAAGTTCCAAAGACATTTGTTAGAAAACATAGGGAAGTTCTGCAAGCTGAGGAGGTATGTCTTAAGGTGGCAAGTGGAATTGAGAGAAAGCAATGAAGAAGT
TTGGTTTGAAAAAGGGTGGCAAGATTTTGTGAAGTTTTACTCTGTTGAAATTGGATATTTATTAACATTTAGATATGAAGGCAATTTTTGCTTCCATGAAATAGTTGAGA
AGATGATTGACGTAGCTGAGTCTAAGAATTTGGAGCCACGGCATAAGGCGGGTGAAAAACGAGTTAGGGAGGAAACAACAGTCGATCTTACTTGTACGAGGGGAGATCAA
ACCATAACAAGAGAGCTTATAGAAAAGTTAGATAAGATTGAGAAAAACCAGGAAGAAAGTAGAGACCACACAGACCACGAGTTTGGAGCAATAACCAATGAAGTGTATAA
GGGGGCACTCCAGGTCGACGAGTTCGAAAAGAAGTTGGATGACATTGAGCGAGAAGTAGAGACTGAAACTGAAACTTGA
Protein sequenceShow/hide protein sequence
MDQKFQRHLLENIGKFCKLRRYVLRWQVELRESNEEVWFEKGWQDFVKFYSVEIGYLLTFRYEGNFCFHEIVEKMIDVAESKNLEPRHKAGEKRVREETTVDLTCTRGDQ
TITRELIEKLDKIEKNQEESRDHTDHEFGAITNEVYKGALQVDEFEKKLDDIEREVETETET