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CaUC02G039970 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC02G039970
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionTransducin/WD-like repeat-protein
Genome locationCiama_Chr02:27175769..27176818
RNA-Seq ExpressionCaUC02G039970
SyntenyCaUC02G039970
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6418092.1 hypothetical protein SASPL_120291 [Salvia splendens]1.7e-0650.85Show/hide
Query:  ENEDLTLLDRFRDKNIGGCNEADL--AFEDEHDLGCAWMRVRRIQPAGSIVDSREGDAE
        ENED+  LD   D+++GG +EAD+  AFE +HDLG AW+ V R++ A  +VD+ +GDAE
Subjt:  ENEDLTLLDRFRDKNIGGCNEADL--AFEDEHDLGCAWMRVRRIQPAGSIVDSREGDAE

RWR75980.1 LOW QUALITY PROTEIN: transducin/WD-like repeat-protein [Cinnamomum micranthum f. kanehirae]3.1e-0535.76Show/hide
Query:  GEKRRRNRLS----TRQLAIKRRNHRRRNLSVVFLEVNQSLRENEDLTLLDRFRDKNI---GGCNEAD--LAFEDEHDLGCAWMRVRRIQP-AGSIVDSR
        G  R + R+S    T  L  K RN   R ++ + LEVN++  E++ ++L++    + I    G ++AD  L F+D   L   W+ VRR+ P  G      
Subjt:  GEKRRRNRLS----TRQLAIKRRNHRRRNLSVVFLEVNQSLRENEDLTLLDRFRDKNI---GGCNEAD--LAFEDEHDLGCAWMRVRRIQP-AGSIVDSR

Query:  EGDAEPGIDWTLAPVTREPRVLLVSPGLANPSKKKSFA--EKFDLQVNPFT
             PGI +T A VT  P + +V  GL+ P KKKSFA      LQ+NPFT
Subjt:  EGDAEPGIDWTLAPVTREPRVLLVSPGLANPSKKKSFA--EKFDLQVNPFT

RWV81621.1 hypothetical protein GW17_00056938, partial [Ensete ventricosum]2.4e-0547.83Show/hide
Query:  VFLEVNQSLRENEDLTLLDRFRDKNIGGCNEADL--AFEDEHDLGCAWMRVRRIQPAGSIVDSREGDAE
        V LEV+Q+  E+ED+ L D   D+ +GG +EA +  A E E DLG A + VRR+QPAG +VD+  G A+
Subjt:  VFLEVNQSLRENEDLTLLDRFRDKNIGGCNEADL--AFEDEHDLGCAWMRVRRIQPAGSIVDSREGDAE

TrEMBL top hitse value%identityAlignment
A0A3S3M2P0 Transducin/WD-like repeat-protein1.5e-0535.76Show/hide
Query:  GEKRRRNRLS----TRQLAIKRRNHRRRNLSVVFLEVNQSLRENEDLTLLDRFRDKNI---GGCNEAD--LAFEDEHDLGCAWMRVRRIQP-AGSIVDSR
        G  R + R+S    T  L  K RN   R ++ + LEVN++  E++ ++L++    + I    G ++AD  L F+D   L   W+ VRR+ P  G      
Subjt:  GEKRRRNRLS----TRQLAIKRRNHRRRNLSVVFLEVNQSLRENEDLTLLDRFRDKNI---GGCNEAD--LAFEDEHDLGCAWMRVRRIQP-AGSIVDSR

Query:  EGDAEPGIDWTLAPVTREPRVLLVSPGLANPSKKKSFA--EKFDLQVNPFT
             PGI +T A VT  P + +V  GL+ P KKKSFA      LQ+NPFT
Subjt:  EGDAEPGIDWTLAPVTREPRVLLVSPGLANPSKKKSFA--EKFDLQVNPFT

A0A444C6X6 Uncharacterized protein (Fragment)1.2e-0547.83Show/hide
Query:  VFLEVNQSLRENEDLTLLDRFRDKNIGGCNEADL--AFEDEHDLGCAWMRVRRIQPAGSIVDSREGDAE
        V LEV+Q+  E+ED+ L D   D+ +GG +EA +  A E E DLG A + VRR+QPAG +VD+  G A+
Subjt:  VFLEVNQSLRENEDLTLLDRFRDKNIGGCNEADL--AFEDEHDLGCAWMRVRRIQPAGSIVDSREGDAE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AACCTCCATTGGTTTGCCCTATTATTTCGGTGCAAGCCTCGATTTGATCTTCTCAACCTCCTTAGTCCCAATCTGAAACGCCTTCGTCAACACATTATCAGGAAC
CGGCGGAGATGCGGCGAAAAGCGCCGCCGCAATCGATTGAGTACCAGGCAACTGGCTATTAAACGCCGCAATCACCGCCGCCGGAACCTTTCCGTTGTTTTTCTG
GAAGTGAACCAATCCCTTCGGGAAAACGAAGATCTCACCCTTCTTGATCGATTTCGAGACAAGAACATTGGCGGTTGTAATGAAGCCGACTTGGCCTTCGAGGAC
GAACACGATCTCGGTTGCGCGTGGATGCGTGTGCGGCGGATTCAGCCCGCCGGGAGCATAGTCGATTCGCGAGAGGGAGACGCCGAGCCGGGGATTGATTGGACA
TTGGCTCCAGTTACTCGCGAGCCTAGGGTATTGTTGGTGAGCCCTGGTTTGGCCAATCCATCGAAGAAGAAATCGTTTGCTGAGAAATTCGATTTGCAGGTGAAT
CCGTTTACTTTGATTCCTGTTTTGATTCAAATGCTTCTGTCCAAAATAGAGATGGTGAAGGGTCTTGTTGGAACAAAAACCCTATACCCTTTACTCAACTATGAA
CAAATGAAAACCCACAAGGCCATAACCCTAAACTTAGAAACCAATGATTATGCAACCTTGTTAGAGAATTGGGGGAATATAGAAATAGAGAAAGAGAGGTTAGCT
mRNA sequenceShow/hide mRNA sequence
AACCTCCATTGGTTTGCCCTATTATTTCGGTGCAAGCCTCGATTTGATCTTCTCAACCTCCTTAGTCCCAATCTGAAACGCCTTCGTCAACACATTATCAGGAAC
CGGCGGAGATGCGGCGAAAAGCGCCGCCGCAATCGATTGAGTACCAGGCAACTGGCTATTAAACGCCGCAATCACCGCCGCCGGAACCTTTCCGTTGTTTTTCTG
GAAGTGAACCAATCCCTTCGGGAAAACGAAGATCTCACCCTTCTTGATCGATTTCGAGACAAGAACATTGGCGGTTGTAATGAAGCCGACTTGGCCTTCGAGGAC
GAACACGATCTCGGTTGCGCGTGGATGCGTGTGCGGCGGATTCAGCCCGCCGGGAGCATAGTCGATTCGCGAGAGGGAGACGCCGAGCCGGGGATTGATTGGACA
TTGGCTCCAGTTACTCGCGAGCCTAGGGTATTGTTGGTGAGCCCTGGTTTGGCCAATCCATCGAAGAAGAAATCGTTTGCTGAGAAATTCGATTTGCAGGTGAAT
CCGTTTACTTTGATTCCTGTTTTGATTCAAATGCTTCTGTCCAAAATAGAGATGGTGAAGGGTCTTGTTGGAACAAAAACCCTATACCCTTTACTCAACTATGAA
CAAATGAAAACCCACAAGGCCATAACCCTAAACTTAGAAACCAATGATTATGCAACCTTGTTAGAGAATTGGGGGAATATAGAAATAGAGAAAGAGAGGTTAGCT
Protein sequenceShow/hide protein sequence
NLHWFALLFRCKPRFDLLNLLSPNLKRLRQHIIRNRRRCGEKRRRNRLSTRQLAIKRRNHRRRNLSVVFLEVNQSLRENEDLTLLDRFRDKNIGGCNEADLAFED
EHDLGCAWMRVRRIQPAGSIVDSREGDAEPGIDWTLAPVTREPRVLLVSPGLANPSKKKSFAEKFDLQVNPFTLIPVLIQMLLSKIEMVKGLVGTKTLYPLLNYE
QMKTHKAITLNLETNDYATLLENWGNIEIEKERLA