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CaUC02G040080 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC02G040080
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Description40S ribosomal protein S23-1
Genome locationCiama_Chr02:27267000..27269180
RNA-Seq ExpressionCaUC02G040080
SyntenyCaUC02G040080
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022156333.1 uncharacterized protein LOC111023254 [Momordica charantia]5.2e-4289.69Show/hide
Query:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYG--LSIPRSLRWAACGAVSMSATSALLVRLFSPECEPQNIGAYDKRKV
        MALRR LGFSDGE+MRSDA PC QLMKQTAGLCTVGGGLAFWILCRLHYG  +++PRSLRWAACGAVSMSATSALLVRLFSPECEPQNI AYDKRKV
Subjt:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYG--LSIPRSLRWAACGAVSMSATSALLVRLFSPECEPQNIGAYDKRKV
XP_022937466.1 uncharacterized protein LOC111443868 [Cucurbita moschata]1.2e-4191.49Show/hide
Query:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYG--LSIPRSLRWAACGAVSMSATSALLVRLFSPECEPQNIGAYDK
        MALRRF GFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYG  +++PRSLRWAACGA SMSATSALLVRLFSPECEPQNI AYDK
Subjt:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYG--LSIPRSLRWAACGAVSMSATSALLVRLFSPECEPQNIGAYDK
XP_022969628.1 uncharacterized protein LOC111468599 [Cucurbita maxima]4.0e-4290.62Show/hide
Query:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYG--LSIPRSLRWAACGAVSMSATSALLVRLFSPECEPQNIGAYDKRK
        MALRRF GFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYG  +++PRSLRWAACGA SMSATSALLVRLFSPECEPQNI AYDK K
Subjt:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYG--LSIPRSLRWAACGAVSMSATSALLVRLFSPECEPQNIGAYDKRK
XP_023538321.1 uncharacterized protein LOC111799138 [Cucurbita pepo subsp. pepo]8.8e-4289.58Show/hide
Query:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYG--LSIPRSLRWAACGAVSMSATSALLVRLFSPECEPQNIGAYDKRK
        MALRRF GFSDG+LMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYG  +++PRSLRWAACGA SMSATSALLVRLFSPECEPQNI AYDK K
Subjt:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYG--LSIPRSLRWAACGAVSMSATSALLVRLFSPECEPQNIGAYDKRK
XP_038889141.1 uncharacterized protein LOC120079031 [Benincasa hispida]1.6e-4391.75Show/hide
Query:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYG--LSIPRSLRWAACGAVSMSATSALLVRLFSPECEPQNIGAYDKRKV
        MALRRFLGFSDGE+MRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYG  +++PRSLRWAACGA SMSATSALLVRLFSPECEPQNI AYDKRKV
Subjt:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYG--LSIPRSLRWAACGAVSMSATSALLVRLFSPECEPQNIGAYDKRKV
TrEMBL top hitse value%identityAlignment
A0A1S3BWM4 uncharacterized protein LOC1034939374.4e-3982.47Show/hide
Query:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYG--LSIPRSLRWAACGAVSMSATSALLVRLFSPECEPQNIGAYDKRKV
        MALRR LGFSDGE+MRSDAKPCSQLMKQTAGLC+V G L FW+LCRLHYG  +++PRSLRWAACGA SMSATSALLVRLFSPECEPQNI AYD+ K+
Subjt:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYG--LSIPRSLRWAACGAVSMSATSALLVRLFSPECEPQNIGAYDKRKV
A0A5D3BBN9 40S ribosomal protein S23-14.4e-3982.47Show/hide
Query:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYG--LSIPRSLRWAACGAVSMSATSALLVRLFSPECEPQNIGAYDKRKV
        MALRR LGFSDGE+MRSDAKPCSQLMKQTAGLC+V G L FW+LCRLHYG  +++PRSLRWAACGA SMSATSALLVRLFSPECEPQNI AYD+ K+
Subjt:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYG--LSIPRSLRWAACGAVSMSATSALLVRLFSPECEPQNIGAYDKRKV
A0A6J1DQC3 uncharacterized protein LOC1110232542.5e-4289.69Show/hide
Query:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYG--LSIPRSLRWAACGAVSMSATSALLVRLFSPECEPQNIGAYDKRKV
        MALRR LGFSDGE+MRSDA PC QLMKQTAGLCTVGGGLAFWILCRLHYG  +++PRSLRWAACGAVSMSATSALLVRLFSPECEPQNI AYDKRKV
Subjt:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYG--LSIPRSLRWAACGAVSMSATSALLVRLFSPECEPQNIGAYDKRKV
A0A6J1FAF1 uncharacterized protein LOC1114438685.6e-4291.49Show/hide
Query:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYG--LSIPRSLRWAACGAVSMSATSALLVRLFSPECEPQNIGAYDK
        MALRRF GFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYG  +++PRSLRWAACGA SMSATSALLVRLFSPECEPQNI AYDK
Subjt:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYG--LSIPRSLRWAACGAVSMSATSALLVRLFSPECEPQNIGAYDK
A0A6J1I1J3 uncharacterized protein LOC1114685991.9e-4290.62Show/hide
Query:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYG--LSIPRSLRWAACGAVSMSATSALLVRLFSPECEPQNIGAYDKRK
        MALRRF GFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYG  +++PRSLRWAACGA SMSATSALLVRLFSPECEPQNI AYDK K
Subjt:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYG--LSIPRSLRWAACGAVSMSATSALLVRLFSPECEPQNIGAYDKRK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G57540.1 unknown protein9.1e-3771.88Show/hide
Query:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYG--LSIPRSLRWAACGAVSMSATSALLVRLFSPECEPQNIGAYDKRK
        MALR+ LG+S+G+LMRSDAKPCS+LMKQTA + TVGG L FW+LCRLHYG  +++PRSLRWA CGA+S+S ++A+LVRLFSPECEPQNI AYD  K
Subjt:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYG--LSIPRSLRWAACGAVSMSATSALLVRLFSPECEPQNIGAYDKRK
AT1G57540.2 unknown protein9.1e-3771.88Show/hide
Query:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYG--LSIPRSLRWAACGAVSMSATSALLVRLFSPECEPQNIGAYDKRK
        MALR+ LG+S+G+LMRSDAKPCS+LMKQTA + TVGG L FW+LCRLHYG  +++PRSLRWA CGA+S+S ++A+LVRLFSPECEPQNI AYD  K
Subjt:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYG--LSIPRSLRWAACGAVSMSATSALLVRLFSPECEPQNIGAYDKRK
AT1G57540.3 unknown protein9.1e-3771.88Show/hide
Query:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYG--LSIPRSLRWAACGAVSMSATSALLVRLFSPECEPQNIGAYDKRK
        MALR+ LG+S+G+LMRSDAKPCS+LMKQTA + TVGG L FW+LCRLHYG  +++PRSLRWA CGA+S+S ++A+LVRLFSPECEPQNI AYD  K
Subjt:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYG--LSIPRSLRWAACGAVSMSATSALLVRLFSPECEPQNIGAYDKRK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACTTAGACGATTCTTAGGCTTTTCAGATGGTGAGCTCATGAGATCAGATGCTAAGCCTTGTTCACAGTTGATGAAACAGACTGCTGGGTTATGTACTGTTGGAGG
AGGACTTGCGTTCTGGATTCTTTGTAGATTACATTATGGTCTGTCAATACCTAGGAGTCTTCGTTGGGCAGCTTGTGGAGCAGTATCGATGAGTGCAACCTCGGCTTTGC
TTGTCCGATTGTTTAGTCCAGAATGTGAACCCCAGAATATAGGTGCTTATGACAAAAGGAAAGTTGAGCTAACTGATGTAACTAGTTTTGGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCACTTAGACGATTCTTAGGCTTTTCAGATGGTGAGCTCATGAGATCAGATGCTAAGCCTTGTTCACAGTTGATGAAACAGACTGCTGGGTTATGTACTGTTGGAGG
AGGACTTGCGTTCTGGATTCTTTGTAGATTACATTATGGTCTGTCAATACCTAGGAGTCTTCGTTGGGCAGCTTGTGGAGCAGTATCGATGAGTGCAACCTCGGCTTTGC
TTGTCCGATTGTTTAGTCCAGAATGTGAACCCCAGAATATAGGTGCTTATGACAAAAGGAAAGTTGAGCTAACTGATGTAACTAGTTTTGGCTAG
Protein sequenceShow/hide protein sequence
MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGLSIPRSLRWAACGAVSMSATSALLVRLFSPECEPQNIGAYDKRKVELTDVTSFG