CuGenDBv2

Gene ID	CaUC02G041060
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Lipoxygenase
Genome location	Ciama_Chr02:28239604..28243299
RNA-Seq Expression	CaUC02G041060
Synteny	CaUC02G041060
Gene Ontology terms	GO:0006629 - lipid metabolic process (biological process) GO:0019752 - carboxylic acid metabolic process (biological process) GO:0005515 - protein binding (molecular function) GO:0016491 - oxidoreductase activity (molecular function)
InterPro domains	IPR036392 - PLAT/LH2 domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6599220.1 putative linoleate 9S-lipoxygenase 5, partial [Cucurbita argyrosperma subsp. sororia]

1.3e-19

59.81

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Query:  DAFKTTGNALRTIGDVAGFVINARGSFMDR--------------KVILMRSNVLDFTQLHSIVLDGFTELLGSGIVLQLVSASELN------YGK-RRAT
        DA KTTG+ALRT GDVAG V+NA G+ +DR              KVILMRSNVLDF + HS VLDGFTE+LGSGIVLQLVSA+ ++       GK  R  
Subjt:  DAFKTTGNALRTIGDVAGFVINARGSFMDR--------------KVILMRSNVLDFTQLHSIVLDGFTELLGSGIVLQLVSASELN------YGK-RRAT

Query:  YLERWLT
        YLERWLT
Subjt:  YLERWLT

XP_022946174.1 probable linoleate 9S-lipoxygenase 5 [Cucurbita moschata]

5.8e-20

60.75

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Query:  DAFKTTGNALRTIGDVAGFVINARGSFMDR--------------KVILMRSNVLDFTQLHSIVLDGFTELLGSGIVLQLVSASELN------YGK-RRAT
        DA KTTG+ALRT GDVAG V+NA G+ +DR              KVILMRSNVLDF + HS VLDGFTELLGSGIVLQLVSA+ ++       GK  R  
Subjt:  DAFKTTGNALRTIGDVAGFVINARGSFMDR--------------KVILMRSNVLDFTQLHSIVLDGFTELLGSGIVLQLVSASELN------YGK-RRAT

Query:  YLERWLT
        YLERWLT
Subjt:  YLERWLT

XP_022999017.1 probable linoleate 9S-lipoxygenase 5 [Cucurbita maxima]

5.8e-20

60.75

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Query:  DAFKTTGNALRTIGDVAGFVINARGSFMDR--------------KVILMRSNVLDFTQLHSIVLDGFTELLGSGIVLQLVSASELN------YGK-RRAT
        DA KTTG+ALRT GDVAG V+NA G+ +DR              KVILMRSNVLDF + HS VLDGFTELLGSGIVLQLVSA+ ++       GK  R  
Subjt:  DAFKTTGNALRTIGDVAGFVINARGSFMDR--------------KVILMRSNVLDFTQLHSIVLDGFTELLGSGIVLQLVSASELN------YGK-RRAT

Query:  YLERWLT
        YLERWLT
Subjt:  YLERWLT

XP_023545238.1 probable linoleate 9S-lipoxygenase 5 [Cucurbita pepo subsp. pepo]

5.8e-20

60.75

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Query:  DAFKTTGNALRTIGDVAGFVINARGSFMDR--------------KVILMRSNVLDFTQLHSIVLDGFTELLGSGIVLQLVSASELN------YGK-RRAT
        DA KTTG+ALRT GDVAG V+NA G+ +DR              KVILMRSNVLDF + HS VLDGFTELLGSGIVLQLVSA+ ++       GK  R  
Subjt:  DAFKTTGNALRTIGDVAGFVINARGSFMDR--------------KVILMRSNVLDFTQLHSIVLDGFTELLGSGIVLQLVSASELN------YGK-RRAT

Query:  YLERWLT
        YLERWLT
Subjt:  YLERWLT

XP_038890817.1 probable linoleate 9S-lipoxygenase 5 [Benincasa hispida]

5.2e-21

61.68

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Query:  DAFKTTGNALRTIGDVAGFVINARGSFMDR--------------KVILMRSNVLDFTQLHSIVLDGFTELLGSGIVLQLVSASELN------YGK-RRAT
        DA KTTG+ALRT GDVAG VINA G+F+DR              K+I+MR+NVLDFT+ HS VLDGFTELLGSGIVLQLVSA+E++       GK  R  
Subjt:  DAFKTTGNALRTIGDVAGFVINARGSFMDR--------------KVILMRSNVLDFTQLHSIVLDGFTELLGSGIVLQLVSASELN------YGK-RRAT

Query:  YLERWLT
        YLERWLT
Subjt:  YLERWLT

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E045 probable linoleate 9S-lipoxygenase 5 isoform X2

3.1e-19

56.07

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Query:  DAFKTTGNALRTIGDVAGFVINARGSFMDR--------------KVILMRSNVLDFTQLHSIVLDGFTELLGSGIVLQLVSASELN------YGK-RRAT
        DA K TGN LRT GDVAG ++NA G+F+DR              KVIL+RSNVL+ T+ HS +LDGFTELLGSGIV+QLVSA+E++       GK  R  
Subjt:  DAFKTTGNALRTIGDVAGFVINARGSFMDR--------------KVILMRSNVLDFTQLHSIVLDGFTELLGSGIVLQLVSASELN------YGK-RRAT

Query:  YLERWLT
        YLE+WLT
Subjt:  YLERWLT

A0A6J1G308 Lipoxygenase

8.2e-20

57.66

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Query:  DMFEDAFKTTGNALRTIGDVAGFVINARGSFMDR--------------KVILMRSNVLDFTQLHSIVLDGFTELLGSGIVLQLVSASELN------YGK-
        ++  DA KTTG+ LRT GDVAG V+NA G+ +DR              KVILMRSNVLDFT+LHS VLDG TELLGSGIVL+LVSA+ ++       GK 
Subjt:  DMFEDAFKTTGNALRTIGDVAGFVINARGSFMDR--------------KVILMRSNVLDFTQLHSIVLDGFTELLGSGIVLQLVSASELN------YGK-

Query:  RRATYLERWLT
         R  YLERWLT
Subjt:  RRATYLERWLT

A0A6J1G320 Lipoxygenase

2.8e-20

60.75

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Query:  DAFKTTGNALRTIGDVAGFVINARGSFMDR--------------KVILMRSNVLDFTQLHSIVLDGFTELLGSGIVLQLVSASELN------YGK-RRAT
        DA KTTG+ALRT GDVAG V+NA G+ +DR              KVILMRSNVLDF + HS VLDGFTELLGSGIVLQLVSA+ ++       GK  R  
Subjt:  DAFKTTGNALRTIGDVAGFVINARGSFMDR--------------KVILMRSNVLDFTQLHSIVLDGFTELLGSGIVLQLVSASELN------YGK-RRAT

Query:  YLERWLT
        YLERWLT
Subjt:  YLERWLT

A0A6J1G324 Lipoxygenase

8.2e-20

57.66

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Query:  DMFEDAFKTTGNALRTIGDVAGFVINARGSFMDR--------------KVILMRSNVLDFTQLHSIVLDGFTELLGSGIVLQLVSASELN------YGK-
        ++  DA KTTG+ LRT GDVAG V+NA G+ +DR              KVILMRSNVLDFT+LHS VLDG TELLGSGIVL+LVSA+ ++       GK 
Subjt:  DMFEDAFKTTGNALRTIGDVAGFVINARGSFMDR--------------KVILMRSNVLDFTQLHSIVLDGFTELLGSGIVLQLVSASELN------YGK-

Query:  RRATYLERWLT
         R  YLERWLT
Subjt:  RRATYLERWLT

A0A6J1K9N0 Lipoxygenase

2.8e-20

60.75

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Query:  DAFKTTGNALRTIGDVAGFVINARGSFMDR--------------KVILMRSNVLDFTQLHSIVLDGFTELLGSGIVLQLVSASELN------YGK-RRAT
        DA KTTG+ALRT GDVAG V+NA G+ +DR              KVILMRSNVLDF + HS VLDGFTELLGSGIVLQLVSA+ ++       GK  R  
Subjt:  DAFKTTGNALRTIGDVAGFVINARGSFMDR--------------KVILMRSNVLDFTQLHSIVLDGFTELLGSGIVLQLVSASELN------YGK-RRAT

Query:  YLERWLT
        YLERWLT
Subjt:  YLERWLT

SwissProt top hits

e value

%identity

Alignment

P29250 Linoleate 9S-lipoxygenase 2

5.5e-05

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Query:  IGDVAGFVINARGSFMDRKVILMRSNVLDFTQLHSIVLDGFTELLGSGIVLQLVSAS--ELNYGKR----RATYLERWLT
        +G + G +   + + +   ++LMR N LD     + V+DG +E LG G+  QLVS+S  + N G R        LE+WLT
Subjt:  IGDVAGFVINARGSFMDRKVILMRSNVLDFTQLHSIVLDGFTELLGSGIVLQLVSAS--ELNYGKR----RATYLERWLT

P38416 Linoleate 9S-lipoxygenase B

3.2e-05

47.54

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Query:  KVILMRSNVLDFTQLHSIVLDGFTELLGSGIVLQLVSASELNY----GK-RRATYLERWLT
        +VILM+ NVLDF  + + V+DG ++LLG  + +QL+S S +NY    GK     YLE WLT
Subjt:  KVILMRSNVLDFTQLHSIVLDGFTELLGSGIVLQLVSASELNY----GK-RRATYLERWLT

Q43191 Probable linoleate 9S-lipoxygenase 5

9.3e-05

39.34

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Query:  VILMRSNVLDFTQLHSIVLDGFTELLGSGIVLQLVSASELNYG------KRRATYLERWLT
        ++LM+ NVLDF  +++ +LDG  E LG  + LQL+S    + G      +    YLE+WLT
Subjt:  VILMRSNVLDFTQLHSIVLDGFTELLGSGIVLQLVSASELNYG------KRRATYLERWLT

Arabidopsis top hits

e value

%identity

Alignment

AT1G55020.1 lipoxygenase 1

8.1e-04

39.34

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Query:  VILMRSNVLDFTQLHSIVLDGFTELLGSGIVLQLVSA--SELNYGKR----RATYLERWLT
        V+LM+ NVLDF   ++  LD   E LG+ I L+LVS+  ++   G +    +A +LE W+T
Subjt:  VILMRSNVLDFTQLHSIVLDGFTELLGSGIVLQLVSA--SELNYGKR----RATYLERWLT

Sequences

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CDS sequence

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ATGTTCTTCTGTTTCTTTCGAGCCAAATGCAGTGCAGAGATAGGCAGCGATGAGATTGCTCCAAAGGACTCTAGCTTTAGTGTTCATTTTGAGGTATTTCCATTCCTCAA
TCGATCAGGATTAATCCACCTTGATACCGGAAATGGTAGACTCCTGGACATTGATTTTAAAGCCAGAGGCTTCCTCGAAGACATTAATGATATGTTTGAGGATGCCTTTA
AAACCACCGGCAACGCCCTTAGAACGATTGGGGACGTTGCCGGGTTCGTTATAAATGCTAGAGGGAGCTTTATGGACCGGAAAGTGATTCTGATGAGAAGCAATGTCTTA
GACTTCACTCAGCTTCATTCTATTGTTCTTGATGGTTTCACTGAGCTGTTGGGCAGTGGAATTGTACTGCAACTTGTGAGTGCTTCTGAGCTAAATTATGGAAAAAGGCG
AGCTACATATTTGGAGAGGTGGCTGACTTATGCCCAGCGGTGTTTGCTGGAGAGTCAGTGTTTGAAGTCAACTTTGAATGTGAAGATGAATTTGGATATCCAGGAGCTTT
CTATATAA

mRNA sequence

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Protein sequence

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MFFCFFRAKCSAEIGSDEIAPKDSSFSVHFEVFPFLNRSGLIHLDTGNGRLLDIDFKARGFLEDINDMFEDAFKTTGNALRTIGDVAGFVINARGSFMDRKVILMRSNVL
DFTQLHSIVLDGFTELLGSGIVLQLVSASELNYGKRRATYLERWLTYAQRCLLESQCLKSTLNVKMNLDIQELSI

CaUC02G041060 (gene) of Watermelon (USVL246-FR2) v1 genome