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CaUC02G042140 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC02G042140
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionAuxin-responsive protein
Genome locationCiama_Chr02:29574822..29575399
RNA-Seq ExpressionCaUC02G042140
SyntenyCaUC02G042140
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009734 - auxin-activated signaling pathway (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR000270 - PB1 domain
IPR003311 - AUX/IAA protein
IPR033389 - AUX/IAA domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599310.1 Auxin-responsive protein IAA16, partial [Cucurbita argyrosperma subsp. sororia]6.1e-2483.33Show/hide
Query:  RLVGWPPVRSSRKNLGAARNGGDD----GGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIG
        ++VGWPPVRSSRKNLGA R GG+D    GGASFVKVS+DGAPYLRKVDLKLY+SYK+LSHALAKMFSSFTIG
Subjt:  RLVGWPPVRSSRKNLGAARNGGDD----GGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIG

XP_022999097.1 auxin-responsive protein IAA14-like [Cucurbita maxima]1.3e-2383.33Show/hide
Query:  RLVGWPPVRSSRKNLGAARNGGDD----GGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIG
        ++VGWPPVRSSRKNLGA R GG+D    GGASFVKVS+DGAPYLRKVDLKLY SYK+LSHALAKMFSSFTIG
Subjt:  RLVGWPPVRSSRKNLGAARNGGDD----GGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIG

XP_023521166.1 auxin-responsive protein IAA16-like isoform X1 [Cucurbita pepo subsp. pepo]2.7e-2486.96Show/hide
Query:  RLVGWPPVRSSRKNLGAARNGGDD-GGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIG
        ++VGWPPVRSSRKNLGA R GG+D GGASFVKVS+DGAPYLRKVDLKLY+SYK+LSHALAKMFSSFTIG
Subjt:  RLVGWPPVRSSRKNLGAARNGGDD-GGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIG

XP_023521167.1 auxin-responsive protein IAA16-like isoform X2 [Cucurbita pepo subsp. pepo]2.7e-2486.96Show/hide
Query:  RLVGWPPVRSSRKNLGAARNGGDD-GGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIG
        ++VGWPPVRSSRKNLGA R GG+D GGASFVKVS+DGAPYLRKVDLKLY+SYK+LSHALAKMFSSFTIG
Subjt:  RLVGWPPVRSSRKNLGAARNGGDD-GGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIG

XP_038890917.1 auxin-responsive protein IAA16-like [Benincasa hispida]1.0e-2691.18Show/hide
Query:  RLVGWPPVRSSRKNLGAARNGGDDGGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIG
        ++VGWPPVRSSRKNLGAARNGGDDGGASFVKVS+DGAPYLRKVDLKLY SYK+LSHALA MFSSFTIG
Subjt:  RLVGWPPVRSSRKNLGAARNGGDDGGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIG

TrEMBL top hitse value%identityAlignment
A0A1S3C1R1 Auxin-responsive protein8.5e-2482.86Show/hide
Query:  RLVGWPPVRSSRKNLG--AARNGGDDGGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIG
        ++VGWPPVRSSRKNLG  ++R GGD+GG SFVKVS+DGAPYLRKVDLKLY SYK+LSHALAKMFSSFTIG
Subjt:  RLVGWPPVRSSRKNLG--AARNGGDDGGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIG

A0A1S3C1R6 Auxin-responsive protein8.5e-2482.86Show/hide
Query:  RLVGWPPVRSSRKNLG--AARNGGDDGGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIG
        ++VGWPPVRSSRKNLG  ++R GGD+GG SFVKVS+DGAPYLRKVDLKLY SYK+LSHALAKMFSSFTIG
Subjt:  RLVGWPPVRSSRKNLG--AARNGGDDGGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIG

A0A6J1CMJ1 Auxin-responsive protein8.5e-2485.51Show/hide
Query:  RLVGWPPVRSSRKNLGAARNGGDD-GGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIG
        ++VGWPPVRSSRKNL A RNGGD+ GGASFVKVS+DGAPYLRKVDLKLY+SYK+LSHALA+MFSSFTIG
Subjt:  RLVGWPPVRSSRKNLGAARNGGDD-GGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIG

A0A6J1G2X6 Auxin-responsive protein2.5e-2380.28Show/hide
Query:  RLVGWPPVRSSRKNLGAARNGGDD---GGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIG
        ++VGWPPVRSSRKNLGA R GG+D   GG +FVKVS+DGAPYLRKVDLKLY SYK+LSHALAKMFSSFT+G
Subjt:  RLVGWPPVRSSRKNLGAARNGGDD---GGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIG

A0A6J1K9W5 Auxin-responsive protein6.5e-2483.33Show/hide
Query:  RLVGWPPVRSSRKNLGAARNGGDD----GGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIG
        ++VGWPPVRSSRKNLGA R GG+D    GGASFVKVS+DGAPYLRKVDLKLY SYK+LSHALAKMFSSFTIG
Subjt:  RLVGWPPVRSSRKNLGAARNGGDD----GGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIG

SwissProt top hitse value%identityAlignment
P0C132 Auxin-responsive protein IAA302.7e-1963.86Show/hide
Query:  RLVGWPPVRSSRKNL---------GAARNGGDDGG-----ASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGN
        ++VGWPPVRS RKN+          AA  GGD  G     A+FVKVS+DGAPYLRKVDLK+Y SY ELS AL KMFSSFTIGN
Subjt:  RLVGWPPVRSSRKNL---------GAARNGGDDGG-----ASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGN

P13089 Auxin-induced protein AUX283.0e-1863.16Show/hide
Query:  RLVGWPPVRSSRKN-LGAARNGGDDG------GASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGN
        ++VGWPPVRS RKN L   ++ G++        ASFVKVS+DGAPYLRKVDLK+Y SY+ELS +L KMFSSFT GN
Subjt:  RLVGWPPVRSSRKN-LGAARNGGDDG------GASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGN

P93830 Auxin-responsive protein IAA172.0e-1761.43Show/hide
Query:  RLVGWPPVRSSRKN--LGAARNGGDDGGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIG
        ++VGWPPVRS RKN  +   ++ G    A+FVKVS+DGAPYLRK+DL++Y SY ELS+AL+ MFSSFT+G
Subjt:  RLVGWPPVRSSRKN--LGAARNGGDDGGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIG

Q38825 Auxin-responsive protein IAA76.7e-1855.81Show/hide
Query:  RLVGWPPVRSSRKNL----------------GAARNGGDDGGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGNF
        ++VGWPPVR+ RKN+                 A   GG   GA  VKVS+DGAPYLRKVDLK+Y SY++LS ALAKMFSSFT+GN+
Subjt:  RLVGWPPVRSSRKNL----------------GAARNGGDDGGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGNF

Q38832 Auxin-responsive protein IAA141.0e-1860.26Show/hide
Query:  RLVGWPPVRSSRKNLGAARNGGD--------DGGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGNF
        ++VGWPPVR+ RKN+ A +  G+         G  +FVKVS+DGAPYLRKVDLK+Y SYK+LS ALAKMFSSFT+G++
Subjt:  RLVGWPPVRSSRKNLGAARNGGD--------DGGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGNF

Arabidopsis top hitse value%identityAlignment
AT1G04250.1 AUX/IAA transcriptional regulator family protein1.4e-1861.43Show/hide
Query:  RLVGWPPVRSSRKN--LGAARNGGDDGGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIG
        ++VGWPPVRS RKN  +   ++ G    A+FVKVS+DGAPYLRK+DL++Y SY ELS+AL+ MFSSFT+G
Subjt:  RLVGWPPVRSSRKN--LGAARNGGDDGGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIG

AT3G04730.1 indoleacetic acid-induced protein 166.9e-1851.09Show/hide
Query:  RLVGWPPVRSSRKNL-------------GAARNGGDDGGAS---------FVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGNF
        ++VGWPPVRS RKN+             G  +  G  G  S         +VKVS+DGAPYLRK+DLKLY +Y++LS+AL+KMFSSFTIGN+
Subjt:  RLVGWPPVRSSRKNL-------------GAARNGGDDGGAS---------FVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGNF

AT3G23050.1 indole-3-acetic acid 74.8e-1955.81Show/hide
Query:  RLVGWPPVRSSRKNL----------------GAARNGGDDGGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGNF
        ++VGWPPVR+ RKN+                 A   GG   GA  VKVS+DGAPYLRKVDLK+Y SY++LS ALAKMFSSFT+GN+
Subjt:  RLVGWPPVRSSRKNL----------------GAARNGGDDGGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGNF

AT3G23050.2 indole-3-acetic acid 74.8e-1955.81Show/hide
Query:  RLVGWPPVRSSRKNL----------------GAARNGGDDGGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGNF
        ++VGWPPVR+ RKN+                 A   GG   GA  VKVS+DGAPYLRKVDLK+Y SY++LS ALAKMFSSFT+GN+
Subjt:  RLVGWPPVRSSRKNL----------------GAARNGGDDGGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGNF

AT4G14550.1 indole-3-acetic acid inducible 147.4e-2060.26Show/hide
Query:  RLVGWPPVRSSRKNLGAARNGGD--------DGGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGNF
        ++VGWPPVR+ RKN+ A +  G+         G  +FVKVS+DGAPYLRKVDLK+Y SYK+LS ALAKMFSSFT+G++
Subjt:  RLVGWPPVRSSRKNLGAARNGGD--------DGGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGNF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCTAATAGACTTGTGGGTTGGCCACCAGTTAGATCATCAAGGAAGAATTTGGGAGCGGCGAGGAACGGCGGCGATGACGGCGGCGCGTCGTTCGTAAAAGTTAG
CGTGGACGGTGCGCCTTATTTACGGAAGGTGGATTTGAAGCTATACGCCAGCTACAAAGAACTCTCTCACGCCCTTGCAAAGATGTTTAGCTCCTTCACTATTGGTAATT
TTTATTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATTCTAATAGACTTGTGGGTTGGCCACCAGTTAGATCATCAAGGAAGAATTTGGGAGCGGCGAGGAACGGCGGCGATGACGGCGGCGCGTCGTTCGTAAAAGTTAG
CGTGGACGGTGCGCCTTATTTACGGAAGGTGGATTTGAAGCTATACGCCAGCTACAAAGAACTCTCTCACGCCCTTGCAAAGATGTTTAGCTCCTTCACTATTGGTAATT
TTTATTTTTAA
Protein sequenceShow/hide protein sequence
MDSNRLVGWPPVRSSRKNLGAARNGGDDGGASFVKVSVDGAPYLRKVDLKLYASYKELSHALAKMFSSFTIGNFYF