; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC02G042360 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC02G042360
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionVQ domain-containing protein
Genome locationCiama_Chr02:29807476..29807889
RNA-Seq ExpressionCaUC02G042360
SyntenyCaUC02G042360
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063579.1 VQ motif-containing protein [Cucumis melo var. makuwa]7.8e-3866.44Show/hide
Query:  MENL-TSLPNNPDHQKITQIPNKPTI--DQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDA-FHQSLQEFNQVFY--PPTSSLAVASFDPK
        MENL T+LP +  H+K++Q  NKPT    QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHS   DA F QS+Q+FN  FY  PP+SS    SFDP+
Subjt:  MENL-TSLPNNPDHQKITQIPNKPTI--DQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDA-FHQSLQEFNQVFY--PPTSSLAVASFDPK

Query:  DYCAFSSTGHVFDPTGVA---EGHYWRGEMEGSFSGFQASSCVNIW
        D C  S++G V     +    EG YWRGEMEGSFSGFQASSCVNIW
Subjt:  DYCAFSSTGHVFDPTGVA---EGHYWRGEMEGSFSGFQASSCVNIW

KAE8651551.1 hypothetical protein Csa_019210 [Cucumis sativus]2.0e-3869.72Show/hide
Query:  MENLTSLPNNPDHQKITQIPNKPTID-QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQSLQEFNQVFY-PPTSSLAVASFDPKDYCA
        MEN T+LP+N  H+K++Q+ NK TID QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHS   D   QS+Q+FN VFY PP SS    SFDPKD   
Subjt:  MENLTSLPNNPDHQKITQIPNKPTID-QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQSLQEFNQVFY-PPTSSLAVASFDPKDYCA

Query:  FSSTGHV-FDPTGVA-EGHYWRGEME-GSFSGFQASSCVNIW
         S++G V FD      EG YWRGEME GSFSGFQASSCVNIW
Subjt:  FSSTGHV-FDPTGVA-EGHYWRGEME-GSFSGFQASSCVNIW

KAG6586326.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]6.4e-2456.93Show/hide
Query:  MENLTSLPNNPDHQKITQIPNKPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQSLQEFNQVFYPPTSSLAVASFDPKDYCAFS
        MENL SLPN+  H+K+     + T+  NKPIKVKYISSPMMVKA+NE EFRAIVQKLTGQHS+ DDAF +S QEFN  F PP+S+  V SFD KD C   
Subjt:  MENLTSLPNNPDHQKITQIPNKPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQSLQEFNQVFYPPTSSLAVASFDPKDYCAFS

Query:  STGHVFDPTGVAEGHYWRGEMEGSFSGFQASSCVNIW
         +   +DP  V       GEM+ S  GFQA S V++W
Subjt:  STGHVFDPTGVAEGHYWRGEMEGSFSGFQASSCVNIW

XP_022938305.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata]2.0e-2558.39Show/hide
Query:  MENLTSLPNNPDHQKITQIPNKPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQSLQEFNQVFYPPTSSLAVASFDPKDYCAFS
        MENL SLPN+  H+K+     + T+  NKPIKVKYISSPMMVKANNE EFRAIVQKLTGQHS+ DDAF +S QEFN  F PP+S+  V SFD KD C   
Subjt:  MENLTSLPNNPDHQKITQIPNKPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQSLQEFNQVFYPPTSSLAVASFDPKDYCAFS

Query:  STGHVFDPTGVAEGHYWRGEMEGSFSGFQASSCVNIW
         +   +DP GV       GEM+ S  GFQA S V++W
Subjt:  STGHVFDPTGVAEGHYWRGEMEGSFSGFQASSCVNIW

XP_038877668.1 sigma factor binding protein 1, chloroplastic-like [Benincasa hispida]4.7e-3573.45Show/hide
Query:  IDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQSLQEFNQVFYPPTSSLAVASFDPKDYCAFSSTGHVFDPTGVAEGHYWRGEMEGS
        +DQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQH SP DAF QS ++FNQVFYPP SS+A  SFDPKD  A +S   +FD         W+GEMEGS
Subjt:  IDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQSLQEFNQVFYPPTSSLAVASFDPKDYCAFSSTGHVFDPTGVAEGHYWRGEMEGS

Query:  FSGFQASSCVNIW
        FSGFQASSCVN W
Subjt:  FSGFQASSCVNIW

TrEMBL top hitse value%identityAlignment
A0A0A0LFF9 VQ domain-containing protein9.9e-3969.72Show/hide
Query:  MENLTSLPNNPDHQKITQIPNKPTID-QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQSLQEFNQVFY-PPTSSLAVASFDPKDYCA
        MEN T+LP+N  H+K++Q+ NK TID QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHS   D   QS+Q+FN VFY PP SS    SFDPKD   
Subjt:  MENLTSLPNNPDHQKITQIPNKPTID-QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQSLQEFNQVFY-PPTSSLAVASFDPKDYCA

Query:  FSSTGHV-FDPTGVA-EGHYWRGEME-GSFSGFQASSCVNIW
         S++G V FD      EG YWRGEME GSFSGFQASSCVNIW
Subjt:  FSSTGHV-FDPTGVA-EGHYWRGEME-GSFSGFQASSCVNIW

A0A5A7VDH6 VQ motif-containing protein3.8e-3866.44Show/hide
Query:  MENL-TSLPNNPDHQKITQIPNKPTI--DQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDA-FHQSLQEFNQVFY--PPTSSLAVASFDPK
        MENL T+LP +  H+K++Q  NKPT    QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHS   DA F QS+Q+FN  FY  PP+SS    SFDP+
Subjt:  MENL-TSLPNNPDHQKITQIPNKPTI--DQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDA-FHQSLQEFNQVFY--PPTSSLAVASFDPK

Query:  DYCAFSSTGHVFDPTGVA---EGHYWRGEMEGSFSGFQASSCVNIW
        D C  S++G V     +    EG YWRGEMEGSFSGFQASSCVNIW
Subjt:  DYCAFSSTGHVFDPTGVA---EGHYWRGEMEGSFSGFQASSCVNIW

A0A6J1CME4 sigma factor binding protein 1, chloroplastic-like1.3e-1758.41Show/hide
Query:  KPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQSL----QEFNQVFYPPTSSLAVASFDPKDYCAFSSTGHVFDPTGVAEGHYWRGEMEGS
        KPIKVKYIS+PMMVKAN+ESEFR IVQ+LTGQ +SPDDAF        +E N  FYPP  S AV S DPK Y    S G V +   + EG + + EM+G 
Subjt:  KPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQSL----QEFNQVFYPPTSSLAVASFDPKDYCAFSSTGHVFDPTGVAEGHYWRGEMEGS

Query:  FSGFQASSCVNIW
        FSGFQA SCVN +
Subjt:  FSGFQASSCVNIW

A0A6J1FJE0 sigma factor binding protein 1, chloroplastic-like9.6e-2658.39Show/hide
Query:  MENLTSLPNNPDHQKITQIPNKPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQSLQEFNQVFYPPTSSLAVASFDPKDYCAFS
        MENL SLPN+  H+K+     + T+  NKPIKVKYISSPMMVKANNE EFRAIVQKLTGQHS+ DDAF +S QEFN  F PP+S+  V SFD KD C   
Subjt:  MENLTSLPNNPDHQKITQIPNKPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQSLQEFNQVFYPPTSSLAVASFDPKDYCAFS

Query:  STGHVFDPTGVAEGHYWRGEMEGSFSGFQASSCVNIW
         +   +DP GV       GEM+ S  GFQA S V++W
Subjt:  STGHVFDPTGVAEGHYWRGEMEGSFSGFQASSCVNIW

W9RT96 VQ domain-containing protein2.2e-0939.61Show/hide
Query:  NNPDHQKITQIPNKPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSS----PDDAFH-QSLQEFNQVF----------------YPPTSSLA
        NNP H +  + P+K    + KPIK+KYISSPMMV+ANN SEFRAIVQ+LTG++S+     DD  H +SL     +F                Y P  S  
Subjt:  NNPDHQKITQIPNKPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSS----PDDAFH-QSLQEFNQVF----------------YPPTSSLA

Query:  VASFDPKDYCAFSSTGHVFDPTGVA-------EGHYWRGEMEGSFSGFQASSCV
         A  D +D+      G  F    V+        G +WR E+  SF+GFQ SSC+
Subjt:  VASFDPKDYCAFSSTGHVFDPTGVA-------EGHYWRGEMEGSFSGFQASSCV

SwissProt top hitse value%identityAlignment
Q9LDH1 Sigma factor binding protein 1, chloroplastic8.2e-0633.9Show/hide
Query:  KPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHS---SPDDAFHQSLQEFNQVFYPPTSSLAVASFDPKDYCAFSSTGHVFDPTGVAEGHYWR
        K T   NKPIKV+YIS+PM V+    S+FR +VQ+LTGQ +    P+  +  S  + N    PP  +LA      + +    S    ++P   AE  +  
Subjt:  KPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHS---SPDDAFHQSLQEFNQVFYPPTSSLAVASFDPKDYCAFSSTGHVFDPTGVAEGHYWR

Query:  GEMEGSFSGFQASSCVNI
         +M   FSGF ++   N+
Subjt:  GEMEGSFSGFQASSCVNI

Arabidopsis top hitse value%identityAlignment
AT3G56710.1 sigma factor binding protein 15.8e-0733.9Show/hide
Query:  KPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHS---SPDDAFHQSLQEFNQVFYPPTSSLAVASFDPKDYCAFSSTGHVFDPTGVAEGHYWR
        K T   NKPIKV+YIS+PM V+    S+FR +VQ+LTGQ +    P+  +  S  + N    PP  +LA      + +    S    ++P   AE  +  
Subjt:  KPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHS---SPDDAFHQSLQEFNQVFYPPTSSLAVASFDPKDYCAFSSTGHVFDPTGVAEGHYWR

Query:  GEMEGSFSGFQASSCVNI
         +M   FSGF ++   N+
Subjt:  GEMEGSFSGFQASSCVNI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAATCTTACAAGCCTTCCTAATAATCCTGATCACCAAAAAATTACCCAAATTCCCAACAAACCAACAATTGATCAAAACAAGCCTATCAAAGTGAAGTACATTTC
TAGTCCCATGATGGTGAAAGCCAACAACGAGTCTGAATTTCGTGCCATTGTTCAAAAGCTCACCGGCCAGCACTCCTCCCCTGATGATGCTTTTCATCAATCACTTCAAG
AGTTTAACCAAGTTTTTTATCCCCCGACGTCGTCCCTGGCCGTGGCTTCTTTCGACCCTAAGGATTACTGTGCTTTTTCGTCCACCGGTCATGTCTTTGATCCAACCGGA
GTCGCCGAAGGCCATTATTGGCGGGGTGAAATGGAAGGTTCTTTTTCTGGGTTTCAAGCTTCTTCTTGTGTGAATATTTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAATCTTACAAGCCTTCCTAATAATCCTGATCACCAAAAAATTACCCAAATTCCCAACAAACCAACAATTGATCAAAACAAGCCTATCAAAGTGAAGTACATTTC
TAGTCCCATGATGGTGAAAGCCAACAACGAGTCTGAATTTCGTGCCATTGTTCAAAAGCTCACCGGCCAGCACTCCTCCCCTGATGATGCTTTTCATCAATCACTTCAAG
AGTTTAACCAAGTTTTTTATCCCCCGACGTCGTCCCTGGCCGTGGCTTCTTTCGACCCTAAGGATTACTGTGCTTTTTCGTCCACCGGTCATGTCTTTGATCCAACCGGA
GTCGCCGAAGGCCATTATTGGCGGGGTGAAATGGAAGGTTCTTTTTCTGGGTTTCAAGCTTCTTCTTGTGTGAATATTTGGTGA
Protein sequenceShow/hide protein sequence
MENLTSLPNNPDHQKITQIPNKPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQSLQEFNQVFYPPTSSLAVASFDPKDYCAFSSTGHVFDPTG
VAEGHYWRGEMEGSFSGFQASSCVNIW