CuGenDBv2

Gene ID	CaUC02G044170
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	50S ribosomal protein L20
Genome location	Ciama_Chr02:31969119..31973273
RNA-Seq Expression	CaUC02G044170
Synteny	CaUC02G044170
Gene Ontology terms	GO:0000027 - ribosomal large subunit assembly (biological process) GO:0006412 - translation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR005813 - Ribosomal protein L20 IPR035566 - Ribosomal protein L20, C-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004139908.1 uncharacterized protein LOC101216644 [Cucumis sativus]

3.7e-63

99.2

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDAASMIV
        ISRNAFPGNKNVVFPPKKDAASMIV
Subjt:  ISRNAFPGNKNVVFPPKKDAASMIV

XP_008456292.1 PREDICTED: 50S ribosomal protein L20 [Cucumis melo]

2.2e-63

100

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDAASMIV
        ISRNAFPGNKNVVFPPKKDAASMIV
Subjt:  ISRNAFPGNKNVVFPPKKDAASMIV

XP_022943497.1 uncharacterized protein LOC111448251 [Cucurbita moschata]

6.4e-63

99.2

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDAASMIV
        ISRNAFPGNKNVVFPPKKDA SMIV
Subjt:  ISRNAFPGNKNVVFPPKKDAASMIV

XP_022985864.1 uncharacterized protein LOC111483787 [Cucurbita maxima]

8.3e-63

98.4

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDAASMIV
        ISRNAFPGNKNVVFPPKKDA SM+V
Subjt:  ISRNAFPGNKNVVFPPKKDAASMIV

XP_038901625.1 50S ribosomal protein L20 [Benincasa hispida]

1.4e-62

98.4

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKG+RGRAKNCIRIARERVEK LQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDAASMIV
        ISRNAFPGNKNVVFPPKKDAASMIV
Subjt:  ISRNAFPGNKNVVFPPKKDAASMIV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KD68 50S ribosomal protein L20

1.8e-63

99.2

Show/hide

Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDAASMIV
        ISRNAFPGNKNVVFPPKKDAASMIV
Subjt:  ISRNAFPGNKNVVFPPKKDAASMIV

A0A1S4E159 50S ribosomal protein L20

1.1e-63

100

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDAASMIV
        ISRNAFPGNKNVVFPPKKDAASMIV
Subjt:  ISRNAFPGNKNVVFPPKKDAASMIV

A0A6J1FUI3 50S ribosomal protein L20

3.1e-63

99.2

Show/hide

Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDAASMIV
        ISRNAFPGNKNVVFPPKKDA SMIV
Subjt:  ISRNAFPGNKNVVFPPKKDAASMIV

A0A6J1JCG1 50S ribosomal protein L20

4.0e-63

98.4

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDAASMIV
        ISRNAFPGNKNVVFPPKKDA SM+V
Subjt:  ISRNAFPGNKNVVFPPKKDAASMIV

A0A6J1KY75 50S ribosomal protein L20

2.9e-61

94.4

Show/hide

Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKEN+QLNRKVLSELSMHEPYSFK+LVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDAASMIV
        ISRNAFPGNKNVVFPPKKD  S+++
Subjt:  ISRNAFPGNKNVVFPPKKDAASMIV

SwissProt top hits

e value

%identity

Alignment

B6IPJ8 50S ribosomal protein L20

7.9e-32

63.37

Show/hide

Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRN
        K+ KLAKG+RGR+  C RIA ERVEKAL+Y+YRDRRN+KRD R LWIQRINAG RLHG+ Y  FMHGL +  ++++RKVLS+++  EP SFKALV+ ++ 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRN

Query:  A
        A
Subjt:  A

Q11KK1 50S ribosomal protein L20

2.4e-28

56.07

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRN
        K+ K AKGF GR KN IRIA++ VEK+LQY+YRDR+N+KR+ R+LWIQRINA TR HG+ YG F+ GL K  ++++RKVL+++++HEP +F ALV  S+ 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRN

Query:  AFPGNKN
        +    KN
Subjt:  AFPGNKN

Q2GHR2 50S ribosomal protein L20

1.1e-28

60.4

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRN
        K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  R HG+ Y +F+HGL   NV LNRKVL++++++    FK +VD+ + 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRN

Query:  A
        A
Subjt:  A

Q3YSX0 50S ribosomal protein L20

2.2e-29

60.4

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRN
        K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  R HG+ Y +F+HGL   N+ LNRKVL++++++   +FK +VDI++ 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRN

Query:  A
        A
Subjt:  A

Q5FH69 50S ribosomal protein L20

2.4e-28

56.44

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRN
        K+ KLAKG+RGR+KNC R+A +RVEKALQY+YRDRRN+KR  RSLWI RINA  R +G+ Y +F++GL   N+ LNRK+L+++++H   +FK +VD+++ 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRN

Query:  A
        A
Subjt:  A

Arabidopsis top hits

e value

%identity

Alignment

AT1G16740.1 Ribosomal protein L20

3.1e-55

83.87

Show/hide

Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNK +IFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKR+MR LWI+RINAG+R HGVNYGNF+HGLMKEN+QLNRKVLSELSMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDAASMI
        +SR +FPGNKNVV   +K   S I
Subjt:  ISRNAFPGNKNVVFPPKKDAASMI

ATCG00660.1 ribosomal protein L20

1.1e-09

38.2

Show/hide

Query:  KDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGV--NYGNFMHGLMKENVQLNRKVLSELSM
        + K+   A  FRG      R   ++  +AL  ++RDR  +KRD R LWI RINA     GV  +Y  F+H L K+ + LNRK+L+++++
Subjt:  KDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGV--NYGNFMHGLMKENVQLNRKVLSELSM

Sequences

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CDS sequence

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ATGAACAAGGACAAGATATTTAAGCTAGCAAAGGGTTTCAGAGGCAGGGCCAAGAATTGCATAAGAATTGCCAGAGAGCGGGTGGAGAAGGCTCTCCAATATTCATACCG
GGACCGTCGTAATAAGAAGCGAGACATGCGCTCCCTTTGGATACAACGAATCAATGCTGGCACGCGCCTTCATGGGGTAAACTATGGCAATTTTATGCATGGGCTGATGA
AGGAGAACGTCCAACTAAATAGAAAAGTATTATCAGAGCTCTCAATGCACGAGCCTTACAGTTTCAAGGCCCTGGTAGACATCTCTCGTAATGCATTTCCTGGAAACAAG
AATGTAGTGTTTCCCCCCAAGAAGGATGCTGCCTCCATGATTGTTTAA

mRNA sequence

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CTTTGGGGAAGAAGAAGGGAAACCTAAACTCCTTCCGCTCACTCTCACGTGCTCCACTTCACGCCGTCTCCTGCCCCCTTTCAACAGCTCCGTGTCGCCGCCGTCTCTTT
CCCGTTCAATTCAGCCACCGCTGTCTGTCTTCCGCTCGCACTGCCGAAACCTCCCTCCTATCAGCTGTAGATCATAGCAAGGAAAAAAGATGAACAAGGACAAGATATTT
AAGCTAGCAAAGGGTTTCAGAGGCAGGGCCAAGAATTGCATAAGAATTGCCAGAGAGCGGGTGGAGAAGGCTCTCCAATATTCATACCGGGACCGTCGTAATAAGAAGCG
AGACATGCGCTCCCTTTGGATACAACGAATCAATGCTGGCACGCGCCTTCATGGGGTAAACTATGGCAATTTTATGCATGGGCTGATGAAGGAGAACGTCCAACTAAATA
GAAAAGTATTATCAGAGCTCTCAATGCACGAGCCTTACAGTTTCAAGGCCCTGGTAGACATCTCTCGTAATGCATTTCCTGGAAACAAGAATGTAGTGTTTCCCCCCAAG
AAGGATGCTGCCTCCATGATTGTTTAATGGATCGTTTACGAGTCCTCTAGATCTCCAGTTATATAGAAACAGACTAGGGATGTTTGTCTGGCTTATGATGAGAGTTGATG
GTTGTTGTTGAGCGTAATTCTTTTCATTTCTATTGTTGCGTTAATTCTCCAAATGTTGTCAGACACTGAAAGGCTTGTCCATTTGAAATGATAAAAGTTTCTTGGATGCT
TTGGTTTTAAATCCGCAATCAAGGATGTTATTTTGTTGCGACAAGTTTCTGCAGGACATTCAGTCAAATTTTGTCATAGGACAGGGATGGAATTGACTTATCATTAATTT
TTGTAAGATTTTCAGCTAAATGTTAATCATTATCGGGGAGATCCATTTTATTGG

Protein sequence

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MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNK
NVVFPPKKDAASMIV

CaUC02G044170 (gene) of Watermelon (USVL246-FR2) v1 genome