; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC02G044270 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC02G044270
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationCiama_Chr02:32071013..32095311
RNA-Seq ExpressionCaUC02G044270
SyntenyCaUC02G044270
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN65484.1 hypothetical protein VITISV_029474 [Vitis vinifera]3.1e-0926.7Show/hide
Query:  WKLKEIPRKFQFPKARVGPYSPYCVAQMHRWLSSKLYELQEVDPFPKARVGPYSPYCVAQ----------------MHRWLSSKLYELQEVDPGMKTLVF
        W+  +  RK QF KA++  ++     ++ +     L +L   D   +   G  S   +AQ                +H    +++  ++E D   +    
Subjt:  WKLKEIPRKFQFPKARVGPYSPYCVAQMHRWLSSKLYELQEVDPFPKARVGPYSPYCVAQ----------------MHRWLSSKLYELQEVDPGMKTLVF

Query:  STAARRRKSTITKILSRNGTSLLSDKDIKTEFLGFYSKLYTKDDNRCLIPTNLDWSPISASQVTDLECPFTEEEVFLAVSSLGTNKSPDPD
            RR +  I ++ + NG  + + + IK E L ++ KLYT           LDWSPIS      LE PFTEEE+F A+  +  +K+P PD
Subjt:  STAARRRKSTITKILSRNGTSLLSDKDIKTEFLGFYSKLYTKDDNRCLIPTNLDWSPISASQVTDLECPFTEEEVFLAVSSLGTNKSPDPD

KAA0056004.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.4e-0937.04Show/hide
Query:  MKTLVFSTAARRRKSTITKILSRNGTSLLSDKDIKTEFLGFYSKLYTKDDNRCLIPTNLDWSPISASQVTDLECPFTEEEVFLAVSSLGTNKSPDPDEVF
        +K  + S+++R++K  I+KI++ +G + L+D DI   F+  + ++YT + N  L   NLDW PIS +    L+ PF E E++L + S   NK+P PD  F
Subjt:  MKTLVFSTAARRRKSTITKILSRNGTSLLSDKDIKTEFLGFYSKLYTKDDNRCLIPTNLDWSPISASQVTDLECPFTEEEVFLAVSSLGTNKSPDPDEVF

Query:  PSAFLASS
           FL  S
Subjt:  PSAFLASS

RVX14115.1 Protein SWEETIE [Vitis vinifera]4.8e-1027.75Show/hide
Query:  WKLKEIPRKFQFPKARVGPYSPYCVAQMHRWLSSKLYELQEVDPFPKARVGPYSPYCVAQ----------------MHRWLSSKLYELQEVDPGMKTLVF
        WK  +  RK QF KA++  ++     ++ +     L +L   D   +   G  S   +AQ                +H    +++  ++E D   K    
Subjt:  WKLKEIPRKFQFPKARVGPYSPYCVAQMHRWLSSKLYELQEVDPFPKARVGPYSPYCVAQ----------------MHRWLSSKLYELQEVDPGMKTLVF

Query:  STAARRRKSTITKILSRNGTSLLSDKDIKTEFLGFYSKLYTKDDNRCLIPTNLDWSPISASQVTDLECPFTEEEVFLAVSSLGTNKSPDPD
            RR +  I ++ + NG  + + + IK E L ++ KLYT           LDWSPIS      LE PFTEEE+F A+  +  +K+P PD
Subjt:  STAARRRKSTITKILSRNGTSLLSDKDIKTEFLGFYSKLYTKDDNRCLIPTNLDWSPISASQVTDLECPFTEEEVFLAVSSLGTNKSPDPD

TYK11761.1 uncharacterized protein E5676_scaffold304G00810 [Cucumis melo var. makuwa]1.4e-0945.12Show/hide
Query:  FLGFYSKLYTKDDNRCLIPTNLDWSPISASQVTDLECPFTEEEVFLAVSSLGTNKSPDPDEVFPSAFLASSKAKDEYKQKKE
        FL FY   +TK      +P N++W PIS +   DLECPF+EEEVFLA+ SLG NKSPD      ++ +AS    D + + K+
Subjt:  FLGFYSKLYTKDDNRCLIPTNLDWSPISASQVTDLECPFTEEEVFLAVSSLGTNKSPDPDEVFPSAFLASSKAKDEYKQKKE

XP_023518084.1 uncharacterized protein LOC111781628 [Cucurbita pepo subsp. pepo]8.4e-1550.56Show/hide
Query:  AARRRKSTITKILSRNGTSLLSDKDIKTEFLGFYSKLYTKDDNRCLIPTNLDWSPISASQVTDLECPFTEEEVFLAVSSLGTNKSPDPD
        A ++RKSTI +ILS  G SL++  +I +EF+ FY+ LYTKD+  C  P +LDWSPI   Q   LE  FTEEEV  A+ +LG++K+  PD
Subjt:  AARRRKSTITKILSRNGTSLLSDKDIKTEFLGFYSKLYTKDDNRCLIPTNLDWSPISASQVTDLECPFTEEEVFLAVSSLGTNKSPDPD

TrEMBL top hitse value%identityAlignment
A0A438JYU3 Protein SWEETIE2.3e-1027.75Show/hide
Query:  WKLKEIPRKFQFPKARVGPYSPYCVAQMHRWLSSKLYELQEVDPFPKARVGPYSPYCVAQ----------------MHRWLSSKLYELQEVDPGMKTLVF
        WK  +  RK QF KA++  ++     ++ +     L +L   D   +   G  S   +AQ                +H    +++  ++E D   K    
Subjt:  WKLKEIPRKFQFPKARVGPYSPYCVAQMHRWLSSKLYELQEVDPFPKARVGPYSPYCVAQ----------------MHRWLSSKLYELQEVDPGMKTLVF

Query:  STAARRRKSTITKILSRNGTSLLSDKDIKTEFLGFYSKLYTKDDNRCLIPTNLDWSPISASQVTDLECPFTEEEVFLAVSSLGTNKSPDPD
            RR +  I ++ + NG  + + + IK E L ++ KLYT           LDWSPIS      LE PFTEEE+F A+  +  +K+P PD
Subjt:  STAARRRKSTITKILSRNGTSLLSDKDIKTEFLGFYSKLYTKDDNRCLIPTNLDWSPISASQVTDLECPFTEEEVFLAVSSLGTNKSPDPD

A0A5A7ULE1 LINE-1 retrotransposable element ORF2 protein1.1e-0937.04Show/hide
Query:  MKTLVFSTAARRRKSTITKILSRNGTSLLSDKDIKTEFLGFYSKLYTKDDNRCLIPTNLDWSPISASQVTDLECPFTEEEVFLAVSSLGTNKSPDPDEVF
        +K  + S+++R++K  I+KI++ +G + L+D DI   F+  + ++YT + N  L   NLDW PIS +    L+ PF E E++L + S   NK+P PD  F
Subjt:  MKTLVFSTAARRRKSTITKILSRNGTSLLSDKDIKTEFLGFYSKLYTKDDNRCLIPTNLDWSPISASQVTDLECPFTEEEVFLAVSSLGTNKSPDPDEVF

Query:  PSAFLASS
           FL  S
Subjt:  PSAFLASS

A0A5D3CIV7 Uncharacterized protein6.7e-1045.12Show/hide
Query:  FLGFYSKLYTKDDNRCLIPTNLDWSPISASQVTDLECPFTEEEVFLAVSSLGTNKSPDPDEVFPSAFLASSKAKDEYKQKKE
        FL FY   +TK      +P N++W PIS +   DLECPF+EEEVFLA+ SLG NKSPD      ++ +AS    D + + K+
Subjt:  FLGFYSKLYTKDDNRCLIPTNLDWSPISASQVTDLECPFTEEEVFLAVSSLGTNKSPDPDEVFPSAFLASSKAKDEYKQKKE

A0A5D3E0F6 LINE-1 retrotransposable element ORF2 protein4.4e-0939.77Show/hide
Query:  ARRRKSTITKILSRNGTSLLSDKDIKTEFLGFYSKLYTKDDNRCLIPTNLDWSPISASQVTDLECPFTEEEVFLAVSSLGTNKSPDPD
        AR++K  I+KI++ +G + L+D DI   F+  + ++YT + N  L   NLDW PIS +    L+ PF E E++L + S   NK+P PD
Subjt:  ARRRKSTITKILSRNGTSLLSDKDIKTEFLGFYSKLYTKDDNRCLIPTNLDWSPISASQVTDLECPFTEEEVFLAVSSLGTNKSPDPD

A5BCI7 Reverse transcriptase domain-containing protein1.5e-0926.7Show/hide
Query:  WKLKEIPRKFQFPKARVGPYSPYCVAQMHRWLSSKLYELQEVDPFPKARVGPYSPYCVAQ----------------MHRWLSSKLYELQEVDPGMKTLVF
        W+  +  RK QF KA++  ++     ++ +     L +L   D   +   G  S   +AQ                +H    +++  ++E D   +    
Subjt:  WKLKEIPRKFQFPKARVGPYSPYCVAQMHRWLSSKLYELQEVDPFPKARVGPYSPYCVAQ----------------MHRWLSSKLYELQEVDPGMKTLVF

Query:  STAARRRKSTITKILSRNGTSLLSDKDIKTEFLGFYSKLYTKDDNRCLIPTNLDWSPISASQVTDLECPFTEEEVFLAVSSLGTNKSPDPD
            RR +  I ++ + NG  + + + IK E L ++ KLYT           LDWSPIS      LE PFTEEE+F A+  +  +K+P PD
Subjt:  STAARRRKSTITKILSRNGTSLLSDKDIKTEFLGFYSKLYTKDDNRCLIPTNLDWSPISASQVTDLECPFTEEEVFLAVSSLGTNKSPDPD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGAAGTTGCAAAGGATCTCAATGCAACCTGCGTGGCTGGGTTATTGGTAATCAAGAAGATAAGAGAACTTGGGGATACTCATCGGTCTTTTCCTTGCAAGACTGA
CATGACCATTCTGCAGTTTCTGTATCCAAGAGAGGAGGGTCGAGACATGCAGGATGAAAAAGTTGCTCACAACAGGAACATCGAAAAAAATAGAACTAATTCTGGATTTT
GTCCCAACGGTAACAAGATGCAATGTCAGAGGAACCAATACACTGTACCATCATCTCAGCTTCTAGTGGTGCTTCCACGATCTCAAATTCAGCTCCTCGGTAGCTCAGTG
TGCGACACAAATACATACCCCTGGAAGTTAAAAGAAATACCTAGGAAGTTCCAGTTCCCCAAAGCCCGAGTCGGACCATATAGCCCATATTGCGTGGCTCAGATGCACCG
GTGGCTGAGCAGTAAATTATACGAGCTTCAGGAAGTCGATCCTTTCCCCAAAGCCCGAGTCGGACCATATAGCCCATATTGCGTGGCTCAGATGCACCGGTGGCTGAGCA
GTAAATTATACGAGCTTCAGGAAGTCGATCCTGGGATGAAAACACTTGTTTTTTCCACAGCAGCTCGACGTCGAAAAAGTACAATTACAAAAATTCTCTCTAGAAATGGT
ACTAGTCTCCTGAGCGACAAGGACATTAAGACTGAATTCTTGGGTTTTTATTCAAAGCTTTATACTAAAGACGATAATCGGTGTCTTATTCCAACAAACCTTGATTGGAG
CCCTATATCAGCCTCTCAAGTTACTGATTTGGAGTGCCCTTTTACGGAAGAGGAGGTTTTCTTGGCGGTCTCCTCCCTTGGCACAAATAAATCTCCTGACCCTGATGAAG
TTTTTCCCTCTGCATTTTTGGCTTCTAGTAAGGCTAAAGATGAGTATAAGCAGAAAAAAGAAACAGGAGATGAAAACGGGAGAGAAGAAGATGGCAGCACAAGAACAGAC
AAAAAAGAACATCAGAAAATCCAAGTCCAAAAGCAAGTTCAGGAGGCTGGACAGCAGATAAGGAGGATGTTTCCACAACTGGGTCCGGGTGAGAGATCTCCAGAGAACAT
ATGCAAGATGACAAGCAACATGGAACACACAGTGATGACAAAGTACACTTCAACTTTGAACCTCGTATCCGGCTCCGAACAAGTTCCAAGCAAAATAATTAGAATGAGGC
GGCCGGGAGGGAAAGAACTGATGGAGCTTGGAGACATCGACAGCGAGGTCAACCGCGCACTGAGGACAAACGAACCTAGTACATGGTGTATGGACAAAGGAGGGGGAAGG
GGCATCGACGGCGGAAGCGACGGAGGTGGCGGCGGTAGCGGAGGAGGAGGAAGGGGCTTGGAGTGGGCCCTAACTAAAAGCTCAGGAGGCAACATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGAAGTTGCAAAGGATCTCAATGCAACCTGCGTGGCTGGGTTATTGGTAATCAAGAAGATAAGAGAACTTGGGGATACTCATCGGTCTTTTCCTTGCAAGACTGA
CATGACCATTCTGCAGTTTCTGTATCCAAGAGAGGAGGGTCGAGACATGCAGGATGAAAAAGTTGCTCACAACAGGAACATCGAAAAAAATAGAACTAATTCTGGATTTT
GTCCCAACGGTAACAAGATGCAATGTCAGAGGAACCAATACACTGTACCATCATCTCAGCTTCTAGTGGTGCTTCCACGATCTCAAATTCAGCTCCTCGGTAGCTCAGTG
TGCGACACAAATACATACCCCTGGAAGTTAAAAGAAATACCTAGGAAGTTCCAGTTCCCCAAAGCCCGAGTCGGACCATATAGCCCATATTGCGTGGCTCAGATGCACCG
GTGGCTGAGCAGTAAATTATACGAGCTTCAGGAAGTCGATCCTTTCCCCAAAGCCCGAGTCGGACCATATAGCCCATATTGCGTGGCTCAGATGCACCGGTGGCTGAGCA
GTAAATTATACGAGCTTCAGGAAGTCGATCCTGGGATGAAAACACTTGTTTTTTCCACAGCAGCTCGACGTCGAAAAAGTACAATTACAAAAATTCTCTCTAGAAATGGT
ACTAGTCTCCTGAGCGACAAGGACATTAAGACTGAATTCTTGGGTTTTTATTCAAAGCTTTATACTAAAGACGATAATCGGTGTCTTATTCCAACAAACCTTGATTGGAG
CCCTATATCAGCCTCTCAAGTTACTGATTTGGAGTGCCCTTTTACGGAAGAGGAGGTTTTCTTGGCGGTCTCCTCCCTTGGCACAAATAAATCTCCTGACCCTGATGAAG
TTTTTCCCTCTGCATTTTTGGCTTCTAGTAAGGCTAAAGATGAGTATAAGCAGAAAAAAGAAACAGGAGATGAAAACGGGAGAGAAGAAGATGGCAGCACAAGAACAGAC
AAAAAAGAACATCAGAAAATCCAAGTCCAAAAGCAAGTTCAGGAGGCTGGACAGCAGATAAGGAGGATGTTTCCACAACTGGGTCCGGGTGAGAGATCTCCAGAGAACAT
ATGCAAGATGACAAGCAACATGGAACACACAGTGATGACAAAGTACACTTCAACTTTGAACCTCGTATCCGGCTCCGAACAAGTTCCAAGCAAAATAATTAGAATGAGGC
GGCCGGGAGGGAAAGAACTGATGGAGCTTGGAGACATCGACAGCGAGGTCAACCGCGCACTGAGGACAAACGAACCTAGTACATGGTGTATGGACAAAGGAGGGGGAAGG
GGCATCGACGGCGGAAGCGACGGAGGTGGCGGCGGTAGCGGAGGAGGAGGAAGGGGCTTGGAGTGGGCCCTAACTAAAAGCTCAGGAGGCAACATCTGA
Protein sequenceShow/hide protein sequence
MVEVAKDLNATCVAGLLVIKKIRELGDTHRSFPCKTDMTILQFLYPREEGRDMQDEKVAHNRNIEKNRTNSGFCPNGNKMQCQRNQYTVPSSQLLVVLPRSQIQLLGSSV
CDTNTYPWKLKEIPRKFQFPKARVGPYSPYCVAQMHRWLSSKLYELQEVDPFPKARVGPYSPYCVAQMHRWLSSKLYELQEVDPGMKTLVFSTAARRRKSTITKILSRNG
TSLLSDKDIKTEFLGFYSKLYTKDDNRCLIPTNLDWSPISASQVTDLECPFTEEEVFLAVSSLGTNKSPDPDEVFPSAFLASSKAKDEYKQKKETGDENGREEDGSTRTD
KKEHQKIQVQKQVQEAGQQIRRMFPQLGPGERSPENICKMTSNMEHTVMTKYTSTLNLVSGSEQVPSKIIRMRRPGGKELMELGDIDSEVNRALRTNEPSTWCMDKGGGR
GIDGGSDGGGGGSGGGGRGLEWALTKSSGGNI