; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC02G045220 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC02G045220
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionMitochondrial 28S Ribosomal protein
Genome locationCiama_Chr02:33075894..33077903
RNA-Seq ExpressionCaUC02G045220
SyntenyCaUC02G045220
Gene Ontology termsGO:0005739 - mitochondrion (cellular component)
GO:0016020 - membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143137.1 uncharacterized protein LOC101207989 [Cucumis sativus]3.5e-3540.75Show/hide
Query:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKVCFHLVSFI
        MAVANRTAI+RALDFSR SS+F+R+FS+SSPSTSSSNPNASP SS+ KRR KKKNLFEVVQFLPNWGVGYHVAK+HWDEISYQITKINLYK         
Subjt:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKVCFHLVSFI

Query:  RCMLRFIGEQSPSIICRNFETNGIQFLPVVTISCMHSSKSNGLRVLKTLGAFDIFPMTIDNQTGSVTIYFLLGQSDSGCKFFFWLFSYRVARTARLGVLL
                                             S ++G                                                          
Subjt:  RCMLRFIGEQSPSIICRNFETNGIQFLPVVTISCMHSSKSNGLRVLKTLGAFDIFPMTIDNQTGSVTIYFLLGQSDSGCKFFFWLFSYRVARTARLGVLL

Query:  TKMVSDYISKMEYQSHRSHKYHTKSHQSNRFFEKYEISKSYKSSNLAPFRSTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS
                                                 K+  +A    TPI EAPKKISGVHKRCWKYIASLP  GESK+  SAEVQTS
Subjt:  TKMVSDYISKMEYQSHRSHKYHTKSHQSNRFFEKYEISKSYKSSNLAPFRSTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS

XP_008464074.1 PREDICTED: uncharacterized protein LOC103502049 [Cucumis melo]5.9e-3540.41Show/hide
Query:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKVCFHLVSFI
        MAVANRTAI+RALDFSR SS+FIR+F++SSPSTSSSNPNASP+SS+ KRR KKKNLFEV+QFLPNWGVGYHVAK+HWDEISYQITKINLYK         
Subjt:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKVCFHLVSFI

Query:  RCMLRFIGEQSPSIICRNFETNGIQFLPVVTISCMHSSKSNGLRVLKTLGAFDIFPMTIDNQTGSVTIYFLLGQSDSGCKFFFWLFSYRVARTARLGVLL
                                             S ++G                                                          
Subjt:  RCMLRFIGEQSPSIICRNFETNGIQFLPVVTISCMHSSKSNGLRVLKTLGAFDIFPMTIDNQTGSVTIYFLLGQSDSGCKFFFWLFSYRVARTARLGVLL

Query:  TKMVSDYISKMEYQSHRSHKYHTKSHQSNRFFEKYEISKSYKSSNLAPFRSTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS
                                                 K+  +A     PI EAPKKISGVHKRCWKYIASLP LGESK+  SAEVQTS
Subjt:  TKMVSDYISKMEYQSHRSHKYHTKSHQSNRFFEKYEISKSYKSSNLAPFRSTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS

XP_022148301.1 uncharacterized protein LOC111016988 [Momordica charantia]1.6e-3289.01Show/hide
Query:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYK
        M+VANR AITRALDFS+ SSTFIR+FSTSSPSTSSSNPNAS ASS  KRR KKKNLFEVVQFLP WGVGYHVAKAHWDEISYQITKINLYK
Subjt:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYK

XP_023007567.1 uncharacterized protein LOC111500023 [Cucurbita maxima]3.0e-3184.62Show/hide
Query:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYK
        MAVANRT I+RALDFSR +S+FIR+FSTS+ STSSS+P+AS A+SKNKRR KKKNLFEV+QFLPNWGVGYHVAKAHWDEISYQITKINLYK
Subjt:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYK

XP_023007567.1 uncharacterized protein LOC111500023 [Cucurbita maxima]4.4e-0658.33Show/hide
Query:  KSSNLAPFRSTPIAEAPKKISGVHKRCWKYIASLPSLGES---------KSNPSAEVQTS
        K+  +A     PIAEAPKKISGVHKRCWKYI SL    E+         +SNPSAEVQTS
Subjt:  KSSNLAPFRSTPIAEAPKKISGVHKRCWKYIASLPSLGES---------KSNPSAEVQTS

XP_038900676.1 uncharacterized protein LOC120087826 [Benincasa hispida]6.3e-3743.45Show/hide
Query:  VANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKVCFHLVSFIRC
        VANRTAI+RALDFSR SSTFIR+FSTSSPSTSSSNPNAS AS+KNKRR KKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYK           
Subjt:  VANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKVCFHLVSFIRC

Query:  MLRFIGEQSPSIICRNFETNGIQFLPVVTISCMHSSKSNGLRVLKTLGAFDIFPMTIDNQTGSVTIYFLLGQSDSGCKFFFWLFSYRVARTARLGVLLTK
                                              NG     T G                                                    
Subjt:  MLRFIGEQSPSIICRNFETNGIQFLPVVTISCMHSSKSNGLRVLKTLGAFDIFPMTIDNQTGSVTIYFLLGQSDSGCKFFFWLFSYRVARTARLGVLLTK

Query:  MVSDYISKMEYQSHRSHKYHTKSHQSNRFFEKYEISKSYKSSNLAPFRSTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS
                                               K+  +A    TPIAEAPKKISGVHKRCWKYIASLP  GE  SNPSAEVQTS
Subjt:  MVSDYISKMEYQSHRSHKYHTKSHQSNRFFEKYEISKSYKSSNLAPFRSTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS

TrEMBL top hitse value%identityAlignment
A0A0A0KH76 Uncharacterized protein1.7e-3540.75Show/hide
Query:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKVCFHLVSFI
        MAVANRTAI+RALDFSR SS+F+R+FS+SSPSTSSSNPNASP SS+ KRR KKKNLFEVVQFLPNWGVGYHVAK+HWDEISYQITKINLYK         
Subjt:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKVCFHLVSFI

Query:  RCMLRFIGEQSPSIICRNFETNGIQFLPVVTISCMHSSKSNGLRVLKTLGAFDIFPMTIDNQTGSVTIYFLLGQSDSGCKFFFWLFSYRVARTARLGVLL
                                             S ++G                                                          
Subjt:  RCMLRFIGEQSPSIICRNFETNGIQFLPVVTISCMHSSKSNGLRVLKTLGAFDIFPMTIDNQTGSVTIYFLLGQSDSGCKFFFWLFSYRVARTARLGVLL

Query:  TKMVSDYISKMEYQSHRSHKYHTKSHQSNRFFEKYEISKSYKSSNLAPFRSTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS
                                                 K+  +A    TPI EAPKKISGVHKRCWKYIASLP  GESK+  SAEVQTS
Subjt:  TKMVSDYISKMEYQSHRSHKYHTKSHQSNRFFEKYEISKSYKSSNLAPFRSTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS

A0A1S3CKN2 uncharacterized protein LOC1035020492.9e-3540.41Show/hide
Query:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKVCFHLVSFI
        MAVANRTAI+RALDFSR SS+FIR+F++SSPSTSSSNPNASP+SS+ KRR KKKNLFEV+QFLPNWGVGYHVAK+HWDEISYQITKINLYK         
Subjt:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKVCFHLVSFI

Query:  RCMLRFIGEQSPSIICRNFETNGIQFLPVVTISCMHSSKSNGLRVLKTLGAFDIFPMTIDNQTGSVTIYFLLGQSDSGCKFFFWLFSYRVARTARLGVLL
                                             S ++G                                                          
Subjt:  RCMLRFIGEQSPSIICRNFETNGIQFLPVVTISCMHSSKSNGLRVLKTLGAFDIFPMTIDNQTGSVTIYFLLGQSDSGCKFFFWLFSYRVARTARLGVLL

Query:  TKMVSDYISKMEYQSHRSHKYHTKSHQSNRFFEKYEISKSYKSSNLAPFRSTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS
                                                 K+  +A     PI EAPKKISGVHKRCWKYIASLP LGESK+  SAEVQTS
Subjt:  TKMVSDYISKMEYQSHRSHKYHTKSHQSNRFFEKYEISKSYKSSNLAPFRSTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS

A0A5A7V0Y6 Uncharacterized protein2.9e-3540.41Show/hide
Query:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKVCFHLVSFI
        MAVANRTAI+RALDFSR SS+FIR+F++SSPSTSSSNPNASP+SS+ KRR KKKNLFEV+QFLPNWGVGYHVAK+HWDEISYQITKINLYK         
Subjt:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKVCFHLVSFI

Query:  RCMLRFIGEQSPSIICRNFETNGIQFLPVVTISCMHSSKSNGLRVLKTLGAFDIFPMTIDNQTGSVTIYFLLGQSDSGCKFFFWLFSYRVARTARLGVLL
                                             S ++G                                                          
Subjt:  RCMLRFIGEQSPSIICRNFETNGIQFLPVVTISCMHSSKSNGLRVLKTLGAFDIFPMTIDNQTGSVTIYFLLGQSDSGCKFFFWLFSYRVARTARLGVLL

Query:  TKMVSDYISKMEYQSHRSHKYHTKSHQSNRFFEKYEISKSYKSSNLAPFRSTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS
                                                 K+  +A     PI EAPKKISGVHKRCWKYIASLP LGESK+  SAEVQTS
Subjt:  TKMVSDYISKMEYQSHRSHKYHTKSHQSNRFFEKYEISKSYKSSNLAPFRSTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS

A0A6J1D4Z3 uncharacterized protein LOC1110169887.8e-3389.01Show/hide
Query:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYK
        M+VANR AITRALDFS+ SSTFIR+FSTSSPSTSSSNPNAS ASS  KRR KKKNLFEVVQFLP WGVGYHVAKAHWDEISYQITKINLYK
Subjt:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYK

A0A6J1KZ28 uncharacterized protein LOC1115000231.5e-3184.62Show/hide
Query:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYK
        MAVANRT I+RALDFSR +S+FIR+FSTS+ STSSS+P+AS A+SKNKRR KKKNLFEV+QFLPNWGVGYHVAKAHWDEISYQITKINLYK
Subjt:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYK

A0A6J1KZ28 uncharacterized protein LOC1115000232.1e-0658.33Show/hide
Query:  KSSNLAPFRSTPIAEAPKKISGVHKRCWKYIASLPSLGES---------KSNPSAEVQTS
        K+  +A     PIAEAPKKISGVHKRCWKYI SL    E+         +SNPSAEVQTS
Subjt:  KSSNLAPFRSTPIAEAPKKISGVHKRCWKYIASLPSLGES---------KSNPSAEVQTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G52370.1 unknown protein1.4e-1855.91Show/hide
Query:  MPMAVANRT-AITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRRKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYK
        M M + NR  + T  +   R S   +R+FS    + +S NP++   SSK KRRKKKNL EV QFLPNWG+GYH+AKAHW+ ISY+ITKINLYK
Subjt:  MPMAVANRT-AITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRRKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYK

AT5G52370.1 unknown protein6.8e-0560.53Show/hide
Query:  AEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS
        AEAPKKISGVHKRCWKYI +L     + +  SA VQ +
Subjt:  AEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS

AT5G58990.1 unknown protein8.3e-1956.25Show/hide
Query:  MPMAVANRTAITRALDFSRF--SSTFIRSFSTSSPSTSSSNPNASPASSKN--KRRKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYK
        M M + NR AI+R      F  S + +R+FS ++PS +S+  + +P+S  N  KRRKKKNL EV QFLPNWG+GYH+AKAHW+ ISY+ITKINLYK
Subjt:  MPMAVANRTAITRALDFSRF--SSTFIRSFSTSSPSTSSSNPNASPASSKN--KRRKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYK

AT5G58990.1 unknown protein4.0e-0560.98Show/hide
Query:  AEAPKKISGVHKRCWKYIASLPSLGESKSNP---SAEVQTS
        AEAPKKISGVHKRCWKYI +L     SK+ P   +A+VQ +
Subjt:  AEAPKKISGVHKRCWKYIASLPSLGESKSNP---SAEVQTS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAATGGCTGTCGCCAACAGAACTGCCATCACTCGAGCCCTAGATTTCTCCAGGTTTTCTTCTACTTTTATCAGAAGCTTCAGCACCTCTTCGCCGTCGACCTCCTC
TTCAAACCCCAATGCCTCGCCTGCTTCGAGTAAAAACAAACGGAGGAAGAAGAAGAACCTGTTCGAAGTAGTTCAGTTTTTGCCCAATTGGGGAGTAGGATACCATGTCG
CCAAAGCTCACTGGGATGAAATATCGTACCAGATCACCAAAATCAATCTGTACAAGGTTTGTTTTCATTTGGTTTCTTTTATTAGATGTATGTTGCGGTTCATTGGAGAA
CAATCTCCCTCTATAATCTGCCGAAATTTTGAAACAAATGGTATTCAGTTTCTTCCAGTCGTTACCATTTCTTGTATGCATTCAAGTAAATCGAACGGGTTGAGGGTTTT
AAAGACTTTGGGGGCGTTTGACATCTTTCCTATGACAATTGATAATCAAACAGGAAGTGTAACAATCTATTTTCTTTTGGGTCAATCTGATTCAGGGTGTAAGTTTTTCT
TTTGGCTTTTTTCTTACAGAGTGGCACGCACGGCAAGGCTTGGGGTGTTGCTCACAAAAATGGTTAGTGATTATATATCAAAAATGGAATATCAATCTCATCGATCTCAT
AAGTATCATACCAAATCCCATCAATCGAATCGCTTTTTCGAGAAATACGAGATATCTAAGTCATACAAGTCAAGTAACTTAGCCCCCTTTAGAAGCACACCCATTGCCGA
AGCTCCAAAGAAAATTAGCGGAGTTCACAAGCGCTGTTGGAAGTATATCGCTAGCTTGCCGAGTTTGGGAGAAAGCAAAAGCAACCCATCAGCTGAAGTTCAAACTTCAT
GA
mRNA sequenceShow/hide mRNA sequence
ATGCCAATGGCTGTCGCCAACAGAACTGCCATCACTCGAGCCCTAGATTTCTCCAGGTTTTCTTCTACTTTTATCAGAAGCTTCAGCACCTCTTCGCCGTCGACCTCCTC
TTCAAACCCCAATGCCTCGCCTGCTTCGAGTAAAAACAAACGGAGGAAGAAGAAGAACCTGTTCGAAGTAGTTCAGTTTTTGCCCAATTGGGGAGTAGGATACCATGTCG
CCAAAGCTCACTGGGATGAAATATCGTACCAGATCACCAAAATCAATCTGTACAAGGTTTGTTTTCATTTGGTTTCTTTTATTAGATGTATGTTGCGGTTCATTGGAGAA
CAATCTCCCTCTATAATCTGCCGAAATTTTGAAACAAATGGTATTCAGTTTCTTCCAGTCGTTACCATTTCTTGTATGCATTCAAGTAAATCGAACGGGTTGAGGGTTTT
AAAGACTTTGGGGGCGTTTGACATCTTTCCTATGACAATTGATAATCAAACAGGAAGTGTAACAATCTATTTTCTTTTGGGTCAATCTGATTCAGGGTGTAAGTTTTTCT
TTTGGCTTTTTTCTTACAGAGTGGCACGCACGGCAAGGCTTGGGGTGTTGCTCACAAAAATGGTTAGTGATTATATATCAAAAATGGAATATCAATCTCATCGATCTCAT
AAGTATCATACCAAATCCCATCAATCGAATCGCTTTTTCGAGAAATACGAGATATCTAAGTCATACAAGTCAAGTAACTTAGCCCCCTTTAGAAGCACACCCATTGCCGA
AGCTCCAAAGAAAATTAGCGGAGTTCACAAGCGCTGTTGGAAGTATATCGCTAGCTTGCCGAGTTTGGGAGAAAGCAAAAGCAACCCATCAGCTGAAGTTCAAACTTCAT
GA
Protein sequenceShow/hide protein sequence
MPMAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRRKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKVCFHLVSFIRCMLRFIGE
QSPSIICRNFETNGIQFLPVVTISCMHSSKSNGLRVLKTLGAFDIFPMTIDNQTGSVTIYFLLGQSDSGCKFFFWLFSYRVARTARLGVLLTKMVSDYISKMEYQSHRSH
KYHTKSHQSNRFFEKYEISKSYKSSNLAPFRSTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS