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CaUC02G045270 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC02G045270
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionTropomyosin
Genome locationCiama_Chr02:33124490..33124807
RNA-Seq ExpressionCaUC02G045270
SyntenyCaUC02G045270
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061866.1 tropomyosin [Cucumis melo var. makuwa]4.3e-2882.35Show/hide
Query:  SSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRRGAKGGKHSSSSDSSGNGNTGDASAGSSAAATAAAAVAVTAVTTDAFDDDGGSTHAHGGEGGGGG
        SSKICFCIPRHKNGHKADGG EKSSKSK SR KSRRG+K GKHSS SDSSGNGN+GDA A   A+ATA AAVAVTAVT DA DDDGGSTH HGGEGG GG
Subjt:  SSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRRGAKGGKHSSSSDSSGNGNTGDASAGSSAAATAAAAVAVTAVTTDAFDDDGGSTHAHGGEGGGGG

Query:  GG
         G
Subjt:  GG

KAG6605437.1 hypothetical protein SDJN03_02754, partial [Cucurbita argyrosperma subsp. sororia]2.8e-2777.57Show/hide
Query:  MESSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRRGAKGGKHSSSSDSSGNGNTGDASAGSSAAATAAAAV--AVTAVTTDAFDDDGGSTHAHGGEG
        MESSKICFCIPRHKNG KADGG EKSSKSK SR KSRR AKGGKHS SSDSSG+GNTGDA+  S++AA AA AV  A T V  DA +DDGGS+H HGGEG
Subjt:  MESSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRRGAKGGKHSSSSDSSGNGNTGDASAGSSAAATAAAAV--AVTAVTTDAFDDDGGSTHAHGGEG

Query:  GGGGGGD
        GGGGGGD
Subjt:  GGGGGGD

KAG7010529.1 hypothetical protein SDJN02_27323, partial [Cucurbita argyrosperma subsp. argyrosperma]2.1e-2783.02Show/hide
Query:  MESSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRRGAKGGKHSSSSDSSGNGNTGDASAGSSAAATAAAAVAVTAVTTDAFD-DDGGSTHAHGGEGG
        MESSKICFCIPRHKN HK DGG EKSSKSK SR KS  GAK GKHSSSSDSSGNGNTGDASA  SAA  A AA+AVTAVT DA D DDGGSTH HGGEGG
Subjt:  MESSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRRGAKGGKHSSSSDSSGNGNTGDASAGSSAAATAAAAVAVTAVTTDAFD-DDGGSTHAHGGEGG

Query:  GGGGGD
        GGGGGD
Subjt:  GGGGGD

KAG7035385.1 hypothetical protein SDJN02_02181 [Cucurbita argyrosperma subsp. argyrosperma]2.8e-2777.57Show/hide
Query:  MESSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRRGAKGGKHSSSSDSSGNGNTGDASAGSSAAATAAAAV--AVTAVTTDAFDDDGGSTHAHGGEG
        MESSKICFCIPRHKNG KADGG EKSSKSK SR KSRR AKGGKHS SSDSSG+GNTGDA+  S++AA AA AV  A T V  DA +DDGGS+H HGGEG
Subjt:  MESSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRRGAKGGKHSSSSDSSGNGNTGDASAGSSAAATAAAAV--AVTAVTTDAFDDDGGSTHAHGGEG

Query:  GGGGGGD
        GGGGGGD
Subjt:  GGGGGGD

TYK15390.1 tropomyosin [Cucumis melo var. makuwa]4.3e-2882.35Show/hide
Query:  SSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRRGAKGGKHSSSSDSSGNGNTGDASAGSSAAATAAAAVAVTAVTTDAFDDDGGSTHAHGGEGGGGG
        SSKICFCIPRHKNGHKADGG EKSSKSK SR KSRRG+K GKHSS SDSSGNGN+GDA A   A+ATA AAVAVTAVT DA DDDGGSTH HGGEGG GG
Subjt:  SSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRRGAKGGKHSSSSDSSGNGNTGDASAGSSAAATAAAAVAVTAVTTDAFDDDGGSTHAHGGEGGGGG

Query:  GG
         G
Subjt:  GG

TrEMBL top hitse value%identityAlignment
A0A0A0KFD0 Uncharacterized protein8.7e-2779.61Show/hide
Query:  SSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRRGAKGGKHSSSSDSSGNGNTGDASAGSSAAATAAAAVAVTAVTTDAFDDDGGSTHAHGGEGGGGG
        SSKICFCIPRHKNGHKADGG EKSSKSK SR KS R +K GKHSSSSDSSGNGN G+  A   A+ATA AAVAVTAVT DA DDDGGSTH HGGEGG G 
Subjt:  SSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRRGAKGGKHSSSSDSSGNGNTGDASAGSSAAATAAAAVAVTAVTTDAFDDDGGSTHAHGGEGGGGG

Query:  GGD
        GGD
Subjt:  GGD

A0A5A7V5U9 Tropomyosin2.1e-2882.35Show/hide
Query:  SSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRRGAKGGKHSSSSDSSGNGNTGDASAGSSAAATAAAAVAVTAVTTDAFDDDGGSTHAHGGEGGGGG
        SSKICFCIPRHKNGHKADGG EKSSKSK SR KSRRG+K GKHSS SDSSGNGN+GDA A   A+ATA AAVAVTAVT DA DDDGGSTH HGGEGG GG
Subjt:  SSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRRGAKGGKHSSSSDSSGNGNTGDASAGSSAAATAAAAVAVTAVTTDAFDDDGGSTHAHGGEGGGGG

Query:  GG
         G
Subjt:  GG

A0A5D3CVK1 Tropomyosin2.1e-2882.35Show/hide
Query:  SSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRRGAKGGKHSSSSDSSGNGNTGDASAGSSAAATAAAAVAVTAVTTDAFDDDGGSTHAHGGEGGGGG
        SSKICFCIPRHKNGHKADGG EKSSKSK SR KSRRG+K GKHSS SDSSGNGN+GDA A   A+ATA AAVAVTAVT DA DDDGGSTH HGGEGG GG
Subjt:  SSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRRGAKGGKHSSSSDSSGNGNTGDASAGSSAAATAAAAVAVTAVTTDAFDDDGGSTHAHGGEGGGGG

Query:  GG
         G
Subjt:  GG

A0A6J1D515 circumsporozoite protein-like3.4e-2371.3Show/hide
Query:  MESSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRRGAKGGKHSSSSDSSGNGNTGDASA---GSSAAATAAAAVAVTAVTTDAFDDDGGSTHAHGGE
        MES+KICFCIPRHKNGHKA+GG EKSSKSK SR KSRRG KGGKHSSSSDSSG+GNT   +A   GS AA  A   +  TA T DA +DDGGS H HGG 
Subjt:  MESSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRRGAKGGKHSSSSDSSGNGNTGDASA---GSSAAATAAAAVAVTAVTTDAFDDDGGSTHAHGGE

Query:  GGGGGGGD
        GG GGGGD
Subjt:  GGGGGGGD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTCCTCAAAGATTTGTTTCTGTATTCCTCGCCATAAAAATGGCCACAAAGCTGATGGAGGATTGGAGAAATCTTCCAAATCAAAGTCTTCTCGCTGCAAATCTCG
CCGAGGCGCAAAAGGAGGTAAGCATTCCTCTAGTAGTGATAGTAGTGGAAATGGAAACACAGGTGATGCAAGTGCAGGCAGCAGCGCTGCCGCCACTGCTGCGGCTGCTG
TTGCTGTCACGGCAGTGACCACGGATGCCTTTGATGATGACGGTGGCAGCACCCATGCCCACGGTGGTGAGGGAGGCGGTGGTGGTGGTGGAGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGTCCTCAAAGATTTGTTTCTGTATTCCTCGCCATAAAAATGGCCACAAAGCTGATGGAGGATTGGAGAAATCTTCCAAATCAAAGTCTTCTCGCTGCAAATCTCG
CCGAGGCGCAAAAGGAGGTAAGCATTCCTCTAGTAGTGATAGTAGTGGAAATGGAAACACAGGTGATGCAAGTGCAGGCAGCAGCGCTGCCGCCACTGCTGCGGCTGCTG
TTGCTGTCACGGCAGTGACCACGGATGCCTTTGATGATGACGGTGGCAGCACCCATGCCCACGGTGGTGAGGGAGGCGGTGGTGGTGGTGGAGATTAG
Protein sequenceShow/hide protein sequence
MESSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRRGAKGGKHSSSSDSSGNGNTGDASAGSSAAATAAAAVAVTAVTTDAFDDDGGSTHAHGGEGGGGGGGD