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CaUC02G045700 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC02G045700
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionDNA polymerase epsilon subunit 3
Genome locationCiama_Chr02:33474140..33476690
RNA-Seq ExpressionCaUC02G045700
SyntenyCaUC02G045700
Gene Ontology termsGO:0009987 - cellular process (biological process)
GO:0005694 - chromosome (cellular component)
GO:0016020 - membrane (cellular component)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AFK43746.1 unknown [Lotus japonicus]1.2e-1748.57Show/hide
Query:  RVAALNHNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSICNSITNHILEEDLQNTSGFFIDQSTNTLHTTSTSQTANGRLSNTLNVVSQDLPILVGFRV
        R+      LT ++I+ PSL  + I+HIHGS+ LPPS+LS+ NSITNHIL++DL+NT+   IDQ+T+TLH T  SQT N  L ++L+VV++DL +  G  +
Subjt:  RVAALNHNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSICNSITNHILEEDLQNTSGFFIDQSTNTLHTTSTSQTANGRLSNTLNVVSQDLPILVGFRV

Query:  REQST
         +  T
Subjt:  REQST

KAF1894647.1 hypothetical protein Lal_00027024 [Lupinus albus]3.4e-1756.47Show/hide
Query:  NLTSETIQSPSLPFQGINHIHGSHRLPPSVLSICNSITNHILEEDLQNTSGFFIDQSTNTLHTTSTSQTANGRLSNTLNVVSQDL
        NLT++TI+ PSL  + IN+IH S+RLPPS+ SI N ITNHIL+ED +NTS  FI+Q+T++ HT+S+ Q+ N R  ++LNVV+Q+L
Subjt:  NLTSETIQSPSLPFQGINHIHGSHRLPPSVLSICNSITNHILEEDLQNTSGFFIDQSTNTLHTTSTSQTANGRLSNTLNVVSQDL

KAF3586617.1 hypothetical protein F2Q69_00026051 [Brassica cretica]3.3e-2040.97Show/hide
Query:  GFNLRVGAQPKKK----KKEWNKRVAALNHNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSICNSITNHILEEDLQNTSGFFIDQSTNTLHTTSTSQTA
        G  L +  +PKKK      + ++ +  ++ +LT+ET++S SLP Q INHIH S+ LPP VLS+C+S+T+ ILE+DL+++SG  +DQ+ NTL  TS S+T 
Subjt:  GFNLRVGAQPKKK----KKEWNKRVAALNHNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSICNSITNHILEEDLQNTSGFFIDQSTNTLHTTSTSQTA

Query:  NGRLSNTLNVVSQDLPILVGFRVREQSTLSVGFYIHRRFTRAIR
        NGRL +TL+V+ + LP+ +G  + +  +     Y   R+   +R
Subjt:  NGRLSNTLNVVSQDLPILVGFRVREQSTLSVGFYIHRRFTRAIR

KAG6540107.1 hypothetical protein Mapa_018562 [Marchantia paleacea]2.6e-1748.96Show/hide
Query:  VAALNHNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSICNSITNHILEEDLQNTSGFFIDQSTNTLHTTSTSQTANGRLSNTLNVVSQDLPILVG
        +AA  H L+SE++QS SL  QG++HIH S  L P VL + + I++H+L++DLQN++  FI+Q  +TLH++S+SQT +G L N LNV+S+ LP+ +G
Subjt:  VAALNHNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSICNSITNHILEEDLQNTSGFFIDQSTNTLHTTSTSQTANGRLSNTLNVVSQDLPILVG

VDD41806.1 unnamed protein product [Brassica oleracea]8.4e-1643.75Show/hide
Query:  QPKKKKKEWNKRVAALNHNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSICNSITNHILEEDLQNTSGFFIDQSTNTLHTTSTSQTANGRLSNTLNV-V
        Q K+K  + ++ +  ++ +LT+ET++S SLP Q INHIHG   LPP VL + + I + ILEEDL+++SG  +DQ+ NTL TTSTS+T NGRL+  + V V
Subjt:  QPKKKKKEWNKRVAALNHNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSICNSITNHILEEDLQNTSGFFIDQSTNTLHTTSTSQTANGRLSNTLNV-V

Query:  SQDLPILVGFRVREQSTLSVGFYIHRRF
             +L+    R   T+ +  +I RRF
Subjt:  SQDLPILVGFRVREQSTLSVGFYIHRRF

TrEMBL top hitse value%identityAlignment
A0A1J3E1Q1 Uncharacterized protein (Fragment)3.1e-1650Show/hide
Query:  NKRVAALNHNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSICNSITNHILEEDLQNTSGFFIDQSTNTLHTTSTSQTANGRLSNTLNVVSQDLPI
        N+R+   +   T+E+I+S +L  Q I++IH SHRLPP VLS+ +S+++ ILE+DLQN+S FF+DQ+ ++LH +STS++ N RL ++L+VVSQ+LP+
Subjt:  NKRVAALNHNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSICNSITNHILEEDLQNTSGFFIDQSTNTLHTTSTSQTANGRLSNTLNVVSQDLPI

A0A6A5PAG4 Uncharacterized protein1.7e-1756.47Show/hide
Query:  NLTSETIQSPSLPFQGINHIHGSHRLPPSVLSICNSITNHILEEDLQNTSGFFIDQSTNTLHTTSTSQTANGRLSNTLNVVSQDL
        NLT++TI+ PSL  + IN+IH S+RLPPS+ SI N ITNHIL+ED +NTS  FI+Q+T++ HT+S+ Q+ N R  ++LNVV+Q+L
Subjt:  NLTSETIQSPSLPFQGINHIHGSHRLPPSVLSICNSITNHILEEDLQNTSGFFIDQSTNTLHTTSTSQTANGRLSNTLNVVSQDL

A0A7G3AFY5 Putative conserved secreted protein (Fragment)4.1e-1648.91Show/hide
Query:  NHNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSICNSITNHILEEDLQNTSGFFIDQSTNTLHTTSTSQTANGRLSNTLNVVSQDLPILVG
        +H L +E ++S +L F+GI+ +H SH L   VL + +S+TNH+L+E L+NTSGFFID+  NTLHTT+T QT N  L +TL++V++ L + +G
Subjt:  NHNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSICNSITNHILEEDLQNTSGFFIDQSTNTLHTTSTSQTANGRLSNTLNVVSQDLPILVG

I3SU04 Uncharacterized protein5.7e-1848.57Show/hide
Query:  RVAALNHNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSICNSITNHILEEDLQNTSGFFIDQSTNTLHTTSTSQTANGRLSNTLNVVSQDLPILVGFRV
        R+      LT ++I+ PSL  + I+HIHGS+ LPPS+LS+ NSITNHIL++DL+NT+   IDQ+T+TLH T  SQT N  L ++L+VV++DL +  G  +
Subjt:  RVAALNHNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSICNSITNHILEEDLQNTSGFFIDQSTNTLHTTSTSQTANGRLSNTLNVVSQDLPILVGFRV

Query:  REQST
         +  T
Subjt:  REQST

V9IKG5 Uncharacterized protein1.7e-1753.33Show/hide
Query:  AALNHNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSICNSITNHILEEDLQNTSGFFIDQSTNTLHTTSTSQTANGRLSNTLNVVSQDL
        AA+ H LT++T++  SL  Q +N+IHGS+ LP  +LS+ +SI+++I +E LQ TS FF+DQS NTLHTT+TS+T NG   NTL+V++Q+L
Subjt:  AALNHNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSICNSITNHILEEDLQNTSGFFIDQSTNTLHTTSTSQTANGRLSNTLNVVSQDL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATAGAAGCAAACACGTGCTCAAGAGATCAAAAGAAAACATCGTTCGTGGTCCAAAAGACAAATTTGTTCATGAAGGACGCAAGCATCGCTACGGATTCAATTTACG
AGTGGGCGCGCAACCAAAGAAGAAGAAGAAAGAGTGGAACAAACGAGTAGCAGCACTAAACCATAACCTAACCTCCGAAACCATACAAAGTCCTTCCCTGCCTTTTCAAG
GCATAAACCACATCCATGGCAGTCACCGTCTTCCTCCTAGCGTGCTCAGTATATGTAACAGCATCACGAATCACATTCTCGAGGAAGATCTTCAAAACACCTCTGGTTTC
TTCATAGATCAATCCACTAATACGCTTCACACCACCTCTACGAGCCAAACGGCGAATGGCAGGCTTAGTAATACCCTGAATGTTGTCTCTCAGGACCTTCCTATTCTAGT
CGGCTTCCGAGTTCGGGAACAAAGCACCTTGTCCGTTGGATTTTATATCCATCGACGGTTCACAAGGGCGATCCGCGTGAAACCTTTTCGGATCGAGGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCATAGAAGCAAACACGTGCTCAAGAGATCAAAAGAAAACATCGTTCGTGGTCCAAAAGACAAATTTGTTCATGAAGGACGCAAGCATCGCTACGGATTCAATTTACG
AGTGGGCGCGCAACCAAAGAAGAAGAAGAAAGAGTGGAACAAACGAGTAGCAGCACTAAACCATAACCTAACCTCCGAAACCATACAAAGTCCTTCCCTGCCTTTTCAAG
GCATAAACCACATCCATGGCAGTCACCGTCTTCCTCCTAGCGTGCTCAGTATATGTAACAGCATCACGAATCACATTCTCGAGGAAGATCTTCAAAACACCTCTGGTTTC
TTCATAGATCAATCCACTAATACGCTTCACACCACCTCTACGAGCCAAACGGCGAATGGCAGGCTTAGTAATACCCTGAATGTTGTCTCTCAGGACCTTCCTATTCTAGT
CGGCTTCCGAGTTCGGGAACAAAGCACCTTGTCCGTTGGATTTTATATCCATCGACGGTTCACAAGGGCGATCCGCGTGAAACCTTTTCGGATCGAGGTTTGA
Protein sequenceShow/hide protein sequence
MHRSKHVLKRSKENIVRGPKDKFVHEGRKHRYGFNLRVGAQPKKKKKEWNKRVAALNHNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSICNSITNHILEEDLQNTSGF
FIDQSTNTLHTTSTSQTANGRLSNTLNVVSQDLPILVGFRVREQSTLSVGFYIHRRFTRAIRVKPFRIEV