CuGenDBv2

Gene ID	CaUC02G046810
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	50S ribosomal protein L18
Genome location	Ciama_Chr02:34618084..34618470
RNA-Seq Expression	CaUC02G046810
Synteny	CaUC02G046810
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0008097 - 5S rRNA binding (molecular function)
InterPro domains	IPR005484 - Ribosomal protein L18

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

TYK06187.1 50S ribosomal protein L18 [Cucumis melo var. makuwa]

3.1e-57

92.25

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Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW
        MTVLKRYVLRLFISLKYITANVVDRNNGR+VATASTVEHSIK SLECGRSCNAKAAA+VGEVLAMRLKVDGLEQGQGRGIH DINKE+EKKGF+NRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW

Query:  AMVNSLKNNGVKLILDNNV-DDASQSSYQ
        A+VNSLKNNGVKLILDNNV DDA+QS+YQ
Subjt:  AMVNSLKNNGVKLILDNNV-DDASQSSYQ

XP_022943852.1 uncharacterized protein LOC111448460 [Cucurbita moschata]

3.7e-58

93.75

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Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW
        MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIH+DINKE+EKKGFKNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW

Query:  AMVNSLKNNGVKLILDNNVDDASQSSYQ
        A+VNSLKNNGVKLILDNN DDAS+ SY+
Subjt:  AMVNSLKNNGVKLILDNNVDDASQSSYQ

XP_022985582.1 uncharacterized protein LOC111483610 [Cucurbita maxima]

1.8e-57

92.97

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Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW
        MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIH+DINKE+EKKGFKNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW

Query:  AMVNSLKNNGVKLILDNNVDDASQSSYQ
        A+VNSLKNNGVKLILDNN DDA + SY+
Subjt:  AMVNSLKNNGVKLILDNNVDDASQSSYQ

XP_023511782.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo]

4.8e-58

92.97

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Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW
        MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIH+D+NKE+EKKGFKNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW

Query:  AMVNSLKNNGVKLILDNNVDDASQSSYQ
        A+VNSLKNNGVKLILDNN DDAS+ SY+
Subjt:  AMVNSLKNNGVKLILDNNVDDASQSSYQ

XP_038901007.1 uncharacterized protein LOC120088052 [Benincasa hispida]

1.2e-59

95.31

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Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW
        MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIH D+NKE+EKKGFKNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW

Query:  AMVNSLKNNGVKLILDNNVDDASQSSYQ
        A+VN+LKNNGVKLILDNNVDDAS+SSYQ
Subjt:  AMVNSLKNNGVKLILDNNVDDASQSSYQ

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E442 uncharacterized protein LOC103501501

5.8e-57

91.47

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Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW
        MTVLKRYVLRLFISLKYITANVVDRNNGR+VATASTVEHSIK SLECGRSCNAKAAA+VGEVLAMRLKVDGLEQGQGRGIH DINKE+EKKGF+NRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW

Query:  AMVNSLKNNGVKLILDNNV-DDASQSSYQ
        A+VNSLKNNGVKLIL+NNV DDA+QS+YQ
Subjt:  AMVNSLKNNGVKLILDNNV-DDASQSSYQ

A0A5A7SM55 50S ribosomal protein L18

5.8e-57

91.47

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Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW
        MTVLKRYVLRLFISLKYITANVVDRNNGR+VATASTVEHSIK SLECGRSCNAKAAA+VGEVLAMRLKVDGLEQGQGRGIH DINKE+EKKGF+NRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW

Query:  AMVNSLKNNGVKLILDNNV-DDASQSSYQ
        A+VNSLKNNGVKLIL+NNV DDA+QS+YQ
Subjt:  AMVNSLKNNGVKLILDNNV-DDASQSSYQ

A0A5D3C2Z2 50S ribosomal protein L18

1.5e-57

92.25

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Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW
        MTVLKRYVLRLFISLKYITANVVDRNNGR+VATASTVEHSIK SLECGRSCNAKAAA+VGEVLAMRLKVDGLEQGQGRGIH DINKE+EKKGF+NRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW

Query:  AMVNSLKNNGVKLILDNNV-DDASQSSYQ
        A+VNSLKNNGVKLILDNNV DDA+QS+YQ
Subjt:  AMVNSLKNNGVKLILDNNV-DDASQSSYQ

A0A6J1FXG0 uncharacterized protein LOC111448460

1.8e-58

93.75

Show/hide

Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW
        MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIH+DINKE+EKKGFKNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW

Query:  AMVNSLKNNGVKLILDNNVDDASQSSYQ
        A+VNSLKNNGVKLILDNN DDAS+ SY+
Subjt:  AMVNSLKNNGVKLILDNNVDDASQSSYQ

A0A6J1JBQ5 uncharacterized protein LOC111483610

8.9e-58

92.97

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Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW
        MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIH+DINKE+EKKGFKNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW

Query:  AMVNSLKNNGVKLILDNNVDDASQSSYQ
        A+VNSLKNNGVKLILDNN DDA + SY+
Subjt:  AMVNSLKNNGVKLILDNNVDDASQSSYQ

SwissProt top hits

e value

%identity

Alignment

A1KRI9 50S ribosomal protein L18

1.4e-04

29.63

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Query:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAMV
        LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +A + K  G+E+              ++ GF+   ++ A+ 
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAMV

Query:  NSLKNNGV
         + + NG+
Subjt:  NSLKNNGV

A9M3V0 50S ribosomal protein L18

1.4e-04

29.63

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Query:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAMV
        LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +A + K  G+E+              ++ GF+   ++ A+ 
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAMV

Query:  NSLKNNGV
         + + NG+
Subjt:  NSLKNNGV

Q5F5U3 50S ribosomal protein L18

1.4e-04

29.63

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Query:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAMV
        LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +A + K  G+E+              ++ GF+   ++ A+ 
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAMV

Query:  NSLKNNGV
         + + NG+
Subjt:  NSLKNNGV

Q7DDT0 50S ribosomal protein L18

1.4e-04

29.63

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Query:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAMV
        LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +A + K  G+E+              ++ GF+   ++ A+ 
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAMV

Query:  NSLKNNGV
         + + NG+
Subjt:  NSLKNNGV

Q9JQQ6 50S ribosomal protein L18

1.4e-04

29.63

Show/hide

Query:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAMV
        LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +A + K  G+E+              ++ GF+   ++ A+ 
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAMV

Query:  NSLKNNGV
         + + NG+
Subjt:  NSLKNNGV

Arabidopsis top hits

e value

%identity

Alignment

AT3G45020.1 Ribosomal L18p/L5e family protein

2.5e-52

80.99

Show/hide

Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW
        MTVLKRYVLRLF+S+KYITANVVDRNNGRIV TASTVEH+IK SLECGR+CNAKAAA+VGEVLAMRLKV+GL+ GQGRGIH D+ KE+EKKGFK+RTK+W
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIW

Query:  AMVNSLKNNGVKLILDNNVDD
        A++NSL+NNGV LILD++ DD
Subjt:  AMVNSLKNNGVKLILDNNVDD

AT5G27820.1 Ribosomal L18p/L5e family protein

7.3e-04

25.23

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Query:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAMV
        LK YVL++  + K++ A V+      +  +AS+ E +++ +++  R  +  AA+ +G++L  RL +  +       + + + KE    G     K+ A++
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAMV

Query:  NSLKNNGVKLI
        +S++  GVKL+
Subjt:  NSLKNNGVKLI

Sequences

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CDS sequence

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ATGACAGTATTGAAGCGCTATGTGCTGCGATTATTCATATCTTTGAAGTACATAACAGCTAATGTGGTAGATAGAAACAATGGACGGATTGTTGCAACTGCGTCCACAGT
TGAACACTCCATCAAGGGCTCACTTGAATGTGGCCGGTCATGTAACGCTAAGGCAGCAGCAGTTGTTGGAGAGGTGTTGGCTATGCGACTCAAAGTTGATGGTCTCGAAC
AGGGGCAAGGAAGAGGGATTCACGTGGACATAAACAAGGAAGTAGAGAAGAAAGGCTTCAAAAACCGTACAAAAATCTGGGCTATGGTGAACTCACTCAAGAATAACGGA
GTTAAACTAATACTCGACAACAATGTCGATGATGCATCTCAGTCGAGCTATCAATAA

mRNA sequence

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Protein sequence

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MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDINKEVEKKGFKNRTKIWAMVNSLKNNG
VKLILDNNVDDASQSSYQ

CaUC02G046810 (gene) of Watermelon (USVL246-FR2) v1 genome