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CaUC02G047720 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC02G047720
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionPoly(A)-specific ribonuclease
Genome locationCiama_Chr02:35496895..35497074
RNA-Seq ExpressionCaUC02G047720
SyntenyCaUC02G047720
Gene Ontology termsGO:0043928 - exonucleolytic catabolism of deadenylated mRNA (biological process)
GO:0090503 - RNA phosphodiester bond hydrolysis, exonucleolytic (biological process)
GO:0000932 - P-body (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0030015 - CCR4-NOT core complex (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004535 - poly(A)-specific ribonuclease activity (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR039637 - CCR4-NOT transcription complex subunit 7/8/Pop2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_009616495.1 probable CCR4-associated factor 1 homolog 9 [Nicotiana tomentosiformis]3.7e-2187.72Show/hide
Query:  LDRLANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGPEKHAGVLYVLEVY
        LDR+A+TLAVDRAVGKCHQAGSDSLLTW AFQKMRD+YF+KDGPEKHAGVLY LE Y
Subjt:  LDRLANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGPEKHAGVLYVLEVY

XP_009804843.1 PREDICTED: probable CCR4-associated factor 1 homolog 9 [Nicotiana sylvestris]1.1e-2085.96Show/hide
Query:  LDRLANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGPEKHAGVLYVLEVY
        LDR+A+TLAVDR VGKCHQAGSDSLLTW AFQKMRD+YF+KDGPEKHAGVLY LE Y
Subjt:  LDRLANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGPEKHAGVLYVLEVY

XP_016511744.1 PREDICTED: probable CCR4-associated factor 1 homolog 9 [Nicotiana tabacum]3.7e-2187.72Show/hide
Query:  LDRLANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGPEKHAGVLYVLEVY
        LDR+A+TLAVDRAVGKCHQAGSDSLLTW AFQKMRD+YF+KDGPEKHAGVLY LE Y
Subjt:  LDRLANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGPEKHAGVLYVLEVY

XP_019255787.1 PREDICTED: probable CCR4-associated factor 1 homolog 11 [Nicotiana attenuata]1.1e-2085.96Show/hide
Query:  LDRLANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGPEKHAGVLYVLEVY
        LDR+A+TLAVDRAVGKCHQAGSDSLLTW AFQKMRD+YF++DGPEKHAGVLY LE Y
Subjt:  LDRLANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGPEKHAGVLYVLEVY

XP_038901771.1 probable CCR4-associated factor 1 homolog 11 [Benincasa hispida]6.4e-2191.23Show/hide
Query:  LDRLANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGPEKHAGVLYVLEVY
        LDR+A TLAVDRAVGK HQAGSDSLLTWQAFQKMRDVYF KDGPEKHAGVLY LEVY
Subjt:  LDRLANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGPEKHAGVLYVLEVY

TrEMBL top hitse value%identityAlignment
A0A1J6HX65 Poly(A)-specific ribonuclease5.2e-2185.96Show/hide
Query:  LDRLANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGPEKHAGVLYVLEVY
        LDR+A+TLAVDRAVGKCHQAGSDSLLTW AFQKMRD+YF++DGPEKHAGVLY LE Y
Subjt:  LDRLANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGPEKHAGVLYVLEVY

A0A1S4C577 Poly(A)-specific ribonuclease5.2e-2185.96Show/hide
Query:  LDRLANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGPEKHAGVLYVLEVY
        LDR+A+TLAVDR VGKCHQAGSDSLLTW AFQKMRD+YF+KDGPEKHAGVLY LE Y
Subjt:  LDRLANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGPEKHAGVLYVLEVY

A0A1S4DET8 Poly(A)-specific ribonuclease1.8e-2187.72Show/hide
Query:  LDRLANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGPEKHAGVLYVLEVY
        LDR+A+TLAVDRAVGKCHQAGSDSLLTW AFQKMRD+YF+KDGPEKHAGVLY LE Y
Subjt:  LDRLANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGPEKHAGVLYVLEVY

A0A1U7YP26 Poly(A)-specific ribonuclease5.2e-2185.96Show/hide
Query:  LDRLANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGPEKHAGVLYVLEVY
        LDR+A+TLAVDR VGKCHQAGSDSLLTW AFQKMRD+YF+KDGPEKHAGVLY LE Y
Subjt:  LDRLANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGPEKHAGVLYVLEVY

A0A6J1K4S7 Poly(A)-specific ribonuclease6.9e-2189.47Show/hide
Query:  LDRLANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGPEKHAGVLYVLEVY
        L+R+A TLAVDRAVGKCHQAGSDSLLTW AFQKMRDVYF KDGPEKHAGVLY LEVY
Subjt:  LDRLANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGPEKHAGVLYVLEVY

SwissProt top hitse value%identityAlignment
Q9FMS6 Probable CCR4-associated factor 1 homolog 116.6e-2178.95Show/hide
Query:  LDRLANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGPEKHAGVLYVLEVY
        LDR+A +L V+RAVGKCHQAGSDSLLTWQAFQ+MRD+YF++DG EKHAGVLY LEV+
Subjt:  LDRLANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGPEKHAGVLYVLEVY

Q9LEU4 Probable CCR4-associated factor 1 homolog 108.4e-0855.36Show/hide
Query:  LDRLANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGPEKHAGVLYVLEV
        L+RLA  + V+R VG CHQAGSDSLLT  +F+K+++ YF     EK+ GVLY L V
Subjt:  LDRLANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGPEKHAGVLYVLEV

Q9LXM2 Probable CCR4-associated factor 1 homolog 91.0e-2180.7Show/hide
Query:  LDRLANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGPEKHAGVLYVLEVY
        LDR+A TL V+RAVGKCHQAGSDSLLTW AFQ+MRD+YF++DGPEKHAGVLY LEV+
Subjt:  LDRLANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGPEKHAGVLYVLEVY

Q9SAI2 Probable CCR4-associated factor 1 homolog 61.2e-0654.39Show/hide
Query:  LDRLANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGP-EKHAGVLYVLEV
        L++LA  L V+R VG CHQAGSDSLLT   F+K+++ +F+  GP  K++GVLY L V
Subjt:  LDRLANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGP-EKHAGVLYVLEV

Q9SKZ2 Probable CCR4-associated factor 1 homolog 77.1e-0753.57Show/hide
Query:  LDRLANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGPEKHAGVLYVLEV
        L++LA  L V+R VG CHQAGSDSLLT   F+K+++ +F+    EK++GVLY L V
Subjt:  LDRLANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGPEKHAGVLYVLEV

Arabidopsis top hitse value%identityAlignment
AT1G80780.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein8.6e-0854.39Show/hide
Query:  LDRLANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGP-EKHAGVLYVLEV
        L++LA  L V+R VG CHQAGSDSLLT   F+K+++ +F+  GP  K++GVLY L V
Subjt:  LDRLANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGP-EKHAGVLYVLEV

AT2G32070.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.0e-0853.57Show/hide
Query:  LDRLANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGPEKHAGVLYVLEV
        L++LA  L V+R VG CHQAGSDSLLT   F+K+++ +F+    EK++GVLY L V
Subjt:  LDRLANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGPEKHAGVLYVLEV

AT3G44260.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein7.2e-2380.7Show/hide
Query:  LDRLANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGPEKHAGVLYVLEVY
        LDR+A TL V+RAVGKCHQAGSDSLLTW AFQ+MRD+YF++DGPEKHAGVLY LEV+
Subjt:  LDRLANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGPEKHAGVLYVLEVY

AT5G10960.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.9e-0955.36Show/hide
Query:  LDRLANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGPEKHAGVLYVLEV
        L+RLA  + V+R VG CHQAGSDSLLT  +F+K+++ YF     EK+ GVLY L V
Subjt:  LDRLANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGPEKHAGVLYVLEV

AT5G22250.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.7e-2278.95Show/hide
Query:  LDRLANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGPEKHAGVLYVLEVY
        LDR+A +L V+RAVGKCHQAGSDSLLTWQAFQ+MRD+YF++DG EKHAGVLY LEV+
Subjt:  LDRLANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGPEKHAGVLYVLEVY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTTGGACCGGCTTGCTAACACGCTTGCGGTGGACCGGGCGGTCGGAAAATGCCACCAAGCCGGTTCTGATAGCTTGCTGACGTGGCAAGCTTTTCAGAAGATGAG
GGACGTCTATTTCTTAAAGGATGGGCCGGAGAAGCACGCCGGGGTTTTGTATGTATTAGAAGTGTATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTTGGACCGGCTTGCTAACACGCTTGCGGTGGACCGGGCGGTCGGAAAATGCCACCAAGCCGGTTCTGATAGCTTGCTGACGTGGCAAGCTTTTCAGAAGATGAG
GGACGTCTATTTCTTAAAGGATGGGCCGGAGAAGCACGCCGGGGTTTTGTATGTATTAGAAGTGTATTAA
Protein sequenceShow/hide protein sequence
MALDRLANTLAVDRAVGKCHQAGSDSLLTWQAFQKMRDVYFLKDGPEKHAGVLYVLEVY