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CaUC02G048190 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC02G048190
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionE3 ubiquitin-protein ligase RNF13 isoform X2
Genome locationCiama_Chr02:36037140..36038602
RNA-Seq ExpressionCaUC02G048190
SyntenyCaUC02G048190
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570419.1 hypothetical protein SDJN03_29334, partial [Cucurbita argyrosperma subsp. sororia]3.9e-0985.37Show/hide
Query:  GDNGYVRAGRQEAQPILRPEFAGASSSREAITKHASKDKTG
        GDNGYVRAGRQEA+P+LRPEF+GASSSRE  TK ASKDKTG
Subjt:  GDNGYVRAGRQEAQPILRPEFAGASSSREAITKHASKDKTG

KAG7010295.1 hypothetical protein SDJN02_27088, partial [Cucurbita argyrosperma subsp. argyrosperma]3.9e-0985.37Show/hide
Query:  GDNGYVRAGRQEAQPILRPEFAGASSSREAITKHASKDKTG
        GDNGYVRAGRQEA+P+LRPEF+GASSSRE  TK ASKDKTG
Subjt:  GDNGYVRAGRQEAQPILRPEFAGASSSREAITKHASKDKTG

XP_022943783.1 uncharacterized protein LOC111448431 [Cucurbita moschata]2.3e-0985.37Show/hide
Query:  GDNGYVRAGRQEAQPILRPEFAGASSSREAITKHASKDKTG
        GDNGYVRAGRQEA+P+LRPEF+GASSSRE  TK ASKDKTG
Subjt:  GDNGYVRAGRQEAQPILRPEFAGASSSREAITKHASKDKTG

XP_022987030.1 uncharacterized protein LOC111484597 [Cucurbita maxima]2.3e-0985.37Show/hide
Query:  GDNGYVRAGRQEAQPILRPEFAGASSSREAITKHASKDKTG
        GDNGYVRAGRQEA+P+LRPEF+GASSSRE  TK ASKDKTG
Subjt:  GDNGYVRAGRQEAQPILRPEFAGASSSREAITKHASKDKTG

XP_023511780.1 uncharacterized protein LOC111776696 [Cucurbita pepo subsp. pepo]3.9e-0985.37Show/hide
Query:  GDNGYVRAGRQEAQPILRPEFAGASSSREAITKHASKDKTG
        GDNGYVRAGRQEA+P+LRPEF+GASSSRE  TK ASKDKTG
Subjt:  GDNGYVRAGRQEAQPILRPEFAGASSSREAITKHASKDKTG

TrEMBL top hitse value%identityAlignment
A0A0A0KK15 RING-type domain-containing protein3.3e-0676.19Show/hide
Query:  GDNGYVRAGRQEAQPILRPEFAGASSSREAITKHA-SKDKTG
        G NGYVRAGRQEA+P+LR EF G SSSRE +TK A SKDKTG
Subjt:  GDNGYVRAGRQEAQPILRPEFAGASSSREAITKHA-SKDKTG

A0A6J1DGD3 uncharacterized protein LOC1110206071.1e-0677.27Show/hide
Query:  GDNGYVRAGRQEAQPILR---PEFAGASSSREAITKHASKDKTG
        GDNGYVRAGRQEA+PI R   PEFA ASSSRE   K ASKDKTG
Subjt:  GDNGYVRAGRQEAQPILR---PEFAGASSSREAITKHASKDKTG

A0A6J1FXD4 uncharacterized protein LOC1114484311.1e-0985.37Show/hide
Query:  GDNGYVRAGRQEAQPILRPEFAGASSSREAITKHASKDKTG
        GDNGYVRAGRQEA+P+LRPEF+GASSSRE  TK ASKDKTG
Subjt:  GDNGYVRAGRQEAQPILRPEFAGASSSREAITKHASKDKTG

A0A6J1JFP2 uncharacterized protein LOC1114845971.1e-0985.37Show/hide
Query:  GDNGYVRAGRQEAQPILRPEFAGASSSREAITKHASKDKTG
        GDNGYVRAGRQEA+P+LRPEF+GASSSRE  TK ASKDKTG
Subjt:  GDNGYVRAGRQEAQPILRPEFAGASSSREAITKHASKDKTG

A0A6J1K158 uncharacterized protein LOC1114907675.7e-0672.73Show/hide
Query:  GDNGYVRAGRQEAQPILR---PEFAGASSSREAITKHASKDKTG
        GDNGYVR GRQEA+P++R   P  AGASSSRE I K ASKDKTG
Subjt:  GDNGYVRAGRQEAQPILR---PEFAGASSSREAITKHASKDKTG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTACAACTACAAGCCTCATTGAGAGAGAAGAAGAAGAATGCTTGAGAATGCAGAAATTGAGTGCTTTGAGATTATTGTTATGTAAGTTTGAAGATCTAATTTTAAC
AACGGGGCATCATCAGATCTCTGAATCAGCACTCGAGGGTGGGGGAGACAATGGATACGTGAGGGCAGGTCGACAAGAAGCCCAACCAATTCTTAGGCCTGAATTTGCTG
GAGCTAGTTCATCAAGGGAGGCTATAACGAAACATGCTTCCAAAGATAAAACAGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTACAACTACAAGCCTCATTGAGAGAGAAGAAGAAGAATGCTTGAGAATGCAGAAATTGAGTGCTTTGAGATTATTGTTATGTAAGTTTGAAGATCTAATTTTAAC
AACGGGGCATCATCAGATCTCTGAATCAGCACTCGAGGGTGGGGGAGACAATGGATACGTGAGGGCAGGTCGACAAGAAGCCCAACCAATTCTTAGGCCTGAATTTGCTG
GAGCTAGTTCATCAAGGGAGGCTATAACGAAACATGCTTCCAAAGATAAAACAGGTTGA
Protein sequenceShow/hide protein sequence
MATTTSLIEREEEECLRMQKLSALRLLLCKFEDLILTTGHHQISESALEGGGDNGYVRAGRQEAQPILRPEFAGASSSREAITKHASKDKTG