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CaUC02G048450 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC02G048450
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionphotosystem II 5 kDa protein, chloroplastic
Genome locationCiama_Chr02:36310380..36310700
RNA-Seq ExpressionCaUC02G048450
SyntenyCaUC02G048450
Gene Ontology termsNA
InterPro domainsIPR040296 - Photosystem II 5kDa protein, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570402.1 Photosystem II 5 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]2.3e-2976.99Show/hide
Query:  MASMAMTASFLPTATTKQPS---TAARRALVIAKASTS----NHTSNVNLESKNVKVEGRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAP
        MASM++TASFLP   T QPS    AARRAL + KASTS    +  SN NLE KNVKVE  QGRRELVAAAVTVAAAT AKAAMADEPPRGS EAKQKYAP
Subjt:  MASMAMTASFLPTATTKQPS---TAARRALVIAKASTS----NHTSNVNLESKNVKVEGRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAP

Query:  ICVTMPTARICRK
        ICVTMPTARICRK
Subjt:  ICVTMPTARICRK

XP_004143237.1 photosystem II 5 kDa protein, chloroplastic [Cucumis sativus]2.1e-3887.74Show/hide
Query:  MASMAMTASFLPTATTKQPSTAARRALVIAKASTSNHTSNVNLESKNVKVEGRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPT
        MASMAMTASFLPT  TKQPS+ ARR L++AKASTSN  SNVN+E KNVKVE RQGRRELVAAAVTVAAATLAKAAMADEP RGSPEAKQKYAPICVTMPT
Subjt:  MASMAMTASFLPTATTKQPSTAARRALVIAKASTSNHTSNVNLESKNVKVEGRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPT

Query:  ARICRK
        ARICRK
Subjt:  ARICRK

XP_008449703.1 PREDICTED: photosystem II 5 kDa protein, chloroplastic [Cucumis melo]4.2e-3989.62Show/hide
Query:  MASMAMTASFLPTATTKQPSTAARRALVIAKASTSNHTSNVNLESKNVKVEGRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPT
        MASMAMTASFLPT  TKQPS   RRAL++AKASTSN TSNVNLE KNVKVE RQGRRELVAAAVTVAAATLAKAAMADEP RGSPEAKQKYAPICVTMPT
Subjt:  MASMAMTASFLPTATTKQPSTAARRALVIAKASTSNHTSNVNLESKNVKVEGRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPT

Query:  ARICRK
        ARICRK
Subjt:  ARICRK

XP_022944588.1 photosystem II 5 kDa protein, chloroplastic [Cucurbita moschata]1.6e-3076.36Show/hide
Query:  MASMAMTASFLPTATTKQPSTAARRALVIAKASTS----NHTSNVNLESKNVKVEGRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICV
        MASM++TASFLP   T+  + AARRAL + KASTS    +  SN NLE KNVKVE  QGRRELVAAAVTVAAAT AKAAMADEPPRGS EAKQKYAPICV
Subjt:  MASMAMTASFLPTATTKQPSTAARRALVIAKASTS----NHTSNVNLESKNVKVEGRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICV

Query:  TMPTARICRK
        TMPTARICRK
Subjt:  TMPTARICRK

XP_038901593.1 photosystem II 5 kDa protein, chloroplastic [Benincasa hispida]2.4e-3990.57Show/hide
Query:  MASMAMTASFLPTATTKQPSTAARRALVIAKASTSNHTSNVNLESKNVKVEGRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPT
        MASMAMTASFLP    KQPSTAARRALV+AKASTS+  SNVNLE KNVKVE RQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPT
Subjt:  MASMAMTASFLPTATTKQPSTAARRALVIAKASTSNHTSNVNLESKNVKVEGRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPT

Query:  ARICRK
        ARICRK
Subjt:  ARICRK

TrEMBL top hitse value%identityAlignment
A0A0A0KIB2 Uncharacterized protein1.0e-3887.74Show/hide
Query:  MASMAMTASFLPTATTKQPSTAARRALVIAKASTSNHTSNVNLESKNVKVEGRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPT
        MASMAMTASFLPT  TKQPS+ ARR L++AKASTSN  SNVN+E KNVKVE RQGRRELVAAAVTVAAATLAKAAMADEP RGSPEAKQKYAPICVTMPT
Subjt:  MASMAMTASFLPTATTKQPSTAARRALVIAKASTSNHTSNVNLESKNVKVEGRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPT

Query:  ARICRK
        ARICRK
Subjt:  ARICRK

A0A1S3BML8 photosystem II 5 kDa protein, chloroplastic2.0e-3989.62Show/hide
Query:  MASMAMTASFLPTATTKQPSTAARRALVIAKASTSNHTSNVNLESKNVKVEGRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPT
        MASMAMTASFLPT  TKQPS   RRAL++AKASTSN TSNVNLE KNVKVE RQGRRELVAAAVTVAAATLAKAAMADEP RGSPEAKQKYAPICVTMPT
Subjt:  MASMAMTASFLPTATTKQPSTAARRALVIAKASTSNHTSNVNLESKNVKVEGRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPT

Query:  ARICRK
        ARICRK
Subjt:  ARICRK

A0A5A7TID9 Photosystem II 5 kDa protein2.0e-3989.62Show/hide
Query:  MASMAMTASFLPTATTKQPSTAARRALVIAKASTSNHTSNVNLESKNVKVEGRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPT
        MASMAMTASFLPT  TKQPS   RRAL++AKASTSN TSNVNLE KNVKVE RQGRRELVAAAVTVAAATLAKAAMADEP RGSPEAKQKYAPICVTMPT
Subjt:  MASMAMTASFLPTATTKQPSTAARRALVIAKASTSNHTSNVNLESKNVKVEGRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPT

Query:  ARICRK
        ARICRK
Subjt:  ARICRK

A0A6J1FY72 photosystem II 5 kDa protein, chloroplastic7.7e-3176.36Show/hide
Query:  MASMAMTASFLPTATTKQPSTAARRALVIAKASTS----NHTSNVNLESKNVKVEGRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICV
        MASM++TASFLP   T+  + AARRAL + KASTS    +  SN NLE KNVKVE  QGRRELVAAAVTVAAAT AKAAMADEPPRGS EAKQKYAPICV
Subjt:  MASMAMTASFLPTATTKQPSTAARRALVIAKASTS----NHTSNVNLESKNVKVEGRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICV

Query:  TMPTARICRK
        TMPTARICRK
Subjt:  TMPTARICRK

A0A6J1J874 photosystem II 5 kDa protein, chloroplastic7.7e-3176.36Show/hide
Query:  MASMAMTASFLPTATTKQPSTAARRALVIAKASTS----NHTSNVNLESKNVKVEGRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICV
        MASM++TASFLP   T+  + AARRAL + KASTS    +  SN NLE KNVKVE  QGRRELVAAAVTVAAAT AKAAMADEPPRGS EAKQKYAPICV
Subjt:  MASMAMTASFLPTATTKQPSTAARRALVIAKASTS----NHTSNVNLESKNVKVEGRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICV

Query:  TMPTARICRK
        TMPTARICRK
Subjt:  TMPTARICRK

SwissProt top hitse value%identityAlignment
B3EWI4 Photosystem II 5 kDa protein, chloroplastic3.5e-1250.89Show/hide
Query:  MASMAMTASFL---PTATTKQPSTAARRALVIAKA---STSNHTSNVNLESKNVKVEGRQGRRELVAAAVTVAAATLAKAAMAD-EPPRGSPEAKQKYAP
        MAS+ M +SFL     A  K PS A RR +V+ KA     +N   + N ESKN       GRREL  A    AA ++AK AMAD EP RG+PEAK+KY+ 
Subjt:  MASMAMTASFL---PTATTKQPSTAARRALVIAKA---STSNHTSNVNLESKNVKVEGRQGRRELVAAAVTVAAATLAKAAMAD-EPPRGSPEAKQKYAP

Query:  ICVTMPTARICR
        +CVT PTARICR
Subjt:  ICVTMPTARICR

P31336 Photosystem II 5 kDa protein, chloroplastic1.4e-1349.06Show/hide
Query:  MASMAMTASFLPTAT-TKQPSTAARRALVIAKASTSNHTSNVNLESKNVKVEGRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMP
        MAS+ MT SFL T   TK      +R LV+A A+      +V +  +  K EG  GRRE++ AA   A  ++A  A A EP RGS EAK+ YAP+CVTMP
Subjt:  MASMAMTASFLPTAT-TKQPSTAARRALVIAKASTSNHTSNVNLESKNVKVEGRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMP

Query:  TARICR
        TARICR
Subjt:  TARICR

Q39195 Photosystem II 5 kDa protein, chloroplastic3.1e-1346.73Show/hide
Query:  MASMAMTASFLPTATTKQPSTAARRALVIAKASTSNHTSNVNLESKNVKVEGRQGRRELVAAAVTVAAATLAKAAMA--DEPPRGSPEAKQKYAPICVTM
        MASM MTA+F P A  K PS    R L + +ASTS++T ++ ++ ++        RR+L+  A   A  +LAK AMA  +EP RG+  AK+KYA +CVTM
Subjt:  MASMAMTASFLPTATTKQPSTAARRALVIAKASTSNHTSNVNLESKNVKVEGRQGRRELVAAAVTVAAATLAKAAMA--DEPPRGSPEAKQKYAPICVTM

Query:  PTARICR
        PTA+ICR
Subjt:  PTARICR

Arabidopsis top hitse value%identityAlignment
AT1G51400.1 Photosystem II 5 kD protein2.4e-1651.85Show/hide
Query:  MASMAMTASFLPTATT--KQPSTAARRALVIAKASTSNHTSNVNLESKNVKVEGRQGRRELVAAAVTVAAATLAKAAMA-DEPPRGSPEAKQKYAPICVT
        MASM MT+SFLPT +      S+ +RR+L + KAS S +T+  +LE+K  + +  + RR+LV  A   A  +LAK AMA DEP RG+  AK+KYAP+CVT
Subjt:  MASMAMTASFLPTATT--KQPSTAARRALVIAKASTSNHTSNVNLESKNVKVEGRQGRRELVAAAVTVAAATLAKAAMA-DEPPRGSPEAKQKYAPICVT

Query:  MPTARICR
        MPTA+ICR
Subjt:  MPTARICR

AT3G21055.1 photosystem II subunit T2.2e-1446.73Show/hide
Query:  MASMAMTASFLPTATTKQPSTAARRALVIAKASTSNHTSNVNLESKNVKVEGRQGRRELVAAAVTVAAATLAKAAMA--DEPPRGSPEAKQKYAPICVTM
        MASM MTA+F P A  K PS    R L + +ASTS++T ++ ++ ++        RR+L+  A   A  +LAK AMA  +EP RG+  AK+KYA +CVTM
Subjt:  MASMAMTASFLPTATTKQPSTAARRALVIAKASTSNHTSNVNLESKNVKVEGRQGRRELVAAAVTVAAATLAKAAMA--DEPPRGSPEAKQKYAPICVTM

Query:  PTARICR
        PTA+ICR
Subjt:  PTARICR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCCATGGCTATGACAGCCTCCTTCCTTCCCACCGCCACCACCAAACAACCCTCCACCGCCGCCCGCCGAGCCCTCGTCATCGCCAAGGCCTCGACCTCTAACCA
CACCTCCAATGTCAATTTGGAGAGCAAGAATGTGAAGGTGGAGGGCAGGCAAGGGCGGCGGGAGTTGGTGGCAGCCGCTGTCACGGTGGCAGCAGCGACCTTGGCGAAGG
CGGCAATGGCGGATGAGCCGCCACGTGGCTCCCCCGAAGCCAAGCAGAAGTATGCTCCAATCTGTGTCACAATGCCCACTGCCCGTATTTGCCGCAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTCCATGGCTATGACAGCCTCCTTCCTTCCCACCGCCACCACCAAACAACCCTCCACCGCCGCCCGCCGAGCCCTCGTCATCGCCAAGGCCTCGACCTCTAACCA
CACCTCCAATGTCAATTTGGAGAGCAAGAATGTGAAGGTGGAGGGCAGGCAAGGGCGGCGGGAGTTGGTGGCAGCCGCTGTCACGGTGGCAGCAGCGACCTTGGCGAAGG
CGGCAATGGCGGATGAGCCGCCACGTGGCTCCCCCGAAGCCAAGCAGAAGTATGCTCCAATCTGTGTCACAATGCCCACTGCCCGTATTTGCCGCAAGTGA
Protein sequenceShow/hide protein sequence
MASMAMTASFLPTATTKQPSTAARRALVIAKASTSNHTSNVNLESKNVKVEGRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPTARICRK