CuGenDBv2

Gene ID	CaUC02G048520
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	chaperonin-like RbcX protein 2, chloroplastic
Genome location	Ciama_Chr02:36344431..36346391
RNA-Seq Expression	CaUC02G048520
Synteny	CaUC02G048520
Gene Ontology terms	GO:0006457 - protein folding (biological process) GO:0015977 - carbon fixation (biological process) GO:0015979 - photosynthesis (biological process) GO:0110102 - chloroplast ribulose bisphosphate carboxylase complex assembly (biological process) GO:0044183 - protein folding chaperone (molecular function)
InterPro domains	IPR003435 - Chaperonin-like RbcX IPR038052 - Chaperonin-like RbcX superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7010270.1 Chaperonin-like RbcX protein 2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]

4.1e-86

81.95

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Query:  APVVDSPPCPSLCFDSSPVTKTSPRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRSASGGHRSWRNQRRNWRLVVVNEFAGQYEDSFDDVKM
        APV+DSPPCP LC DSSPVT  S RS GDLVL R+SKAKSHLAVS+ VDLRSSFVNSG EW+ SASGGHR  RNQRRNWRLVVVNEFAGQYE+SFDDVKM
Subjt:  APVVDSPPCPSLCFDSSPVTKTSPRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRSASGGHRSWRNQRRNWRLVVVNEFAGQYEDSFDDVKM

Query:  QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETVI
        QI NYFTYKAVKTVLNQLYEMNPTQYRWFY+FV                 EKQDLAERVMITRLHLYNKWVKKCDHAEIYK ISDENLELMRERLMETVI
Subjt:  QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETVI

Query:  WPSDD
        WPSDD
Subjt:  WPSDD

XP_004142113.1 chaperonin-like RbcX protein 2, chloroplastic [Cucumis sativus]

3.2e-83

82.93

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Query:  APVVDSPPCPSLCFDSSPVTKTSPRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRSASGGHRSWRNQRRNWRLVVVNEFAGQYEDSFDDVKM
        APVVDS P P L FDSSPVT  S RSGGDLVLQRKSKAKS+L VSKSVDLRSSFVN G EW+ SA GG +S RNQRRN RLVVVNEFAGQYEDSFDDVKM
Subjt:  APVVDSPPCPSLCFDSSPVTKTSPRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRSASGGHRSWRNQRRNWRLVVVNEFAGQYEDSFDDVKM

Query:  QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETVI
        QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV                 EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETVI
Subjt:  QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETVI

Query:  WPSDD
        WPSDD
Subjt:  WPSDD

XP_022944576.1 chaperonin-like RbcX protein 2, chloroplastic [Cucurbita moschata]

1.3e-84

81.46

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Query:  APVVDSPPCPSLCFDSSPVTKTSPRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRSASGGHRSWRNQRRNWRLVVVNEFAGQYEDSFDDVKM
        APV+DSPPCP LC DSSPVT  S RS GDLVL R+SKAKSHLAVS+ VDLRSSFVNSG EW+ SASGGHR  RNQRRN RLVVVNEFAGQYE+SFDDVKM
Subjt:  APVVDSPPCPSLCFDSSPVTKTSPRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRSASGGHRSWRNQRRNWRLVVVNEFAGQYEDSFDDVKM

Query:  QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETVI
        QI NYFTYKAVKTVLNQLYEMNPTQYRWFY+FV                 EKQDLAERVMITRLHLYNKWVKKCDHAEIYK ISDENLELMRERLMETVI
Subjt:  QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETVI

Query:  WPSDD
        WPSDD
Subjt:  WPSDD

XP_023512052.1 chaperonin-like RbcX protein 2, chloroplastic [Cucurbita pepo subsp. pepo]

1.0e-84

80.38

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Query:  FSPRAPVVDSPPCPSLCFDSSPVTKTSPRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRSASGGHRSWRNQRRNWRLVVVNEFAGQYEDSFD
        F   APV+DSPPCP LC DSSPVT  S RS GDLVL R+SKAKSHLAVS+ VDLRSSFVNSG EW+ SASGGHR  RNQRRN RLVVVNEFAGQYE+SFD
Subjt:  FSPRAPVVDSPPCPSLCFDSSPVTKTSPRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRSASGGHRSWRNQRRNWRLVVVNEFAGQYEDSFD

Query:  DVKMQIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLM
        DVKMQI NYFTYKAVKTVLNQLYEMNPTQYRWFY+FV                 EKQDLAERVMITRLHLYNKWVKKCDHAEIYK ISDENLELMRERLM
Subjt:  DVKMQIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLM

Query:  ETVIWPSDD
        ETVIWPSDD
Subjt:  ETVIWPSDD

XP_038902700.1 chaperonin-like RbcX protein 2, chloroplastic [Benincasa hispida]

4.8e-87

85.37

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Query:  APVVDSPPCPSLCFDSSPVTKTSPRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRSASGGHRSWRNQRRNWRLVVVNEFAGQYEDSFDDVKM
        APVVDSPPCPSLC DSSPVT TS RSGGDLVLQRKS   SHLAVSKSVDLRSSFVNS GEWR SASGG+RS RNQRRN RLVVVNEFAGQYEDSFDDVKM
Subjt:  APVVDSPPCPSLCFDSSPVTKTSPRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRSASGGHRSWRNQRRNWRLVVVNEFAGQYEDSFDDVKM

Query:  QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETVI
        QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV                 EKQDLAERVMITRLHLYNKWVKKCDHAE+YK ISDENLELMRERLMETVI
Subjt:  QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETVI

Query:  WPSDD
        WPSDD
Subjt:  WPSDD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KX19 Uncharacterized protein

1.6e-83

82.93

Show/hide

Query:  APVVDSPPCPSLCFDSSPVTKTSPRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRSASGGHRSWRNQRRNWRLVVVNEFAGQYEDSFDDVKM
        APVVDS P P L FDSSPVT  S RSGGDLVLQRKSKAKS+L VSKSVDLRSSFVN G EW+ SA GG +S RNQRRN RLVVVNEFAGQYEDSFDDVKM
Subjt:  APVVDSPPCPSLCFDSSPVTKTSPRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRSASGGHRSWRNQRRNWRLVVVNEFAGQYEDSFDDVKM

Query:  QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETVI
        QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV                 EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETVI
Subjt:  QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETVI

Query:  WPSDD
        WPSDD
Subjt:  WPSDD

A0A5A7TJ10 RcbX domain-containing protein

2.5e-81

80.49

Show/hide

Query:  APVVDSPPCPSLCFDSSPVTKTSPRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRSASGGHRSWRNQRRNWRLVVVNEFAGQYEDSFDDVKM
        APV+DSPP P   FDSSPVT  S RSGGDLVLQRKSK KS+  VSKSVDLRSSFVN G EW+ SA G  RS RNQRRN RLV+VNEFAGQYEDSFDDVKM
Subjt:  APVVDSPPCPSLCFDSSPVTKTSPRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRSASGGHRSWRNQRRNWRLVVVNEFAGQYEDSFDDVKM

Query:  QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETVI
        QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV                 EKQDLAERVMITRLHLYNKWVKKCDHAEIYK ISDENLELMRERLMETVI
Subjt:  QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETVI

Query:  WPSDD
        WPSDD
Subjt:  WPSDD

A0A5D3BAI6 RcbX domain-containing protein

7.3e-81

Show/hide

Query:  APVVDSPPCPSLCFDSSPVTKTSPRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRSASGGHRSWRNQRRNWRLVVVNEFAGQYEDSFDDVKM
        APV+DSPP P   FDSSPVT  S RSGGDLVLQRKSK KS+  VSKSVDLRSSFVN G EW+ SA G  +S RNQRRN RLV+VNEFAGQYEDSFDDVKM
Subjt:  APVVDSPPCPSLCFDSSPVTKTSPRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRSASGGHRSWRNQRRNWRLVVVNEFAGQYEDSFDDVKM

Query:  QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETVI
        QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV                 EKQDLAERVMITRLHLYNKWVKKCDHAEIYK ISDENLELMRERLMETVI
Subjt:  QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETVI

Query:  WPSDD
        WPSDD
Subjt:  WPSDD

A0A6J1FUS7 chaperonin-like RbcX protein 2, chloroplastic

6.3e-85

81.46

Show/hide

Query:  APVVDSPPCPSLCFDSSPVTKTSPRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRSASGGHRSWRNQRRNWRLVVVNEFAGQYEDSFDDVKM
        APV+DSPPCP LC DSSPVT  S RS GDLVL R+SKAKSHLAVS+ VDLRSSFVNSG EW+ SASGGHR  RNQRRN RLVVVNEFAGQYE+SFDDVKM
Subjt:  APVVDSPPCPSLCFDSSPVTKTSPRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRSASGGHRSWRNQRRNWRLVVVNEFAGQYEDSFDDVKM

Query:  QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETVI
        QI NYFTYKAVKTVLNQLYEMNPTQYRWFY+FV                 EKQDLAERVMITRLHLYNKWVKKCDHAEIYK ISDENLELMRERLMETVI
Subjt:  QIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETVI

Query:  WPSDD
        WPSDD
Subjt:  WPSDD

A0A6J1JGU0 chaperonin-like RbcX protein 2, chloroplastic

1.0e-82

78.95

Show/hide

Query:  FSPRAPVVDSPPCPSLCFDSSPVTKTSPRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRSASGGHRSWRNQRRNWRLVVVNEFAGQYEDSFD
        F+  APV+DS PCP LC DSSPVT TS RS GDLVL R+SKAKSHLAVS+ VDLRSSFVNS  EW+ SA+ GHR WRNQRRN RLVVVNEFAGQYE+SFD
Subjt:  FSPRAPVVDSPPCPSLCFDSSPVTKTSPRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRSASGGHRSWRNQRRNWRLVVVNEFAGQYEDSFD

Query:  DVKMQIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLM
        DVKMQI NYFTYKAVKTVLNQLYEMNPTQYRWFYNFV                 EKQDLAERVMITRLHLYNKWVK+CDHAEIYK IS ENLELMRERLM
Subjt:  DVKMQIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLM

Query:  ETVIWPSDD
        ETVIWPSDD
Subjt:  ETVIWPSDD

SwissProt top hits

e value

%identity

Alignment

Q44212 RuBisCO chaperone RbcX

6.3e-05

32.65

Show/hide

Query:  DVKMQIQNYFTYKAVKTVLNQLYEMNPTQYRWFYN----------------FVEKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERL
        D    +Q+Y TY+A++TVL QL E NP    W +N                F+EK DLA R+M  R H+  + + +     +  GI   N+E  R+ L
Subjt:  DVKMQIQNYFTYKAVKTVLNQLYEMNPTQYRWFYN----------------FVEKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERL

Q8L9X2 Chaperonin-like RbcX protein 2, chloroplastic

3.4e-43

50.97

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Query:  APVVDSPPCPSLCFDSSPVTKTSPRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRSASGGHRSWRNQRRNWRLVVVNE-FAGQYEDSFDDVK
        +PV+DS   P LC D+   T T  R             K  L  +++++L SSF  S   +R S     R     R++ +L++VNE  AG Y+D+F DV+
Subjt:  APVVDSPPCPSLCFDSSPVTKTSPRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRSASGGHRSWRNQRRNWRLVVVNE-FAGQYEDSFDDVK

Query:  MQIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETV
         QI NYFTYKAV+TVL+QLYEMNP QY WFYN +                 E Q+LAERVMITRLHLY KW+KKCDH +IY+ ISDENL LMRERLMETV
Subjt:  MQIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETV

Query:  IWPSDD
        IWPSDD
Subjt:  IWPSDD

Arabidopsis top hits

e value

%identity

Alignment

AT5G19855.1 Chaperonin-like RbcX protein

2.4e-44

50.97

Show/hide

Query:  APVVDSPPCPSLCFDSSPVTKTSPRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRSASGGHRSWRNQRRNWRLVVVNE-FAGQYEDSFDDVK
        +PV+DS   P LC D+   T T  R             K  L  +++++L SSF  S   +R S     R     R++ +L++VNE  AG Y+D+F DV+
Subjt:  APVVDSPPCPSLCFDSSPVTKTSPRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRSASGGHRSWRNQRRNWRLVVVNE-FAGQYEDSFDDVK

Query:  MQIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETV
         QI NYFTYKAV+TVL+QLYEMNP QY WFYN +                 E Q+LAERVMITRLHLY KW+KKCDH +IY+ ISDENL LMRERLMETV
Subjt:  MQIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFV-----------------EKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETV

Query:  IWPSDD
        IWPSDD
Subjt:  IWPSDD

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTTTGTTGACAATTTACATGCATATTTTGGGAGAAAGAAAGAAAAAGAAATTAACGACGACAAATCTCAAGAATATGAAACCTTCTTTCATCTCTTTCTTGTACAATT
CCAAATTGAATTCTCGAAGTTTCAGTTTCTCACGGTAGCTGAATCTTTGACCCAATCCCCTATTCTCCAGAACCCATTTCCAGTTCTTTATATTAACTTGATTCTCTCTT
CAATTGCTTTATTACCACTCCCTAAATCCTGCTTCTCCCCACGTGCACCGGTGGTCGACTCGCCGCCATGTCCGTCTTTGTGTTTCGACTCATCGCCGGTTACCAAAACG
AGCCCCAGAAGTGGTGGGGATTTGGTTTTGCAAAGGAAATCTAAGGCTAAGAGTCATTTGGCCGTGTCTAAATCGGTGGATTTGAGAAGTTCGTTTGTCAATTCAGGCGG
CGAGTGGCGGCGCTCGGCCAGTGGTGGCCACCGGAGTTGGAGGAACCAACGGAGGAATTGGAGGCTTGTTGTTGTCAATGAATTTGCAGGGCAGTATGAGGACAGTTTTG
ATGATGTGAAAATGCAAATACAGAATTATTTCACATACAAAGCTGTGAAGACAGTCCTAAATCAGCTTTATGAGATGAATCCAACACAATACAGATGGTTTTATAACTTT
GTTGAGAAGCAAGATCTGGCTGAGAGAGTGATGATAACAAGGCTTCATCTCTATAACAAATGGGTTAAGAAATGTGATCATGCTGAAATATACAAAGGGATATCTGATGA
GAACTTGGAGTTGATGCGAGAGCGACTAATGGAGACTGTGATATGGCCTTCCGACGACTAG

mRNA sequence

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Protein sequence

Show/hide protein sequence

MFVDNLHAYFGRKKEKEINDDKSQEYETFFHLFLVQFQIEFSKFQFLTVAESLTQSPILQNPFPVLYINLILSSIALLPLPKSCFSPRAPVVDSPPCPSLCFDSSPVTKT
SPRSGGDLVLQRKSKAKSHLAVSKSVDLRSSFVNSGGEWRRSASGGHRSWRNQRRNWRLVVVNEFAGQYEDSFDDVKMQIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNF
VEKQDLAERVMITRLHLYNKWVKKCDHAEIYKGISDENLELMRERLMETVIWPSDD

CaUC02G048520 (gene) of Watermelon (USVL246-FR2) v1 genome