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CaUC02G049890 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC02G049890
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionRibulose bisphosphate carboxylase large chain
Genome locationCiama_Chr02:37595556..37596137
RNA-Seq ExpressionCaUC02G049890
SyntenyCaUC02G049890
Gene Ontology termsGO:0009767 - photosynthetic electron transport chain (biological process)
GO:0009853 - photorespiration (biological process)
GO:0019253 - reductive pentose-phosphate cycle (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0009521 - photosystem (cellular component)
GO:0000287 - magnesium ion binding (molecular function)
GO:0004497 - monooxygenase activity (molecular function)
GO:0016168 - chlorophyll binding (molecular function)
GO:0016984 - ribulose-bisphosphate carboxylase activity (molecular function)
InterPro domainsIPR000932 - Photosystem antenna protein-like
IPR036001 - Photosystem antenna protein-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ACR07832.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Roucheria schomburgkii]1.6e-0596.3Show/hide
Query:  SEWNPELAAACEVWKEIKFEFEAMDTL
        S+WNPELAAACEVWKEIKFEFEAMDTL
Subjt:  SEWNPELAAACEVWKEIKFEFEAMDTL
QPN54420.1 ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit [Arceuthobium chinense]1.6e-0592.86Show/hide
Query:  TSEWNPELAAACEVWKEIKFEFEAMDTL
        TS+W+PELAAACEVWKEIKFEFEAMDTL
Subjt:  TSEWNPELAAACEVWKEIKFEFEAMDTL
QPN54428.1 ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit [Arceuthobium minutissimum]1.6e-0592.86Show/hide
Query:  TSEWNPELAAACEVWKEIKFEFEAMDTL
        TS+W+PELAAACEVWKEIKFEFEAMDTL
Subjt:  TSEWNPELAAACEVWKEIKFEFEAMDTL
QPN54434.1 ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit [Arceuthobium oxycedri]1.6e-0592.86Show/hide
Query:  TSEWNPELAAACEVWKEIKFEFEAMDTL
        TS+W+PELAAACEVWKEIKFEFEAMDTL
Subjt:  TSEWNPELAAACEVWKEIKFEFEAMDTL
QPN54447.1 ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit [Arceuthobium sichuanense]1.6e-0592.86Show/hide
Query:  TSEWNPELAAACEVWKEIKFEFEAMDTL
        TS+W+PELAAACEVWKEIKFEFEAMDTL
Subjt:  TSEWNPELAAACEVWKEIKFEFEAMDTL
TrEMBL top hitse value%identityAlignment
A0A7T1HF45 Ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit7.7e-0692.86Show/hide
Query:  TSEWNPELAAACEVWKEIKFEFEAMDTL
        TS+W+PELAAACEVWKEIKFEFEAMDTL
Subjt:  TSEWNPELAAACEVWKEIKFEFEAMDTL
A0A7T1HF50 Ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit7.7e-0692.86Show/hide
Query:  TSEWNPELAAACEVWKEIKFEFEAMDTL
        TS+W+PELAAACEVWKEIKFEFEAMDTL
Subjt:  TSEWNPELAAACEVWKEIKFEFEAMDTL
A0A7T1HF54 Ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit7.7e-0692.86Show/hide
Query:  TSEWNPELAAACEVWKEIKFEFEAMDTL
        TS+W+PELAAACEVWKEIKFEFEAMDTL
Subjt:  TSEWNPELAAACEVWKEIKFEFEAMDTL
A0A7T1M874 Ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit7.7e-0692.86Show/hide
Query:  TSEWNPELAAACEVWKEIKFEFEAMDTL
        TS+W+PELAAACEVWKEIKFEFEAMDTL
Subjt:  TSEWNPELAAACEVWKEIKFEFEAMDTL
A0A7T1M8A3 Ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit7.7e-0692.86Show/hide
Query:  TSEWNPELAAACEVWKEIKFEFEAMDTL
        TS+W+PELAAACEVWKEIKFEFEAMDTL
Subjt:  TSEWNPELAAACEVWKEIKFEFEAMDTL
SwissProt top hitse value%identityAlignment
O19872 Ribulose bisphosphate carboxylase large chain (Fragment)8.0e-0892.59Show/hide
Query:  SEWNPELAAACEVWKEIKFEFEAMDTL
        S+W+PELAAACEVWKEIKFEFEAMDTL
Subjt:  SEWNPELAAACEVWKEIKFEFEAMDTL
P28378 Ribulose bisphosphate carboxylase large chain (Fragment)8.0e-0892.59Show/hide
Query:  SEWNPELAAACEVWKEIKFEFEAMDTL
        S+W+PELAAACEVWKEIKFEFEAMDTL
Subjt:  SEWNPELAAACEVWKEIKFEFEAMDTL
P28385 Ribulose bisphosphate carboxylase large chain (Fragment)8.0e-0892.59Show/hide
Query:  SEWNPELAAACEVWKEIKFEFEAMDTL
        S+W+PELAAACEVWKEIKFEFEAMDTL
Subjt:  SEWNPELAAACEVWKEIKFEFEAMDTL
Q05987 Ribulose bisphosphate carboxylase large chain (Fragment)8.0e-0892.59Show/hide
Query:  SEWNPELAAACEVWKEIKFEFEAMDTL
        S+W+PELAAACEVWKEIKFEFEAMDTL
Subjt:  SEWNPELAAACEVWKEIKFEFEAMDTL
Q7YJW4 Ribulose bisphosphate carboxylase large chain8.0e-0892.59Show/hide
Query:  SEWNPELAAACEVWKEIKFEFEAMDTL
        S+W+PELAAACEVWKEIKFEFEAMDTL
Subjt:  SEWNPELAAACEVWKEIKFEFEAMDTL
Arabidopsis top hitse value%identityAlignment
ATCG00490.1 ribulose-bisphosphate carboxylases6.5e-0569.23Show/hide
Query:  EWNPELAAACEVWKEIKFEFEAMDTL
        +W+PELAAACEVWKEI F F  +D L
Subjt:  EWNPELAAACEVWKEIKFEFEAMDTL
ATCG00680.1 photosystem II reaction center protein B9.0e-0772.97Show/hide
Query:  VVLVDRDGIVKVDVPFRRAESKYS-------VEFYGG
        VVLVD DGIV+ DVPFRRAESKYS       VEFYGG
Subjt:  VVLVDRDGIVKVDVPFRRAESKYS-------VEFYGG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTCAATATTGGTAAGAGGTGACATAATCAAAACTTCATATTTTGAAAACATAACAATTGCTTCGAAAGACTTCCCAAGACGGAGGCTTTATCTGGCTAGG
CAATCTCTGTGGCGAGCATCTGGAATAACTAGTGAATGGAATCCTGAACTAGCTGCTGCATGTGAAGTATGGAAGGAGATCAAATTTGAATTTGAGGCAATGGAT
ACTTTGATTGAGCCGACCGTTGTTTTGGTAGACAGAGACGGAATTGTTAAAGTCGATGTTCCTTTTCGAAGAGCAGAATCGAAGTATAGTGTTGAGTTCTATGGC
GGTGTTCGATACTTCGTATATCAGAAAAAGGAAAGATCCGTCAGGTTCAGGATTGATCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTTCAATATTGGTAAGAGGTGACATAATCAAAACTTCATATTTTGAAAACATAACAATTGCTTCGAAAGACTTCCCAAGACGGAGGCTTTATCTGGCTAGG
CAATCTCTGTGGCGAGCATCTGGAATAACTAGTGAATGGAATCCTGAACTAGCTGCTGCATGTGAAGTATGGAAGGAGATCAAATTTGAATTTGAGGCAATGGAT
ACTTTGATTGAGCCGACCGTTGTTTTGGTAGACAGAGACGGAATTGTTAAAGTCGATGTTCCTTTTCGAAGAGCAGAATCGAAGTATAGTGTTGAGTTCTATGGC
GGTGTTCGATACTTCGTATATCAGAAAAAGGAAAGATCCGTCAGGTTCAGGATTGATCTTTAA
Protein sequenceShow/hide protein sequence
MGSILVRGDIIKTSYFENITIASKDFPRRRLYLARQSLWRASGITSEWNPELAAACEVWKEIKFEFEAMDTLIEPTVVLVDRDGIVKVDVPFRRAESKYSVEFYG
GVRYFVYQKKERSVRFRIDL