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CaUC03G055100 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC03G055100
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionAminoacyl-tRNA ligase
Genome locationCiama_Chr03:5585674..5586477
RNA-Seq ExpressionCaUC03G055100
SyntenyCaUC03G055100
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037097.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]5.4e-1524.47Show/hide
Query:  MFDGTDSLVWIFKMERYFEVHHMDDISRMMEIILLCMSGQALAWFQC------FRNWG-------------------------KPPESWDEFRPALYMLI
        +F G D   W+F+ ERYF++H + D  +M+ +  +   G AL W++       F +W                          K   + D++R     L+
Subjt:  MFDGTDSLVWIFKMERYFEVHHMDDISRMMEIILLCMSGQALAWFQC------FRNWG-------------------------KPPESWDEFRPALYMLI

Query:  WRQS---QRVLQFHCLAARGEYSRGEVRKLHPKGILDIMDRARLVENK---INVVALN------------------------------------------
           S     V++   +     + R EVR   PKG+ ++M+ A+LVEN+    N V LN                                          
Subjt:  WRQS---QRVLQFHCLAARGEYSRGEVRKLHPKGILDIMDRARLVENK---INVVALN------------------------------------------

Query:  -----SAKRIGRVKERCVVVKIVDWTHYNLISKNLATDMKLPLDMYGDYSVVLGC--------------CKIGNDRYVEDFFPLQMGEDDEVILGNLWLV
             + K  G+++ER V++ I     +N IS+ L   ++LP+   G Y V+LG                ++ N +  E+F PL++G  D V+LG  WL 
Subjt:  -----SAKRIGRVKERCVVVKIVDWTHYNLISKNLATDMKLPLDMYGDYSVVLGC--------------CKIGNDRYVEDFFPLQMGEDDEVILGNLWLV

Query:  ALGKMEVDWKDLPMKLKAGKEIVTLRKDPSL
        +LG   VDWK+L +   +  + + ++ DPSL
Subjt:  ALGKMEVDWKDLPMKLKAGKEIVTLRKDPSL

KAA0056890.1 aminoacyl-tRNA ligase [Cucumis melo var. makuwa]6.3e-8863.93Show/hide
Query:  MFDGTDSLVWIFKMERYFEVHHMDDISRMMEIILLCMSGQALAWFQCFRNWGKPPESWDEFRPALYMLIWRQSQRVLQFHCLAARG---EYS--------
        MFDGTD+L+WI KMERYFEVHH+DDI+RMM+ ILLCMSGQALAWF+CF+NWGKPPESWDEFR +LYM          +F  L   G   EY         
Subjt:  MFDGTDSLVWIFKMERYFEVHHMDDISRMMEIILLCMSGQALAWFQCFRNWGKPPESWDEFRPALYMLIWRQSQRVLQFHCLAARG---EYS--------

Query:  ----------------------RGEVRKLHPKGILDIMDRARLVENKINVVALNSAKRIGRVKERCVVVKIVDWTHYNLISKNLATDMKLPLDMYGDYSV
                              R +VR LHPK ILDIM RARL E K N VALNS KR G VKER V+VK+V WT YNLISKNLATD+KL LDMYGDYSV
Subjt:  ----------------------RGEVRKLHPKGILDIMDRARLVENKINVVALNSAKRIGRVKERCVVVKIVDWTHYNLISKNLATDMKLPLDMYGDYSV

Query:  VLGCCK--------------IGNDRYVEDFFPLQMGEDDEVILGNLWLVALGKMEVDWKDLPMKLKAGKEIVTLRKDPSL
        VLG  K              IGND YVEDFFPLQMGEDDEVILGNLWLVALGKMEVDWK+LPMKLK GKE VTLRKDP L
Subjt:  VLGCCK--------------IGNDRYVEDFFPLQMGEDDEVILGNLWLVALGKMEVDWKDLPMKLKAGKEIVTLRKDPSL

KAE8652678.1 hypothetical protein Csa_013756 [Cucumis sativus]1.2e-8361.79Show/hide
Query:  MFDGTDSLVWIFKMERYFEVHHMDDISRMMEIILLCMSGQALAWFQCFRNWGKPPESWDEFRPALYMLI---WRQSQRVLQFHCLAARGEYS--------
        MFDGTD+L+WI KMERYFEVHH+DDI++MME ILLCMSGQALAWF+CF+NWG PPESW EFR +LY       R   R +      + GEY         
Subjt:  MFDGTDSLVWIFKMERYFEVHHMDDISRMMEIILLCMSGQALAWFQCFRNWGKPPESWDEFRPALYMLI---WRQSQRVLQFHCLAARGEYS--------

Query:  ----------------------RGEVRKLHPKGILDIMDRARLVENKINVVALNSAKRIGRVKERCVVVKIVDWTHYNLISKNLATDMKLPLDMYGDYSV
                              RGEVR L  +GILDIM RARL E K N VA NS KR G VKER VVVK+V WT YNLISKNLATD+KL LDMYGDYSV
Subjt:  ----------------------RGEVRKLHPKGILDIMDRARLVENKINVVALNSAKRIGRVKERCVVVKIVDWTHYNLISKNLATDMKLPLDMYGDYSV

Query:  VLGCCK--------------IGNDRYVEDFFPLQMGEDDEVILGNLWLVALGKMEVDWKDLPMKLKAGKEIVTLRKDPSL
        VLG  K              IGN+ Y EDFFPLQMGEDDEVILGNLWLV LGKMEVDWK+L MKL+ GKEIVTLRKDPSL
Subjt:  VLGCCK--------------IGNDRYVEDFFPLQMGEDDEVILGNLWLVALGKMEVDWKDLPMKLKAGKEIVTLRKDPSL

TYK06549.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]3.2e-1524.47Show/hide
Query:  MFDGTDSLVWIFKMERYFEVHHMDDISRMMEIILLCMSGQALAWFQC------FRNWG-------------------------KPPESWDEFRPALYMLI
        +F G D   W+F+ ERYF++H + D  +M+ +  +   G AL W++       F +W                          K   + D++R     L+
Subjt:  MFDGTDSLVWIFKMERYFEVHHMDDISRMMEIILLCMSGQALAWFQC------FRNWG-------------------------KPPESWDEFRPALYMLI

Query:  WRQS---QRVLQFHCLAARGEYSRGEVRKLHPKGILDIMDRARLVENK---INVVALN------------------------------------------
           S     V++   +     + R EVR   PKG+ ++M+ A+LVEN+    N V LN                                          
Subjt:  WRQS---QRVLQFHCLAARGEYSRGEVRKLHPKGILDIMDRARLVENK---INVVALN------------------------------------------

Query:  -----SAKRIGRVKERCVVVKIVDWTHYNLISKNLATDMKLPLDMYGDYSVVLGC--------------CKIGNDRYVEDFFPLQMGEDDEVILGNLWLV
             + K  G+++ER V++ I     +N IS+ L   ++LP+   G Y V+LG                ++ N +  E+F PL++G  D V+LG  WL 
Subjt:  -----SAKRIGRVKERCVVVKIVDWTHYNLISKNLATDMKLPLDMYGDYSVVLGC--------------CKIGNDRYVEDFFPLQMGEDDEVILGNLWLV

Query:  ALGKMEVDWKDLPMKLKAGKEIVTLRKDPSL
        +LG   VDWK+L +   +  + ++++ DPSL
Subjt:  ALGKMEVDWKDLPMKLKAGKEIVTLRKDPSL

XP_016900762.1 PREDICTED: uncharacterized protein LOC107991016 [Cucumis melo]1.5e-8163.16Show/hide
Query:  MFDGTDSLVWIFKMERYFEVHHMDDISRMMEIILLCMSGQALAWFQCFRNWGKPPESWDEFRPALYMLIWRQSQRVLQFHCLAARG---EYS--------
        MFDGTD+L+WI KMERYFEVHH+DDI+RMM+ ILLCMSGQALAWF+CF+NWGKPPESWDEFR +LYM          +F  L   G   EY         
Subjt:  MFDGTDSLVWIFKMERYFEVHHMDDISRMMEIILLCMSGQALAWFQCFRNWGKPPESWDEFRPALYMLIWRQSQRVLQFHCLAARG---EYS--------

Query:  ----------------------RGEVRKLHPKGILDIMDRARLVENKINVVALNSAKRIGRVKERCVVVKIVDWTHYNLISKNLATDMKLPLDMYGDYSV
                              R +VR LHPK ILDIM RARL E K N VALNS KR G VKER V+VK+V WT YNLISKNLATD+KL LDMYGDYSV
Subjt:  ----------------------RGEVRKLHPKGILDIMDRARLVENKINVVALNSAKRIGRVKERCVVVKIVDWTHYNLISKNLATDMKLPLDMYGDYSV

Query:  VLGCCK--------------IGNDRYVEDFFPLQMGEDDEVILGNLWLVALGKMEVDWKDLPMKLK
        VLG  K              IGND YVEDFFPLQMGEDDEVILGNLWLVALGKMEVDWK+LPMKLK
Subjt:  VLGCCK--------------IGNDRYVEDFFPLQMGEDDEVILGNLWLVALGKMEVDWKDLPMKLK

TrEMBL top hitse value%identityAlignment
A0A0A0LUB3 Retrotrans_gag domain-containing protein3.3e-3451.48Show/hide
Query:  MFDGTDSLVWIFKMERYFEVHHMDDISRMMEIILLCMSGQALAWFQCFRNWGKPPESWDEFRPALYMLI---WRQSQRVLQFHCLAARGEYS--------
        MFDGTD+L+WI KMERYFEVHH+DDI++MME ILLCMSGQALAWF+CF+NWG PPESW EFR +LY       R   R +      + GEY         
Subjt:  MFDGTDSLVWIFKMERYFEVHHMDDISRMMEIILLCMSGQALAWFQCFRNWGKPPESWDEFRPALYMLI---WRQSQRVLQFHCLAARGEYS--------

Query:  ----------------------RGEVRKLHPKGILDIMDRARLVENKINVVALNSAKRIGRVKERCVVV
                              RGEVR L  +GILDIM RARL E K N VA NS KR G VKE  +++
Subjt:  ----------------------RGEVRKLHPKGILDIMDRARLVENKINVVALNSAKRIGRVKERCVVV

A0A1S4DXQ7 uncharacterized protein LOC1079910167.2e-8263.16Show/hide
Query:  MFDGTDSLVWIFKMERYFEVHHMDDISRMMEIILLCMSGQALAWFQCFRNWGKPPESWDEFRPALYMLIWRQSQRVLQFHCLAARG---EYS--------
        MFDGTD+L+WI KMERYFEVHH+DDI+RMM+ ILLCMSGQALAWF+CF+NWGKPPESWDEFR +LYM          +F  L   G   EY         
Subjt:  MFDGTDSLVWIFKMERYFEVHHMDDISRMMEIILLCMSGQALAWFQCFRNWGKPPESWDEFRPALYMLIWRQSQRVLQFHCLAARG---EYS--------

Query:  ----------------------RGEVRKLHPKGILDIMDRARLVENKINVVALNSAKRIGRVKERCVVVKIVDWTHYNLISKNLATDMKLPLDMYGDYSV
                              R +VR LHPK ILDIM RARL E K N VALNS KR G VKER V+VK+V WT YNLISKNLATD+KL LDMYGDYSV
Subjt:  ----------------------RGEVRKLHPKGILDIMDRARLVENKINVVALNSAKRIGRVKERCVVVKIVDWTHYNLISKNLATDMKLPLDMYGDYSV

Query:  VLGCCK--------------IGNDRYVEDFFPLQMGEDDEVILGNLWLVALGKMEVDWKDLPMKLK
        VLG  K              IGND YVEDFFPLQMGEDDEVILGNLWLVALGKMEVDWK+LPMKLK
Subjt:  VLGCCK--------------IGNDRYVEDFFPLQMGEDDEVILGNLWLVALGKMEVDWKDLPMKLK

A0A5A7T6B1 Transposon Ty3-G Gag-Pol polyprotein2.6e-1524.47Show/hide
Query:  MFDGTDSLVWIFKMERYFEVHHMDDISRMMEIILLCMSGQALAWFQC------FRNWG-------------------------KPPESWDEFRPALYMLI
        +F G D   W+F+ ERYF++H + D  +M+ +  +   G AL W++       F +W                          K   + D++R     L+
Subjt:  MFDGTDSLVWIFKMERYFEVHHMDDISRMMEIILLCMSGQALAWFQC------FRNWG-------------------------KPPESWDEFRPALYMLI

Query:  WRQS---QRVLQFHCLAARGEYSRGEVRKLHPKGILDIMDRARLVENK---INVVALN------------------------------------------
           S     V++   +     + R EVR   PKG+ ++M+ A+LVEN+    N V LN                                          
Subjt:  WRQS---QRVLQFHCLAARGEYSRGEVRKLHPKGILDIMDRARLVENK---INVVALN------------------------------------------

Query:  -----SAKRIGRVKERCVVVKIVDWTHYNLISKNLATDMKLPLDMYGDYSVVLGC--------------CKIGNDRYVEDFFPLQMGEDDEVILGNLWLV
             + K  G+++ER V++ I     +N IS+ L   ++LP+   G Y V+LG                ++ N +  E+F PL++G  D V+LG  WL 
Subjt:  -----SAKRIGRVKERCVVVKIVDWTHYNLISKNLATDMKLPLDMYGDYSVVLGC--------------CKIGNDRYVEDFFPLQMGEDDEVILGNLWLV

Query:  ALGKMEVDWKDLPMKLKAGKEIVTLRKDPSL
        +LG   VDWK+L +   +  + + ++ DPSL
Subjt:  ALGKMEVDWKDLPMKLKAGKEIVTLRKDPSL

A0A5D3BJD9 Aminoacyl-tRNA ligase3.0e-8863.93Show/hide
Query:  MFDGTDSLVWIFKMERYFEVHHMDDISRMMEIILLCMSGQALAWFQCFRNWGKPPESWDEFRPALYMLIWRQSQRVLQFHCLAARG---EYS--------
        MFDGTD+L+WI KMERYFEVHH+DDI+RMM+ ILLCMSGQALAWF+CF+NWGKPPESWDEFR +LYM          +F  L   G   EY         
Subjt:  MFDGTDSLVWIFKMERYFEVHHMDDISRMMEIILLCMSGQALAWFQCFRNWGKPPESWDEFRPALYMLIWRQSQRVLQFHCLAARG---EYS--------

Query:  ----------------------RGEVRKLHPKGILDIMDRARLVENKINVVALNSAKRIGRVKERCVVVKIVDWTHYNLISKNLATDMKLPLDMYGDYSV
                              R +VR LHPK ILDIM RARL E K N VALNS KR G VKER V+VK+V WT YNLISKNLATD+KL LDMYGDYSV
Subjt:  ----------------------RGEVRKLHPKGILDIMDRARLVENKINVVALNSAKRIGRVKERCVVVKIVDWTHYNLISKNLATDMKLPLDMYGDYSV

Query:  VLGCCK--------------IGNDRYVEDFFPLQMGEDDEVILGNLWLVALGKMEVDWKDLPMKLKAGKEIVTLRKDPSL
        VLG  K              IGND YVEDFFPLQMGEDDEVILGNLWLVALGKMEVDWK+LPMKLK GKE VTLRKDP L
Subjt:  VLGCCK--------------IGNDRYVEDFFPLQMGEDDEVILGNLWLVALGKMEVDWKDLPMKLKAGKEIVTLRKDPSL

A0A5D3C860 Transposon Tf2-1 polyprotein isoform X11.5e-1524.47Show/hide
Query:  MFDGTDSLVWIFKMERYFEVHHMDDISRMMEIILLCMSGQALAWFQC------FRNWG-------------------------KPPESWDEFRPALYMLI
        +F G D   W+F+ ERYF++H + D  +M+ +  +   G AL W++       F +W                          K   + D++R     L+
Subjt:  MFDGTDSLVWIFKMERYFEVHHMDDISRMMEIILLCMSGQALAWFQC------FRNWG-------------------------KPPESWDEFRPALYMLI

Query:  WRQS---QRVLQFHCLAARGEYSRGEVRKLHPKGILDIMDRARLVENK---INVVALN------------------------------------------
           S     V++   +     + R EVR   PKG+ ++M+ A+LVEN+    N V LN                                          
Subjt:  WRQS---QRVLQFHCLAARGEYSRGEVRKLHPKGILDIMDRARLVENK---INVVALN------------------------------------------

Query:  -----SAKRIGRVKERCVVVKIVDWTHYNLISKNLATDMKLPLDMYGDYSVVLGC--------------CKIGNDRYVEDFFPLQMGEDDEVILGNLWLV
             + K  G+++ER V++ I     +N IS+ L   ++LP+   G Y V+LG                ++ N +  E+F PL++G  D V+LG  WL 
Subjt:  -----SAKRIGRVKERCVVVKIVDWTHYNLISKNLATDMKLPLDMYGDYSVVLGC--------------CKIGNDRYVEDFFPLQMGEDDEVILGNLWLV

Query:  ALGKMEVDWKDLPMKLKAGKEIVTLRKDPSL
        +LG   VDWK+L +   +  + ++++ DPSL
Subjt:  ALGKMEVDWKDLPMKLKAGKEIVTLRKDPSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCGATGGAACCGATTCCCTCGTGTGGATCTTCAAAATGGAACGCTACTTTGAAGTTCACCACATGGACGACATTTCCAGGATGATGGAGATTATCCTTCTCTGTAT
GTCTGGCCAAGCCCTAGCGTGGTTCCAATGCTTTCGAAACTGGGGAAAACCGCCGGAATCGTGGGATGAGTTTCGTCCTGCTTTGTATATGCTGATTTGGAGACAGTCAC
AGCGTGTGTTACAGTTTCATTGCCTTGCAGCAAGAGGGGAGTATTCGAGAGGGGAGGTTCGGAAGTTACATCCAAAAGGTATTCTGGACATTATGGATAGAGCGAGGTTG
GTGGAAAATAAGATCAACGTCGTTGCTCTGAACTCAGCCAAGCGTATAGGCAGGGTCAAGGAGAGGTGTGTGGTCGTTAAGATCGTCGATTGGACTCATTATAACTTAAT
CTCTAAAAACTTAGCTACGGACATGAAGCTTCCATTGGACATGTACGGAGACTACAGTGTGGTTTTGGGTTGCTGCAAAATCGGGAATGACAGGTATGTGGAGGACTTCT
TTCCCCTTCAAATGGGAGAAGATGATGAGGTGATATTGGGAAATCTGTGGCTGGTGGCCCTAGGGAAGATGGAAGTTGATTGGAAAGATCTGCCTATGAAGCTGAAGGCG
GGGAAGGAGATTGTAACTTTACGAAAAGATCCATCCCTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCGATGGAACCGATTCCCTCGTGTGGATCTTCAAAATGGAACGCTACTTTGAAGTTCACCACATGGACGACATTTCCAGGATGATGGAGATTATCCTTCTCTGTAT
GTCTGGCCAAGCCCTAGCGTGGTTCCAATGCTTTCGAAACTGGGGAAAACCGCCGGAATCGTGGGATGAGTTTCGTCCTGCTTTGTATATGCTGATTTGGAGACAGTCAC
AGCGTGTGTTACAGTTTCATTGCCTTGCAGCAAGAGGGGAGTATTCGAGAGGGGAGGTTCGGAAGTTACATCCAAAAGGTATTCTGGACATTATGGATAGAGCGAGGTTG
GTGGAAAATAAGATCAACGTCGTTGCTCTGAACTCAGCCAAGCGTATAGGCAGGGTCAAGGAGAGGTGTGTGGTCGTTAAGATCGTCGATTGGACTCATTATAACTTAAT
CTCTAAAAACTTAGCTACGGACATGAAGCTTCCATTGGACATGTACGGAGACTACAGTGTGGTTTTGGGTTGCTGCAAAATCGGGAATGACAGGTATGTGGAGGACTTCT
TTCCCCTTCAAATGGGAGAAGATGATGAGGTGATATTGGGAAATCTGTGGCTGGTGGCCCTAGGGAAGATGGAAGTTGATTGGAAAGATCTGCCTATGAAGCTGAAGGCG
GGGAAGGAGATTGTAACTTTACGAAAAGATCCATCCCTCTGA
Protein sequenceShow/hide protein sequence
MFDGTDSLVWIFKMERYFEVHHMDDISRMMEIILLCMSGQALAWFQCFRNWGKPPESWDEFRPALYMLIWRQSQRVLQFHCLAARGEYSRGEVRKLHPKGILDIMDRARL
VENKINVVALNSAKRIGRVKERCVVVKIVDWTHYNLISKNLATDMKLPLDMYGDYSVVLGCCKIGNDRYVEDFFPLQMGEDDEVILGNLWLVALGKMEVDWKDLPMKLKA
GKEIVTLRKDPSL