; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC04G067060 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC04G067060
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionElongation factor Tu
Genome locationCiama_Chr04:1084540..1094734
RNA-Seq ExpressionCaUC04G067060
SyntenyCaUC04G067060
Gene Ontology termsGO:0006414 - translational elongation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003746 - translation elongation factor activity (molecular function)
GO:0003924 - GTPase activity (molecular function)
GO:0005525 - GTP binding (molecular function)
InterPro domainsIPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589415.1 Elongation factor Tu, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.6e-1236.63Show/hide
Query:  SKLVFPHPSPSPSPSPSPSL-------CSKLSFCFLNPSSIRPLSVSSPSVNRPRSFTIR----------------------------------------
        S L+F H S SPS SPS SL         KLS  FLNPSSIRPL+ SSP+VN PRS TIR                                        
Subjt:  SKLVFPHPSPSPSPSPSPSL-------CSKLSFCFLNPSSIRPLSVSSPSVNRPRSFTIR----------------------------------------

Query:  ------------------------EEETP------------CQYCHNWACRSTMLK-----------PLLRTKEHILLAKQVGVPNMVVFLNKKDQVDDE
                                E ET               Y  N    +  +            P+ +TKEHILLAKQVGVPNMVVFLNKKDQVDDE
Subjt:  ------------------------EEETP------------CQYCHNWACRSTMLK-----------PLLRTKEHILLAKQVGVPNMVVFLNKKDQVDDE

Query:  EL
        EL
Subjt:  EL

KAG7023093.1 Elongation factor Tu, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]3.6e-1237.25Show/hide
Query:  SKLVFPHPSPSPSPSPS-----PSLCS----KLSFCFLNPSSIRPLSVSSPSVNRPRSFTIR--------------------------------------
        S LVF H S SPS SPS     PS  S    KLS  FLNPSSIRPL+ SSP+VN PRS TIR                                      
Subjt:  SKLVFPHPSPSPSPSPS-----PSLCS----KLSFCFLNPSSIRPLSVSSPSVNRPRSFTIR--------------------------------------

Query:  --------------------------EEETP------------CQYCHNWACRSTMLK-----------PLLRTKEHILLAKQVGVPNMVVFLNKKDQVD
                                  E ET               Y  N    +  +            P+ +TKEHILLAKQVGVPNMVVFLNKKDQVD
Subjt:  --------------------------EEETP------------CQYCHNWACRSTMLK-----------PLLRTKEHILLAKQVGVPNMVVFLNKKDQVD

Query:  DEEL
        DEEL
Subjt:  DEEL

XP_008464512.1 PREDICTED: elongation factor Tu, chloroplastic [Cucumis melo]1.6e-1538.54Show/hide
Query:  SKLVFPHPSPSPSPSPSPSL----------CSKLSFCFLNPSSIRPLSVSSPSVNRPRSFTIR-------------------------------------
        SKLVFPHPS SPSPSPS S            S LS  FLN SSIRP S SSPSVNRPRS TIR                                     
Subjt:  SKLVFPHPSPSPSPSPSPSL----------CSKLSFCFLNPSSIRPLSVSSPSVNRPRSFTIR-------------------------------------

Query:  ---------------------------EEETP------------CQYCHNWACRSTMLK-----------PLLRTKEHILLAKQVGVPNMVVFLNKKDQV
                                   E ET               Y  N    +  +            P+ +TKEHILLAKQVGVPNMVVFLNKKDQV
Subjt:  ---------------------------EEETP------------CQYCHNWACRSTMLK-----------PLLRTKEHILLAKQVGVPNMVVFLNKKDQV

Query:  DDEEL
        DDEEL
Subjt:  DDEEL

XP_022135255.1 elongation factor Tu, chloroplastic [Momordica charantia]5.6e-1337.44Show/hide
Query:  SKLVFPHPSPSPSPSPS-----PSLCSKLSFCFLNPSSIRPLSVSSPS---VNRPRSFTIR---------------------------------------
        +KLVFPH SPSPS  P+     PS   KLS  FLNPSSIRPL+ SS S   V RPRSFTIR                                       
Subjt:  SKLVFPHPSPSPSPSPS-----PSLCSKLSFCFLNPSSIRPLSVSSPS---VNRPRSFTIR---------------------------------------

Query:  -------------------------EEETP------------CQYCHNWACRSTMLK-----------PLLRTKEHILLAKQVGVPNMVVFLNKKDQVDD
                                 E ET               Y  N    +  +            P+ +TKEHILLAKQVGVPNMVVFLNKKDQVDD
Subjt:  -------------------------EEETP------------CQYCHNWACRSTMLK-----------PLLRTKEHILLAKQVGVPNMVVFLNKKDQVDD

Query:  EEL
        EEL
Subjt:  EEL

XP_038879216.1 elongation factor Tu, chloroplastic [Benincasa hispida]1.6e-1539Show/hide
Query:  SKLVFPHPSPSPSPSPS-----PSLCSKLSFCFLNPSSIRPLSVSSPSVNRPRSFTIR------------------------------------------
        SKL+FPHPS S S S S     PS   KLS  FLNPSSIRPLS SSPS+NRPRSFTIR                                          
Subjt:  SKLVFPHPSPSPSPSPS-----PSLCSKLSFCFLNPSSIRPLSVSSPSVNRPRSFTIR------------------------------------------

Query:  ----------------------EEETP------------CQYCHNWACRSTMLK-----------PLLRTKEHILLAKQVGVPNMVVFLNKKDQVDDEEL
                              E ET               Y  N    +  +            P+ +TKEHILLAKQVGVPNMVVFLNKKDQVDDEEL
Subjt:  ----------------------EEETP------------CQYCHNWACRSTMLK-----------PLLRTKEHILLAKQVGVPNMVVFLNKKDQVDDEEL

TrEMBL top hitse value%identityAlignment
A0A0A0LRZ6 Elongation factor Tu1.1e-1957.14Show/hide
Query:  SKLVFPHP---SPSPSPSPSPSL---------CSKLSFCFLNPSSIRPLSVSSPSVNRPRSFTIR------EEETP-------CQYCHNWACRSTMLKPL
        SKLVFPHP   S SPS S S S           S LS  FLN SSIRPLS SSPSV+RPRS TIR      E + P           H     S    P+
Subjt:  SKLVFPHP---SPSPSPSPSPSL---------CSKLSFCFLNPSSIRPLSVSSPSVNRPRSFTIR------EEETP-------CQYCHNWACRSTMLKPL

Query:  LRTKEHILLAKQVGVPNMVVFLNKKDQVDDEEL
         +TKEHILLAKQVGVPNMVVFLNKKDQVDDEEL
Subjt:  LRTKEHILLAKQVGVPNMVVFLNKKDQVDDEEL

A0A1S3CLM5 Elongation factor Tu7.6e-1638.54Show/hide
Query:  SKLVFPHPSPSPSPSPSPSL----------CSKLSFCFLNPSSIRPLSVSSPSVNRPRSFTIR-------------------------------------
        SKLVFPHPS SPSPSPS S            S LS  FLN SSIRP S SSPSVNRPRS TIR                                     
Subjt:  SKLVFPHPSPSPSPSPSPSL----------CSKLSFCFLNPSSIRPLSVSSPSVNRPRSFTIR-------------------------------------

Query:  ---------------------------EEETP------------CQYCHNWACRSTMLK-----------PLLRTKEHILLAKQVGVPNMVVFLNKKDQV
                                   E ET               Y  N    +  +            P+ +TKEHILLAKQVGVPNMVVFLNKKDQV
Subjt:  ---------------------------EEETP------------CQYCHNWACRSTMLK-----------PLLRTKEHILLAKQVGVPNMVVFLNKKDQV

Query:  DDEEL
        DDEEL
Subjt:  DDEEL

A0A5A7URR7 Elongation factor Tu7.6e-1638.54Show/hide
Query:  SKLVFPHPSPSPSPSPSPSL----------CSKLSFCFLNPSSIRPLSVSSPSVNRPRSFTIR-------------------------------------
        SKLVFPHPS SPSPSPS S            S LS  FLN SSIRP S SSPSVNRPRS TIR                                     
Subjt:  SKLVFPHPSPSPSPSPSPSL----------CSKLSFCFLNPSSIRPLSVSSPSVNRPRSFTIR-------------------------------------

Query:  ---------------------------EEETP------------CQYCHNWACRSTMLK-----------PLLRTKEHILLAKQVGVPNMVVFLNKKDQV
                                   E ET               Y  N    +  +            P+ +TKEHILLAKQVGVPNMVVFLNKKDQV
Subjt:  ---------------------------EEETP------------CQYCHNWACRSTMLK-----------PLLRTKEHILLAKQVGVPNMVVFLNKKDQV

Query:  DDEEL
        DDEEL
Subjt:  DDEEL

A0A6J1C0N2 Elongation factor Tu2.7e-1337.44Show/hide
Query:  SKLVFPHPSPSPSPSPS-----PSLCSKLSFCFLNPSSIRPLSVSSPS---VNRPRSFTIR---------------------------------------
        +KLVFPH SPSPS  P+     PS   KLS  FLNPSSIRPL+ SS S   V RPRSFTIR                                       
Subjt:  SKLVFPHPSPSPSPSPS-----PSLCSKLSFCFLNPSSIRPLSVSSPS---VNRPRSFTIR---------------------------------------

Query:  -------------------------EEETP------------CQYCHNWACRSTMLK-----------PLLRTKEHILLAKQVGVPNMVVFLNKKDQVDD
                                 E ET               Y  N    +  +            P+ +TKEHILLAKQVGVPNMVVFLNKKDQVDD
Subjt:  -------------------------EEETP------------CQYCHNWACRSTMLK-----------PLLRTKEHILLAKQVGVPNMVVFLNKKDQVDD

Query:  EEL
        EEL
Subjt:  EEL

A0A6J1KWG0 Elongation factor Tu1.8e-1236.23Show/hide
Query:  LLQGSQKGFSKLVFPHPSPSPSPSPSPSLCSKLSFCFLNPSSIRPL---SVSSPSVNRPRSFTIR-----------------------------------
        L   S    SKL FPHPSPSP  S  PS  +KLS  FLNPSS+RPL   S SS +V R  SFTIR                                   
Subjt:  LLQGSQKGFSKLVFPHPSPSPSPSPSPSLCSKLSFCFLNPSSIRPL---SVSSPSVNRPRSFTIR-----------------------------------

Query:  -----------------------------EEETP------------CQYCHNWACRSTMLK-----------PLLRTKEHILLAKQVGVPNMVVFLNKKD
                                     E ET               Y  N    +  +            P+ +TKEHILLAKQVGVPNMVVFLNKKD
Subjt:  -----------------------------EEETP------------CQYCHNWACRSTMLK-----------PLLRTKEHILLAKQVGVPNMVVFLNKKD

Query:  QVDDEEL
        QVDDEEL
Subjt:  QVDDEEL

SwissProt top hitse value%identityAlignment
P46280 Elongation factor Tu, chloroplastic1.3e-0985.71Show/hide
Query:  PLLRTKEHILLAKQVGVPNMVVFLNKKDQVDDEEL
        P+ +TKEHILLAKQVGVPN+VVFLNK+DQVDDEEL
Subjt:  PLLRTKEHILLAKQVGVPNMVVFLNKKDQVDDEEL

P68158 Elongation factor Tu, chloroplastic4.6e-1088.57Show/hide
Query:  PLLRTKEHILLAKQVGVPNMVVFLNKKDQVDDEEL
        P+ +TKEHILLAKQVGVPNMVVFLNK+DQVDDEEL
Subjt:  PLLRTKEHILLAKQVGVPNMVVFLNKKDQVDDEEL

Q40450 Elongation factor TuA, chloroplastic4.6e-1088.57Show/hide
Query:  PLLRTKEHILLAKQVGVPNMVVFLNKKDQVDDEEL
        P+ +TKEHILLAKQVGVPNMVVFLNK+DQVDDEEL
Subjt:  PLLRTKEHILLAKQVGVPNMVVFLNKKDQVDDEEL

Q43364 Elongation factor TuB, chloroplastic4.6e-1088.57Show/hide
Query:  PLLRTKEHILLAKQVGVPNMVVFLNKKDQVDDEEL
        P+ +TKEHILLAKQVGVPNMVVFLNK+DQVDDEEL
Subjt:  PLLRTKEHILLAKQVGVPNMVVFLNKKDQVDDEEL

Q43467 Elongation factor Tu, chloroplastic7.9e-1085.71Show/hide
Query:  PLLRTKEHILLAKQVGVPNMVVFLNKKDQVDDEEL
        P+ +TKEHI+LAKQVGVPNMVVFLNK+DQVDDEEL
Subjt:  PLLRTKEHILLAKQVGVPNMVVFLNKKDQVDDEEL

Arabidopsis top hitse value%identityAlignment
AT4G02930.1 GTP binding Elongation factor Tu family protein1.7e-0771.43Show/hide
Query:  PLLRTKEHILLAKQVGVPNMVVFLNKKDQVDDEEL
        P+ +TKEHILLA+QVGVP++V FLNK D VDD EL
Subjt:  PLLRTKEHILLAKQVGVPNMVVFLNKKDQVDDEEL

AT4G20360.1 RAB GTPase homolog E1B6.2e-1082.86Show/hide
Query:  PLLRTKEHILLAKQVGVPNMVVFLNKKDQVDDEEL
        P+ +TKEHILLAKQVGVP+MVVFLNK+DQVDD EL
Subjt:  PLLRTKEHILLAKQVGVPNMVVFLNKKDQVDDEEL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAAAAAAAATTACGTCCGACTCCGACCGTCACCTCTTCCTCCTGCAAGGCAGCCAAAAGGGTTTCTCTAAGCTCGTCTTCCCTCACCCTTCTCCTTCTCCT
TCTCCTTCTCCTTCTCCTTCCCTCTGCTCCAAGCTTTCTTTCTGTTTCTTGAACCCTTCTTCTATTCGCCCTCTCTCTGTTTCCTCCCCCTCTGTAAACCGTCCT
CGTTCCTTCACAATTCGAGAGGAAGAAACCCCATGTCAATATTGCCACAATTGGGCATGTCGATCGACCATGCTAAAACCACTCTTACGGACGAAGGAACATATT
TTGTTAGCTAAGCAAGTGGGTGTTCCCAATATGGTGGTGTTTCTCAATAAGAAGGATCAAGTTGATGATGAGGAGCTTCAGCATGCAATAACTAGACTAGGAGAA
CGCAACTATGCTTTTAAGCTTCGAAGCATGATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATAAAAAAAATTACGTCCGACTCCGACCGTCACCTCTTCCTCCTGCAAGGCAGCCAAAAGGGTTTCTCTAAGCTCGTCTTCCCTCACCCTTCTCCTTCTCCT
TCTCCTTCTCCTTCTCCTTCCCTCTGCTCCAAGCTTTCTTTCTGTTTCTTGAACCCTTCTTCTATTCGCCCTCTCTCTGTTTCCTCCCCCTCTGTAAACCGTCCT
CGTTCCTTCACAATTCGAGAGGAAGAAACCCCATGTCAATATTGCCACAATTGGGCATGTCGATCGACCATGCTAAAACCACTCTTACGGACGAAGGAACATATT
TTGTTAGCTAAGCAAGTGGGTGTTCCCAATATGGTGGTGTTTCTCAATAAGAAGGATCAAGTTGATGATGAGGAGCTTCAGCATGCAATAACTAGACTAGGAGAA
CGCAACTATGCTTTTAAGCTTCGAAGCATGATTTAA
Protein sequenceShow/hide protein sequence
MIKKITSDSDRHLFLLQGSQKGFSKLVFPHPSPSPSPSPSPSLCSKLSFCFLNPSSIRPLSVSSPSVNRPRSFTIREEETPCQYCHNWACRSTMLKPLLRTKEHI
LLAKQVGVPNMVVFLNKKDQVDDEELQHAITRLGERNYAFKLRSMI