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CaUC04G067560 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC04G067560
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionRibosomal protein
Genome locationCiama_Chr04:2663940..2664318
RNA-Seq ExpressionCaUC04G067560
SyntenyCaUC04G067560
Gene Ontology termsGO:0009507 - chloroplast (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAO37051.1 ribosomal protein [Clostridium tetani E88]1.1e-0963.93Show/hide
Query:  LPGLTTATQYSGDPFPEPIRVSVGLSVTGLSGNIRTHIFPPRRAFRVIALRPASICLDVIQ
        LPGLTTATQYSG P PEPIRVS G  VTGLSG I    FPP   +  IA+   SI L VIQ
Subjt:  LPGLTTATQYSGDPFPEPIRVSVGLSVTGLSGNIRTHIFPPRRAFRVIALRPASICLDVIQ

AEQ94251.1 hypothetical protein [Eutreptia viridis]2.6e-0666.67Show/hide
Query:  ILPGLTTATQYSGDPFPEPIRVSVGLSVTGLSGNIRTHIFPPRRA
        ILPGL TATQYS  P P+PIRVS    V GLSG  R   FPPRRA
Subjt:  ILPGLTTATQYSGDPFPEPIRVSVGLSVTGLSGNIRTHIFPPRRA

EAQ68550.1 ribosomal protein [Synechococcus sp. RS9917]1.9e-0963.33Show/hide
Query:  PGLTTATQYSGDPFPEPIRVSVGLSVTGLSGNIRTHIFPPRRAFRVIALRPASICLDVIQ
        PGL TATQ SG P PEP+RVS G  V GLSG IR  I PPR  +RV+A R ASI  +VIQ
Subjt:  PGLTTATQYSGDPFPEPIRVSVGLSVTGLSGNIRTHIFPPRRAFRVIALRPASICLDVIQ

KAG5571990.1 hypothetical protein H5410_061756 [Solanum commersonii]2.3e-2392.06Show/hide
Query:  ILPGLTTATQYSGDPFPEPIRVSVGLSVTGLSGNIRTHIFPPRRAFRVIALRPASICLDVIQA
        I PGLTTATQYSGDPFPEPIRVS GLSVTGLSGNI THIFPPRRAFRVIA RPASIC DVIQA
Subjt:  ILPGLTTATQYSGDPFPEPIRVSVGLSVTGLSGNIRTHIFPPRRAFRVIALRPASICLDVIQA

NP_817230.1 ORF40k [Pinus koraiensis]1.3e-1089.74Show/hide
Query:  TATQYSGDPFPEPIRVSVGLSVTGLSGNIRTHIFPPRRA
        T TQYSGDPFPEPIRVS GL V GLSGNIRTHIFPPRRA
Subjt:  TATQYSGDPFPEPIRVSVGLSVTGLSGNIRTHIFPPRRA

TrEMBL top hitse value%identityAlignment
A0A450US28 Uncharacterized protein1.1e-0559.26Show/hide
Query:  PGLTTATQYSGDPFPEPIRVSVGLSVTGLSGNIRTHIFPPRRAFRVIALRPASI
        PG T  TQYS  PFP P R S G  VTGLSG  R HIF PR    V A R ASI
Subjt:  PGLTTATQYSGDPFPEPIRVSVGLSVTGLSGNIRTHIFPPRRAFRVIALRPASI

A3Z8W6 Ribosomal protein9.3e-1063.33Show/hide
Query:  PGLTTATQYSGDPFPEPIRVSVGLSVTGLSGNIRTHIFPPRRAFRVIALRPASICLDVIQ
        PGL TATQ SG P PEP+RVS G  V GLSG IR  I PPR  +RV+A R ASI  +VIQ
Subjt:  PGLTTATQYSGDPFPEPIRVSVGLSVTGLSGNIRTHIFPPRRAFRVIALRPASICLDVIQ

H8ZXD3 Uncharacterized protein1.3e-0666.67Show/hide
Query:  ILPGLTTATQYSGDPFPEPIRVSVGLSVTGLSGNIRTHIFPPRRA
        ILPGL TATQYS  P P+PIRVS    V GLSG  R   FPPRRA
Subjt:  ILPGLTTATQYSGDPFPEPIRVSVGLSVTGLSGNIRTHIFPPRRA

Q85WZ2 ORF40k6.4e-1189.74Show/hide
Query:  TATQYSGDPFPEPIRVSVGLSVTGLSGNIRTHIFPPRRA
        T TQYSGDPFPEPIRVS GL V GLSGNIRTHIFPPRRA
Subjt:  TATQYSGDPFPEPIRVSVGLSVTGLSGNIRTHIFPPRRA

Q890P4 Ribosomal protein5.4e-1063.93Show/hide
Query:  LPGLTTATQYSGDPFPEPIRVSVGLSVTGLSGNIRTHIFPPRRAFRVIALRPASICLDVIQ
        LPGLTTATQYSG P PEPIRVS G  VTGLSG I    FPP   +  IA+   SI L VIQ
Subjt:  LPGLTTATQYSGDPFPEPIRVSVGLSVTGLSGNIRTHIFPPRRAFRVIALRPASICLDVIQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTCTACCTGGTTTAACAACAGCTACCCAATATTCGGGGGATCCTTTCCCTGAACCCATACGTGTTTCTGTGGGTCTTAGTGTAACGGGTTTGTCTGGAAATATACGTAC
CCATATTTTTCCGCCGCGTCGTGCATTTCGTGTCATTGCCCTTCGTCCCGCTTCGATTTGTCTAGATGTGATCCAAGCGGAACCGGACATGAGAGTTTCTTCTCATCCAG
CTCCTCGCGAA
mRNA sequenceShow/hide mRNA sequence
ATTCTACCTGGTTTAACAACAGCTACCCAATATTCGGGGGATCCTTTCCCTGAACCCATACGTGTTTCTGTGGGTCTTAGTGTAACGGGTTTGTCTGGAAATATACGTAC
CCATATTTTTCCGCCGCGTCGTGCATTTCGTGTCATTGCCCTTCGTCCCGCTTCGATTTGTCTAGATGTGATCCAAGCGGAACCGGACATGAGAGTTTCTTCTCATCCAG
CTCCTCGCGAA
Protein sequenceShow/hide protein sequence
ILPGLTTATQYSGDPFPEPIRVSVGLSVTGLSGNIRTHIFPPRRAFRVIALRPASICLDVIQAEPDMRVSSHPAPRE