; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC04G069090 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC04G069090
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionReverse transcriptase
Genome locationCiama_Chr04:9627881..9628665
RNA-Seq ExpressionCaUC04G069090
SyntenyCaUC04G069090
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003824 - catalytic activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]7.4e-4040.73Show/hide
Query:  GANICYNCGHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQETGTGDASGAGRQRG---------------QQEAEKTPNVVTGTMTICSKTTYVLIDLG
        GA +CY CG   HFKRDCPQLR     +QG  S  V Q +  T  G+ +   RQ+G               QQEAE  P+V+T T+ IC+  T VL+D G
Subjt:  GANICYNCGHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQETGTGDASGAGRQRG---------------QQEAEKTPNVVTGTMTICSKTTYVLIDLG

Query:  ATRLFVSRAFAMHVNKRLEPWLDALLVHTSV--------------------------------------GMDFLAKYHATIDYFKKEVRFEKPGEAEVVF
        AT  FVS  F   +N+ LEP  + L++ T V                                      GMDFL  ++A+++  +KEV F+KPG  EV+F
Subjt:  ATRLFVSRAFAMHVNKRLEPWLDALLVHTSV--------------------------------------GMDFLAKYHATIDYFKKEVRFEKPGEAEVVF

Query:  QGKRKILPTCVISAVKARKMLSKGCEAYLAHVIKVKLEKLRPEDVPDV
        +G+R I+PT +ISA+KA K+L KGC A+LAHV++V+ EKL+PEDVP V
Subjt:  QGKRKILPTCVISAVKARKMLSKGCEAYLAHVIKVKLEKLRPEDVPDV

KAA0041696.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.3e-3942.67Show/hide
Query:  GANICYNCGHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQETGTGDASGAGRQRG---------------QQEAEKTPNVVTGTMTICSKTTYVLIDLG
        GA +CY CG P HFK+DCPQL    + +QG  SQ V Q +      + +   RQ+G               QQEAE  P+V+ GT+ IC+    VL DLG
Subjt:  GANICYNCGHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQETGTGDASGAGRQRG---------------QQEAEKTPNVVTGTMTICSKTTYVLIDLG

Query:  ATRLFVSRAFAMHVNKRLEPWLDALLVHTSV--------------GMDFLAKYHATIDYFKKEVRFEKPGEAEVVFQGKRKILPTCVISAVKARKMLSKG
        AT  FVS  F   +N+ LEP  + L  +T V              GMDFL  ++A++D  +KEV F KPG  EVVF+G +K++   +IS +KA K+L KG
Subjt:  ATRLFVSRAFAMHVNKRLEPWLDALLVHTSV--------------GMDFLAKYHATIDYFKKEVRFEKPGEAEVVFQGKRKILPTCVISAVKARKMLSKG

Query:  CEAYLAHVIKVKLEKLRPEDVPDVK
        C  +LAH++ V+ EKL+PEDVP VK
Subjt:  CEAYLAHVIKVKLEKLRPEDVPDVK

KAA0060066.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.0e-3741.77Show/hide
Query:  GANICYNCGHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQET----GTGDAS-----GAGRQRG------QQEAEKTPNVVTGTMTICSKTTYVLIDLG
        GA +CY CG P HFK+DCPQL    + +QG  SQ V Q +       GT  A      G  RQ+G      QQEAE  P+V+TGT+ IC+    VL DLG
Subjt:  GANICYNCGHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQET----GTGDAS-----GAGRQRG------QQEAEKTPNVVTGTMTICSKTTYVLIDLG

Query:  ATRLFVSRAFAMHVNKRLEPWLDALLVHTSV--------------------------------------GMDFLAKYHATIDYFKKEVRFEKPGEAEVVF
        AT  FVS  F   +N+ LEP  + L ++T V                                      GMDFL  ++A++D  +KEV F KPG AEVVF
Subjt:  ATRLFVSRAFAMHVNKRLEPWLDALLVHTSV--------------------------------------GMDFLAKYHATIDYFKKEVRFEKPGEAEVVF

Query:  QGKRKILPTCVISAVKARKMLSKGCEAYLAHVIKVKLEKLRPEDVPDVK
        +G RK +   +IS +KA K+L KGC A+LAH++ V+ EKL+PEDVP VK
Subjt:  QGKRKILPTCVISAVKARKMLSKGCEAYLAHVIKVKLEKLRPEDVPDVK

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]7.4e-4040.73Show/hide
Query:  GANICYNCGHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQETGTGDASGAGRQRG---------------QQEAEKTPNVVTGTMTICSKTTYVLIDLG
        GA +CY CG   HFKRDCPQLR     +QG  S  V Q +  T  G+ +   RQ+G               QQEAE  P+V+T T+ IC+  T VL+D G
Subjt:  GANICYNCGHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQETGTGDASGAGRQRG---------------QQEAEKTPNVVTGTMTICSKTTYVLIDLG

Query:  ATRLFVSRAFAMHVNKRLEPWLDALLVHTSV--------------------------------------GMDFLAKYHATIDYFKKEVRFEKPGEAEVVF
        AT  FVS  F   +N+ LEP  + L++ T V                                      GMDFL  ++A+++  +KEV F+KPG  EV+F
Subjt:  ATRLFVSRAFAMHVNKRLEPWLDALLVHTSV--------------------------------------GMDFLAKYHATIDYFKKEVRFEKPGEAEVVF

Query:  QGKRKILPTCVISAVKARKMLSKGCEAYLAHVIKVKLEKLRPEDVPDV
        +G+R I+PT +ISA+KA K+L KGC A+LAHV++V+ EKL+PEDVP V
Subjt:  QGKRKILPTCVISAVKARKMLSKGCEAYLAHVIKVKLEKLRPEDVPDV

TYK06319.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.3e-3942.67Show/hide
Query:  GANICYNCGHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQETGTGDASGAGRQRG---------------QQEAEKTPNVVTGTMTICSKTTYVLIDLG
        GA +CY CG P HFK+DCPQL    + +QG  SQ V Q +      + +   RQ+G               QQEAE  P+V+ GT+ IC+    VL DLG
Subjt:  GANICYNCGHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQETGTGDASGAGRQRG---------------QQEAEKTPNVVTGTMTICSKTTYVLIDLG

Query:  ATRLFVSRAFAMHVNKRLEPWLDALLVHTSV--------------GMDFLAKYHATIDYFKKEVRFEKPGEAEVVFQGKRKILPTCVISAVKARKMLSKG
        AT  FVS  F   +N+ LEP  + L ++T V              GMDFL  ++A++D  +KEV F KPG  EVVF+G +K++   +IS +KA K+L KG
Subjt:  ATRLFVSRAFAMHVNKRLEPWLDALLVHTSV--------------GMDFLAKYHATIDYFKKEVRFEKPGEAEVVFQGKRKILPTCVISAVKARKMLSKG

Query:  CEAYLAHVIKVKLEKLRPEDVPDVK
        C  +LAH++ V+ EKL+PEDVP VK
Subjt:  CEAYLAHVIKVKLEKLRPEDVPDVK

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase3.6e-4040.73Show/hide
Query:  GANICYNCGHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQETGTGDASGAGRQRG---------------QQEAEKTPNVVTGTMTICSKTTYVLIDLG
        GA +CY CG   HFKRDCPQLR     +QG  S  V Q +  T  G+ +   RQ+G               QQEAE  P+V+T T+ IC+  T VL+D G
Subjt:  GANICYNCGHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQETGTGDASGAGRQRG---------------QQEAEKTPNVVTGTMTICSKTTYVLIDLG

Query:  ATRLFVSRAFAMHVNKRLEPWLDALLVHTSV--------------------------------------GMDFLAKYHATIDYFKKEVRFEKPGEAEVVF
        AT  FVS  F   +N+ LEP  + L++ T V                                      GMDFL  ++A+++  +KEV F+KPG  EV+F
Subjt:  ATRLFVSRAFAMHVNKRLEPWLDALLVHTSV--------------------------------------GMDFLAKYHATIDYFKKEVRFEKPGEAEVVF

Query:  QGKRKILPTCVISAVKARKMLSKGCEAYLAHVIKVKLEKLRPEDVPDV
        +G+R I+PT +ISA+KA K+L KGC A+LAHV++V+ EKL+PEDVP V
Subjt:  QGKRKILPTCVISAVKARKMLSKGCEAYLAHVIKVKLEKLRPEDVPDV

A0A5A7TI15 Reverse transcriptase3.0e-3942.67Show/hide
Query:  GANICYNCGHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQETGTGDASGAGRQRG---------------QQEAEKTPNVVTGTMTICSKTTYVLIDLG
        GA +CY CG P HFK+DCPQL    + +QG  SQ V Q +      + +   RQ+G               QQEAE  P+V+ GT+ IC+    VL DLG
Subjt:  GANICYNCGHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQETGTGDASGAGRQRG---------------QQEAEKTPNVVTGTMTICSKTTYVLIDLG

Query:  ATRLFVSRAFAMHVNKRLEPWLDALLVHTSV--------------GMDFLAKYHATIDYFKKEVRFEKPGEAEVVFQGKRKILPTCVISAVKARKMLSKG
        AT  FVS  F   +N+ LEP  + L  +T V              GMDFL  ++A++D  +KEV F KPG  EVVF+G +K++   +IS +KA K+L KG
Subjt:  ATRLFVSRAFAMHVNKRLEPWLDALLVHTSV--------------GMDFLAKYHATIDYFKKEVRFEKPGEAEVVFQGKRKILPTCVISAVKARKMLSKG

Query:  CEAYLAHVIKVKLEKLRPEDVPDVK
        C  +LAH++ V+ EKL+PEDVP VK
Subjt:  CEAYLAHVIKVKLEKLRPEDVPDVK

A0A5A7V0R0 Reverse transcriptase9.8e-3841.77Show/hide
Query:  GANICYNCGHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQET----GTGDAS-----GAGRQRG------QQEAEKTPNVVTGTMTICSKTTYVLIDLG
        GA +CY CG P HFK+DCPQL    + +QG  SQ V Q +       GT  A      G  RQ+G      QQEAE  P+V+TGT+ IC+    VL DLG
Subjt:  GANICYNCGHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQET----GTGDAS-----GAGRQRG------QQEAEKTPNVVTGTMTICSKTTYVLIDLG

Query:  ATRLFVSRAFAMHVNKRLEPWLDALLVHTSV--------------------------------------GMDFLAKYHATIDYFKKEVRFEKPGEAEVVF
        AT  FVS  F   +N+ LEP  + L ++T V                                      GMDFL  ++A++D  +KEV F KPG AEVVF
Subjt:  ATRLFVSRAFAMHVNKRLEPWLDALLVHTSV--------------------------------------GMDFLAKYHATIDYFKKEVRFEKPGEAEVVF

Query:  QGKRKILPTCVISAVKARKMLSKGCEAYLAHVIKVKLEKLRPEDVPDVK
        +G RK +   +IS +KA K+L KGC A+LAH++ V+ EKL+PEDVP VK
Subjt:  QGKRKILPTCVISAVKARKMLSKGCEAYLAHVIKVKLEKLRPEDVPDVK

A0A5D3BTP3 Reverse transcriptase3.6e-4040.73Show/hide
Query:  GANICYNCGHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQETGTGDASGAGRQRG---------------QQEAEKTPNVVTGTMTICSKTTYVLIDLG
        GA +CY CG   HFKRDCPQLR     +QG  S  V Q +  T  G+ +   RQ+G               QQEAE  P+V+T T+ IC+  T VL+D G
Subjt:  GANICYNCGHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQETGTGDASGAGRQRG---------------QQEAEKTPNVVTGTMTICSKTTYVLIDLG

Query:  ATRLFVSRAFAMHVNKRLEPWLDALLVHTSV--------------------------------------GMDFLAKYHATIDYFKKEVRFEKPGEAEVVF
        AT  FVS  F   +N+ LEP  + L++ T V                                      GMDFL  ++A+++  +KEV F+KPG  EV+F
Subjt:  ATRLFVSRAFAMHVNKRLEPWLDALLVHTSV--------------------------------------GMDFLAKYHATIDYFKKEVRFEKPGEAEVVF

Query:  QGKRKILPTCVISAVKARKMLSKGCEAYLAHVIKVKLEKLRPEDVPDV
        +G+R I+PT +ISA+KA K+L KGC A+LAHV++V+ EKL+PEDVP V
Subjt:  QGKRKILPTCVISAVKARKMLSKGCEAYLAHVIKVKLEKLRPEDVPDV

A0A5D3C7J1 Reverse transcriptase6.1e-4042.67Show/hide
Query:  GANICYNCGHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQETGTGDASGAGRQRG---------------QQEAEKTPNVVTGTMTICSKTTYVLIDLG
        GA +CY CG P HFK+DCPQL    + +QG  SQ V Q +      + +   RQ+G               QQEAE  P+V+ GT+ IC+    VL DLG
Subjt:  GANICYNCGHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQETGTGDASGAGRQRG---------------QQEAEKTPNVVTGTMTICSKTTYVLIDLG

Query:  ATRLFVSRAFAMHVNKRLEPWLDALLVHTSV--------------GMDFLAKYHATIDYFKKEVRFEKPGEAEVVFQGKRKILPTCVISAVKARKMLSKG
        AT  FVS  F   +N+ LEP  + L ++T V              GMDFL  ++A++D  +KEV F KPG  EVVF+G +K++   +IS +KA K+L KG
Subjt:  ATRLFVSRAFAMHVNKRLEPWLDALLVHTSV--------------GMDFLAKYHATIDYFKKEVRFEKPGEAEVVFQGKRKILPTCVISAVKARKMLSKG

Query:  CEAYLAHVIKVKLEKLRPEDVPDVK
        C  +LAH++ V+ EKL+PEDVP VK
Subjt:  CEAYLAHVIKVKLEKLRPEDVPDVK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGGAGCCAATATTTGTTACAATTGTGGACATCCATGTCATTTTAAGAGGGATTGCCCACAACTTAGGCCAAGAAATGAGGTTGAGCAAGGAACAGTATCCCAGAT
AGTAAACCAGCCAAAGCAAGAGACAGGAACTGGTGATGCCAGTGGTGCTGGGAGACAAAGGGGTCAACAGGAGGCTGAGAAGACTCCAAACGTGGTGACGGGTACGATGA
CTATTTGTTCTAAGACTACTTATGTGTTAATTGATCTTGGAGCTACACGTTTGTTTGTTTCTCGAGCTTTTGCTATGCATGTGAATAAGAGATTAGAACCATGGCTCGAT
GCTTTACTAGTACATACTTCTGTTGGCATGGACTTTCTGGCAAAGTATCATGCTACTATTGATTACTTTAAGAAGGAAGTGAGATTTGAGAAGCCAGGTGAGGCTGAGGT
GGTGTTTCAGGGGAAAAGAAAGATTCTTCCTACCTGTGTAATCTCTGCAGTAAAAGCTAGAAAGATGTTGAGTAAAGGTTGTGAAGCGTACCTAGCACATGTAATTAAGG
TGAAGCTAGAAAAGTTGAGACCTGAAGATGTGCCTGATGTGAAATTCTGCAAGTACACAAGTCAAGTTATAATATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGGAGCCAATATTTGTTACAATTGTGGACATCCATGTCATTTTAAGAGGGATTGCCCACAACTTAGGCCAAGAAATGAGGTTGAGCAAGGAACAGTATCCCAGAT
AGTAAACCAGCCAAAGCAAGAGACAGGAACTGGTGATGCCAGTGGTGCTGGGAGACAAAGGGGTCAACAGGAGGCTGAGAAGACTCCAAACGTGGTGACGGGTACGATGA
CTATTTGTTCTAAGACTACTTATGTGTTAATTGATCTTGGAGCTACACGTTTGTTTGTTTCTCGAGCTTTTGCTATGCATGTGAATAAGAGATTAGAACCATGGCTCGAT
GCTTTACTAGTACATACTTCTGTTGGCATGGACTTTCTGGCAAAGTATCATGCTACTATTGATTACTTTAAGAAGGAAGTGAGATTTGAGAAGCCAGGTGAGGCTGAGGT
GGTGTTTCAGGGGAAAAGAAAGATTCTTCCTACCTGTGTAATCTCTGCAGTAAAAGCTAGAAAGATGTTGAGTAAAGGTTGTGAAGCGTACCTAGCACATGTAATTAAGG
TGAAGCTAGAAAAGTTGAGACCTGAAGATGTGCCTGATGTGAAATTCTGCAAGTACACAAGTCAAGTTATAATATAA
Protein sequenceShow/hide protein sequence
MSGANICYNCGHPCHFKRDCPQLRPRNEVEQGTVSQIVNQPKQETGTGDASGAGRQRGQQEAEKTPNVVTGTMTICSKTTYVLIDLGATRLFVSRAFAMHVNKRLEPWLD
ALLVHTSVGMDFLAKYHATIDYFKKEVRFEKPGEAEVVFQGKRKILPTCVISAVKARKMLSKGCEAYLAHVIKVKLEKLRPEDVPDVKFCKYTSQVII