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CaUC04G070220 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC04G070220
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCiama_Chr04:15862674..15863198
RNA-Seq ExpressionCaUC04G070220
SyntenyCaUC04G070220
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036615.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.6e-5060.77Show/hide
Query:  FFIGQKLWRIVTGDITKPIKSTTKKDDTNSDTSKLVDNDAGQDPVEEDTKFIERLEDF-------LAWLGNTFIPAIHTQFDAFDTAKDLWDFLATRFQS
        F IG+KLWRIVTGDIT+P+K    +                     ED ++IERLED+       + WLGNT IPAIHTQFDAFD+AK+LWDFL TRFQS
Subjt:  FFIGQKLWRIVTGDITKPIKSTTKKDDTNSDTSKLVDNDAGQDPVEEDTKFIERLEDF-------LAWLGNTFIPAIHTQFDAFDTAKDLWDFLATRFQS

Query:  IGLAYYYQLHATLVSLNQE-------------PIWTQLDQAKISPDHLRLIKVLIRLCPKYESIRATLLHRSPLPSLDASI
        IGLA+YYQLH+TLVSLNQE             PIWTQLDQAKISPDH+RLIKVL+ L PKYES+RA LLHR+PLPSLDA++
Subjt:  IGLAYYYQLHATLVSLNQE-------------PIWTQLDQAKISPDHLRLIKVLIRLCPKYESIRATLLHRSPLPSLDASI

KAA0047794.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.2e-5059.89Show/hide
Query:  FFIGQKLWRIVTGDITKPIKSTTKKDDTNSDTSKLVDNDAG------QDPVEEDTKFIERLEDF-------LAWLGNTFIPAIHTQFDAFDTAKDLWDFL
        F IG+KLWRIVTGDITKP+K T    +T+ + ++   NDA        +P  ED ++IERLED+       + WLGNT IPAIHTQFD FD+AK+LW+FL
Subjt:  FFIGQKLWRIVTGDITKPIKSTTKKDDTNSDTSKLVDNDAG------QDPVEEDTKFIERLEDF-------LAWLGNTFIPAIHTQFDAFDTAKDLWDFL

Query:  ATRFQSIGLAYYYQLHATLVSLNQE-------------PIWTQLDQAKISPDHLRLIKVLIRLCPKYESIRATLLHRSPLPSLDASI
         TRFQSIGLA+YYQLH+TLV+LNQE             PIWTQLDQAKISPDH+RLIKVL+ L  +YES+RA LLHR+PLPSLDA++
Subjt:  ATRFQSIGLAYYYQLHATLVSLNQE-------------PIWTQLDQAKISPDHLRLIKVLIRLCPKYESIRATLLHRSPLPSLDASI

TYK03354.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.6e-5060.77Show/hide
Query:  FFIGQKLWRIVTGDITKPIKSTTKKDDTNSDTSKLVDNDAGQDPVEEDTKFIERLEDF-------LAWLGNTFIPAIHTQFDAFDTAKDLWDFLATRFQS
        F IG+KLWRIVTGDIT+P+K    +                     ED ++IERLED+       + WLGNT IPAIHTQFDAFD+AK+LWDFL TRFQS
Subjt:  FFIGQKLWRIVTGDITKPIKSTTKKDDTNSDTSKLVDNDAGQDPVEEDTKFIERLEDF-------LAWLGNTFIPAIHTQFDAFDTAKDLWDFLATRFQS

Query:  IGLAYYYQLHATLVSLNQE-------------PIWTQLDQAKISPDHLRLIKVLIRLCPKYESIRATLLHRSPLPSLDASI
        IGLA+YYQLH+TLVSLNQE             PIWTQLDQAKISPDH+RLIKVL+ L PKYES+RA LLHR+PLPSLDA++
Subjt:  IGLAYYYQLHATLVSLNQE-------------PIWTQLDQAKISPDHLRLIKVLIRLCPKYESIRATLLHRSPLPSLDASI

XP_016901896.1 PREDICTED: uncharacterized protein LOC107991463 [Cucumis melo]1.1e-5161.75Show/hide
Query:  FFIGQKLWRIVTGDITKPIKSTT--KKDDTNSDTSKLVDNDAGQDPVEEDTKFIERLEDF-------LAWLGNTFIPAIHTQFDAFDTAKDLWDFLATRF
        F IG+KLWRIVTGDITKPIK TT  K  D  ++TS ++ ++       ED K+IERLED+       + WLGNT IPAIHTQ D+FDTAK+LWDFLATRF
Subjt:  FFIGQKLWRIVTGDITKPIKSTT--KKDDTNSDTSKLVDNDAGQDPVEEDTKFIERLEDF-------LAWLGNTFIPAIHTQFDAFDTAKDLWDFLATRF

Query:  QSIGLAYYYQLHATLVSLNQE-------------PIWTQLDQAKISPDHLRLIKVLIRLCPKYESIRATLLHRSPLPSLDASI
        QSIGLA+YYQL++TL++LNQE             PIWTQLDQ KI+PDH+RLIKVL+ L P+YES+RA LLHR+PLPSLDA++
Subjt:  QSIGLAYYYQLHATLVSLNQE-------------PIWTQLDQAKISPDHLRLIKVLIRLCPKYESIRATLLHRSPLPSLDASI

XP_031739694.1 uncharacterized protein LOC105434738 [Cucumis sativus]1.7e-5262.7Show/hide
Query:  FFIGQKLWRIVTGDITKPIKSTTKKDDTNSDTSKLVDNDAGQDPVEEDT----KFIERLEDF-------LAWLGNTFIPAIHTQFDAFDTAKDLWDFLAT
        F IG+KLWRIVTGDITKP+K T   D T +     +D D     V+E T    K+IERLED+       + WLGNT IPAIHTQFDAFDTAK+LWDFL+T
Subjt:  FFIGQKLWRIVTGDITKPIKSTTKKDDTNSDTSKLVDNDAGQDPVEEDT----KFIERLEDF-------LAWLGNTFIPAIHTQFDAFDTAKDLWDFLAT

Query:  RFQSIGLAYYYQLHATLVSLNQE-------------PIWTQLDQAKISPDHLRLIKVLIRLCPKYESIRATLLHRSPLPSLDASI
        RFQSIGLA+YYQLH+ LVSLNQE             PIWTQLDQAKI+P+H+RLIKVL+ L P+YES+RA LLHR+PLPSLDA+I
Subjt:  RFQSIGLAYYYQLHATLVSLNQE-------------PIWTQLDQAKISPDHLRLIKVLIRLCPKYESIRATLLHRSPLPSLDASI

TrEMBL top hitse value%identityAlignment
A0A1S4E0Y9 uncharacterized protein LOC1079914635.4e-5261.75Show/hide
Query:  FFIGQKLWRIVTGDITKPIKSTT--KKDDTNSDTSKLVDNDAGQDPVEEDTKFIERLEDF-------LAWLGNTFIPAIHTQFDAFDTAKDLWDFLATRF
        F IG+KLWRIVTGDITKPIK TT  K  D  ++TS ++ ++       ED K+IERLED+       + WLGNT IPAIHTQ D+FDTAK+LWDFLATRF
Subjt:  FFIGQKLWRIVTGDITKPIKSTT--KKDDTNSDTSKLVDNDAGQDPVEEDTKFIERLEDF-------LAWLGNTFIPAIHTQFDAFDTAKDLWDFLATRF

Query:  QSIGLAYYYQLHATLVSLNQE-------------PIWTQLDQAKISPDHLRLIKVLIRLCPKYESIRATLLHRSPLPSLDASI
        QSIGLA+YYQL++TL++LNQE             PIWTQLDQ KI+PDH+RLIKVL+ L P+YES+RA LLHR+PLPSLDA++
Subjt:  QSIGLAYYYQLHATLVSLNQE-------------PIWTQLDQAKISPDHLRLIKVLIRLCPKYESIRATLLHRSPLPSLDASI

A0A5A7T587 Retrovirus-related Pol polyprotein from transposon TNT 1-941.7e-5060.77Show/hide
Query:  FFIGQKLWRIVTGDITKPIKSTTKKDDTNSDTSKLVDNDAGQDPVEEDTKFIERLEDF-------LAWLGNTFIPAIHTQFDAFDTAKDLWDFLATRFQS
        F IG+KLWRIVTGDIT+P+K    +                     ED ++IERLED+       + WLGNT IPAIHTQFDAFD+AK+LWDFL TRFQS
Subjt:  FFIGQKLWRIVTGDITKPIKSTTKKDDTNSDTSKLVDNDAGQDPVEEDTKFIERLEDF-------LAWLGNTFIPAIHTQFDAFDTAKDLWDFLATRFQS

Query:  IGLAYYYQLHATLVSLNQE-------------PIWTQLDQAKISPDHLRLIKVLIRLCPKYESIRATLLHRSPLPSLDASI
        IGLA+YYQLH+TLVSLNQE             PIWTQLDQAKISPDH+RLIKVL+ L PKYES+RA LLHR+PLPSLDA++
Subjt:  IGLAYYYQLHATLVSLNQE-------------PIWTQLDQAKISPDHLRLIKVLIRLCPKYESIRATLLHRSPLPSLDASI

A0A5A7TXR0 Putative mitochondrial protein6.0e-5159.89Show/hide
Query:  FFIGQKLWRIVTGDITKPIKSTTKKDDTNSDTSKLVDNDAG------QDPVEEDTKFIERLEDF-------LAWLGNTFIPAIHTQFDAFDTAKDLWDFL
        F IG+KLWRIVTGDITKP+K T    +T+ + ++   NDA        +P  ED ++IERLED+       + WLGNT IPAIHTQFD FD+AK+LW+FL
Subjt:  FFIGQKLWRIVTGDITKPIKSTTKKDDTNSDTSKLVDNDAG------QDPVEEDTKFIERLEDF-------LAWLGNTFIPAIHTQFDAFDTAKDLWDFL

Query:  ATRFQSIGLAYYYQLHATLVSLNQE-------------PIWTQLDQAKISPDHLRLIKVLIRLCPKYESIRATLLHRSPLPSLDASI
         TRFQSIGLA+YYQLH+TLV+LNQE             PIWTQLDQAKISPDH+RLIKVL+ L  +YES+RA LLHR+PLPSLDA++
Subjt:  ATRFQSIGLAYYYQLHATLVSLNQE-------------PIWTQLDQAKISPDHLRLIKVLIRLCPKYESIRATLLHRSPLPSLDASI

A0A5D3BW47 Retrovirus-related Pol polyprotein from transposon TNT 1-941.7e-5060.77Show/hide
Query:  FFIGQKLWRIVTGDITKPIKSTTKKDDTNSDTSKLVDNDAGQDPVEEDTKFIERLEDF-------LAWLGNTFIPAIHTQFDAFDTAKDLWDFLATRFQS
        F IG+KLWRIVTGDIT+P+K    +                     ED ++IERLED+       + WLGNT IPAIHTQFDAFD+AK+LWDFL TRFQS
Subjt:  FFIGQKLWRIVTGDITKPIKSTTKKDDTNSDTSKLVDNDAGQDPVEEDTKFIERLEDF-------LAWLGNTFIPAIHTQFDAFDTAKDLWDFLATRFQS

Query:  IGLAYYYQLHATLVSLNQE-------------PIWTQLDQAKISPDHLRLIKVLIRLCPKYESIRATLLHRSPLPSLDASI
        IGLA+YYQLH+TLVSLNQE             PIWTQLDQAKISPDH+RLIKVL+ L PKYES+RA LLHR+PLPSLDA++
Subjt:  IGLAYYYQLHATLVSLNQE-------------PIWTQLDQAKISPDHLRLIKVLIRLCPKYESIRATLLHRSPLPSLDASI

A0A5D3DG18 Retrovirus-related Pol polyprotein from transposon TNT 1-943.0e-5060.77Show/hide
Query:  FFIGQKLWRIVTGDITKPIKSTTKKDDTNSDTSKLVDNDAGQDPVEEDTKFIERLEDF-------LAWLGNTFIPAIHTQFDAFDTAKDLWDFLATRFQS
        F IG+KLWRIVTGDITKP+K    +                     ED ++IERLED+       + WLGNT IPAIHTQFDAFD+AK+LWDFL TRFQS
Subjt:  FFIGQKLWRIVTGDITKPIKSTTKKDDTNSDTSKLVDNDAGQDPVEEDTKFIERLEDF-------LAWLGNTFIPAIHTQFDAFDTAKDLWDFLATRFQS

Query:  IGLAYYYQLHATLVSLNQE-------------PIWTQLDQAKISPDHLRLIKVLIRLCPKYESIRATLLHRSPLPSLDASI
        IGLA+YYQLH+TLVSLNQE             PIWTQLDQAKISPDH+RLIKVL+ L P+YES+RA LLHR+PLPSLDA++
Subjt:  IGLAYYYQLHATLVSLNQE-------------PIWTQLDQAKISPDHLRLIKVLIRLCPKYESIRATLLHRSPLPSLDASI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAGTTTTTTATTGGTCAAAAACTATGGCGAATTGTCACAGGAGATATCACCAAACCTATCAAGAGCACGACTAAAAAGGATGACACCAATAGTGATACCTCAAAACTGGT
AGATAATGATGCTGGTCAAGATCCTGTGGAGGAAGATACTAAGTTTATTGAACGACTTGAGGATTTTTTAGCTTGGTTGGGTAACACTTTTATTCCTGCCATACATACTC
AATTTGATGCATTTGACACTGCTAAAGACCTTTGGGATTTTTTAGCCACACGATTTCAATCTATCGGTCTTGCTTATTACTATCAATTACATGCCACCCTTGTTAGTCTT
AATCAAGAACCTATCTGGACACAGTTGGACCAAGCTAAAATCAGTCCTGATCATTTGCGCCTCATCAAAGTTCTCATTAGACTCTGCCCAAAGTATGAATCAATTCGTGC
TACCTTATTACATCGTAGTCCTCTACCATCTCTTGATGCATCAATC
mRNA sequenceShow/hide mRNA sequence
GAGTTTTTTATTGGTCAAAAACTATGGCGAATTGTCACAGGAGATATCACCAAACCTATCAAGAGCACGACTAAAAAGGATGACACCAATAGTGATACCTCAAAACTGGT
AGATAATGATGCTGGTCAAGATCCTGTGGAGGAAGATACTAAGTTTATTGAACGACTTGAGGATTTTTTAGCTTGGTTGGGTAACACTTTTATTCCTGCCATACATACTC
AATTTGATGCATTTGACACTGCTAAAGACCTTTGGGATTTTTTAGCCACACGATTTCAATCTATCGGTCTTGCTTATTACTATCAATTACATGCCACCCTTGTTAGTCTT
AATCAAGAACCTATCTGGACACAGTTGGACCAAGCTAAAATCAGTCCTGATCATTTGCGCCTCATCAAAGTTCTCATTAGACTCTGCCCAAAGTATGAATCAATTCGTGC
TACCTTATTACATCGTAGTCCTCTACCATCTCTTGATGCATCAATC
Protein sequenceShow/hide protein sequence
EFFIGQKLWRIVTGDITKPIKSTTKKDDTNSDTSKLVDNDAGQDPVEEDTKFIERLEDFLAWLGNTFIPAIHTQFDAFDTAKDLWDFLATRFQSIGLAYYYQLHATLVSL
NQEPIWTQLDQAKISPDHLRLIKVLIRLCPKYESIRATLLHRSPLPSLDASI