CuGenDBv2

Gene ID	CaUC04G070250
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	Ciama_Chr04:15913256..15914812
RNA-Seq Expression	CaUC04G070250
Synteny	CaUC04G070250
Gene Ontology terms	NA
InterPro domains	IPR025314 - Domain of unknown function DUF4219

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036574.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.7e-43

64.24

Show/hide

Query:  KHDVLRPITTILDETNYITWAHQMRSFLIGRKLWQIVTGDITKPTK-----NNAED----------DAK--YIITWLGNTSILAIHTQFDAFNTAKALWD
        K+DV RPI+TILD TNYITWAHQMRSFLIGRKLW+IVTGDITKP K      +AED          D+K   IITWLGNTSI AIHTQFDAF++AK LWD
Subjt:  KHDVLRPITTILDETNYITWAHQMRSFLIGRKLWQIVTGDITKPTK-----NNAED----------DAK--YIITWLGNTSILAIHTQFDAFNTAKALWD

Query:  FLATRFQSIGLAHYYHLQATL----------------------TQLDQAKISTDHLRLIKVLMGL
        FL TRFQSIGLAHYY L +TL                      TQLDQAKIS DH+RLIKVLMGL
Subjt:  FLATRFQSIGLAHYYHLQATL----------------------TQLDQAKISTDHLRLIKVLMGL

KAA0036615.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

5.0e-43

63.03

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Query:  KHDVLRPITTILDETNYITWAHQMRSFLIGRKLWQIVTGDITKPTK-----NNAED----------DAK--YIITWLGNTSILAIHTQFDAFNTAKALWD
        K+DV RPI+TILD+TNYITWAHQMRSFLIGRKLW+IVTGDIT+P K      +AED          D+K   IITWLGNTSI AIHTQFDAF++AK LWD
Subjt:  KHDVLRPITTILDETNYITWAHQMRSFLIGRKLWQIVTGDITKPTK-----NNAED----------DAK--YIITWLGNTSILAIHTQFDAFNTAKALWD

Query:  FLATRFQSIGLAHYYHLQATL----------------------TQLDQAKISTDHLRLIKVLMGL
        FL TRFQSIGLAHYY L +TL                      TQLDQAKIS DH+RLIKVL+GL
Subjt:  FLATRFQSIGLAHYYHLQATL----------------------TQLDQAKISTDHLRLIKVLMGL

KAA0043149.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.7e-43

64.24

Show/hide

Query:  KHDVLRPITTILDETNYITWAHQMRSFLIGRKLWQIVTGDITKPTK-----NNAED----------DAK--YIITWLGNTSILAIHTQFDAFNTAKALWD
        K+DV RPI+TILD TNYITWAHQMRSFLIGRKLW+IVTGDITKP K      +AED          D+K   IITWLGNTSI AIHTQFDAF++AK LWD
Subjt:  KHDVLRPITTILDETNYITWAHQMRSFLIGRKLWQIVTGDITKPTK-----NNAED----------DAK--YIITWLGNTSILAIHTQFDAFNTAKALWD

Query:  FLATRFQSIGLAHYYHLQATL----------------------TQLDQAKISTDHLRLIKVLMGL
        FL TRFQSIGLAHYY L +TL                      TQLDQAKIS DH+RLIKVLMGL
Subjt:  FLATRFQSIGLAHYYHLQATL----------------------TQLDQAKISTDHLRLIKVLMGL

TYK03354.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

5.0e-43

63.03

Show/hide

Query:  KHDVLRPITTILDETNYITWAHQMRSFLIGRKLWQIVTGDITKPTK-----NNAED----------DAK--YIITWLGNTSILAIHTQFDAFNTAKALWD
        K+DV RPI+TILD+TNYITWAHQMRSFLIGRKLW+IVTGDIT+P K      +AED          D+K   IITWLGNTSI AIHTQFDAF++AK LWD
Subjt:  KHDVLRPITTILDETNYITWAHQMRSFLIGRKLWQIVTGDITKPTK-----NNAED----------DAK--YIITWLGNTSILAIHTQFDAFNTAKALWD

Query:  FLATRFQSIGLAHYYHLQATL----------------------TQLDQAKISTDHLRLIKVLMGL
        FL TRFQSIGLAHYY L +TL                      TQLDQAKIS DH+RLIKVL+GL
Subjt:  FLATRFQSIGLAHYYHLQATL----------------------TQLDQAKISTDHLRLIKVLMGL

XP_008445037.1 PREDICTED: uncharacterized protein LOC103488200 [Cucumis melo]

5.0e-43

63.64

Show/hide

Query:  KHDVLRPITTILDETNYITWAHQMRSFLIGRKLWQIVTGDITKPTK-----NNAED----------DAK--YIITWLGNTSILAIHTQFDAFNTAKALWD
        K+DV RPI+TILD TNYITWAHQMRSFLIGRKLW+IVTGDITKP K      +AED          D+K   IITWLGNTSI AIHTQFDAF++AK LWD
Subjt:  KHDVLRPITTILDETNYITWAHQMRSFLIGRKLWQIVTGDITKPTK-----NNAED----------DAK--YIITWLGNTSILAIHTQFDAFNTAKALWD

Query:  FLATRFQSIGLAHYYHLQATL----------------------TQLDQAKISTDHLRLIKVLMGL
        FL TRFQSIGLAHYY L +TL                      TQL+QAKIS DH+RLIKVLMGL
Subjt:  FLATRFQSIGLAHYYHLQATL----------------------TQLDQAKISTDHLRLIKVLMGL

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BBA1 uncharacterized protein LOC103488200

2.4e-43

63.64

Show/hide

Query:  KHDVLRPITTILDETNYITWAHQMRSFLIGRKLWQIVTGDITKPTK-----NNAED----------DAK--YIITWLGNTSILAIHTQFDAFNTAKALWD
        K+DV RPI+TILD TNYITWAHQMRSFLIGRKLW+IVTGDITKP K      +AED          D+K   IITWLGNTSI AIHTQFDAF++AK LWD
Subjt:  KHDVLRPITTILDETNYITWAHQMRSFLIGRKLWQIVTGDITKPTK-----NNAED----------DAK--YIITWLGNTSILAIHTQFDAFNTAKALWD

Query:  FLATRFQSIGLAHYYHLQATL----------------------TQLDQAKISTDHLRLIKVLMGL
        FL TRFQSIGLAHYY L +TL                      TQL+QAKIS DH+RLIKVLMGL
Subjt:  FLATRFQSIGLAHYYHLQATL----------------------TQLDQAKISTDHLRLIKVLMGL

A0A5A7SZ66 Retrovirus-related Pol polyprotein from transposon TNT 1-94

8.3e-44

64.24

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Query:  KHDVLRPITTILDETNYITWAHQMRSFLIGRKLWQIVTGDITKPTK-----NNAED----------DAK--YIITWLGNTSILAIHTQFDAFNTAKALWD
        K+DV RPI+TILD TNYITWAHQMRSFLIGRKLW+IVTGDITKP K      +AED          D+K   IITWLGNTSI AIHTQFDAF++AK LWD
Subjt:  KHDVLRPITTILDETNYITWAHQMRSFLIGRKLWQIVTGDITKPTK-----NNAED----------DAK--YIITWLGNTSILAIHTQFDAFNTAKALWD

Query:  FLATRFQSIGLAHYYHLQATL----------------------TQLDQAKISTDHLRLIKVLMGL
        FL TRFQSIGLAHYY L +TL                      TQLDQAKIS DH+RLIKVLMGL
Subjt:  FLATRFQSIGLAHYYHLQATL----------------------TQLDQAKISTDHLRLIKVLMGL

A0A5A7T587 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.4e-43

63.03

Show/hide

Query:  KHDVLRPITTILDETNYITWAHQMRSFLIGRKLWQIVTGDITKPTK-----NNAED----------DAK--YIITWLGNTSILAIHTQFDAFNTAKALWD
        K+DV RPI+TILD+TNYITWAHQMRSFLIGRKLW+IVTGDIT+P K      +AED          D+K   IITWLGNTSI AIHTQFDAF++AK LWD
Subjt:  KHDVLRPITTILDETNYITWAHQMRSFLIGRKLWQIVTGDITKPTK-----NNAED----------DAK--YIITWLGNTSILAIHTQFDAFNTAKALWD

Query:  FLATRFQSIGLAHYYHLQATL----------------------TQLDQAKISTDHLRLIKVLMGL
        FL TRFQSIGLAHYY L +TL                      TQLDQAKIS DH+RLIKVL+GL
Subjt:  FLATRFQSIGLAHYYHLQATL----------------------TQLDQAKISTDHLRLIKVLMGL

A0A5D3BW47 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.4e-43

63.03

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Query:  KHDVLRPITTILDETNYITWAHQMRSFLIGRKLWQIVTGDITKPTK-----NNAED----------DAK--YIITWLGNTSILAIHTQFDAFNTAKALWD
        K+DV RPI+TILD+TNYITWAHQMRSFLIGRKLW+IVTGDIT+P K      +AED          D+K   IITWLGNTSI AIHTQFDAF++AK LWD
Subjt:  KHDVLRPITTILDETNYITWAHQMRSFLIGRKLWQIVTGDITKPTK-----NNAED----------DAK--YIITWLGNTSILAIHTQFDAFNTAKALWD

Query:  FLATRFQSIGLAHYYHLQATL----------------------TQLDQAKISTDHLRLIKVLMGL
        FL TRFQSIGLAHYY L +TL                      TQLDQAKIS DH+RLIKVL+GL
Subjt:  FLATRFQSIGLAHYYHLQATL----------------------TQLDQAKISTDHLRLIKVLMGL

A0A5D3DG18 Retrovirus-related Pol polyprotein from transposon TNT 1-94

8.3e-44

64.24

Show/hide

Query:  KHDVLRPITTILDETNYITWAHQMRSFLIGRKLWQIVTGDITKPTK-----NNAED----------DAK--YIITWLGNTSILAIHTQFDAFNTAKALWD
        K+DV RPI+TILD TNYITWAHQMRSFLIGRKLW+IVTGDITKP K      +AED          D+K   IITWLGNTSI AIHTQFDAF++AK LWD
Subjt:  KHDVLRPITTILDETNYITWAHQMRSFLIGRKLWQIVTGDITKPTK-----NNAED----------DAK--YIITWLGNTSILAIHTQFDAFNTAKALWD

Query:  FLATRFQSIGLAHYYHLQATL----------------------TQLDQAKISTDHLRLIKVLMGL
        FL TRFQSIGLAHYY L +TL                      TQLDQAKIS DH+RLIKVLMGL
Subjt:  FLATRFQSIGLAHYYHLQATL----------------------TQLDQAKISTDHLRLIKVLMGL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAGGGGTTTACAATCTGCCGCCTACCAGCATCCACCACCGCTAGATCCGTCGCCATCGATCAGATCCGCCGTCGACCACCACGACTGTTCGTCACGTTCTCTGTTACA
GGGTTCGTCCTCCGACTCGTATATAGCGGTTTCAGTCTGTTCATCGCGTCCTCTGGCAAGATCTCTGTTCATCGAGTTCTCCGACAAGCTTTCCGTCGTGTTCTCCGGTG
TTCTCAGTCTCCTTGCATCCTTGTCGTTCTCCTCCATTCCAGATCTAAGATCCGCTAGATCTAACGGCAATCTACATCATTCACTCACAAACGCAGCGCCTAGATTCGTG
AACACAGCGCCCAGATTTGTGAACGCAGCGCCCAGATTCGTGAACGCAGTGCCCAGAACGCAGCGCCAGACCATTGAAGGCAACTGCCCAGAACGCAGCGCCAGACCAGT
GAAGGCAACGTCTAGTCCCATGAACGCAGCGCCCAAACCCGTGAACGCAGCGCCCAGATCCATGAACGCAGCGCCCAGATCCAAACATGACGTTTTGCGCCCTATTACCA
CTATACTTGATGAGACAAATTACATCACTTGGGCTCATCAAATGAGGAGTTTCTTAATTGGTCGAAAACTATGGCAAATTGTCACGGGAGACATCACCAAACCCACCAAA
AATAATGCTGAGGATGATGCTAAGTATATAATAACTTGGTTGGGTAACACATCTATCCTTGCAATACATACTCAATTCGATGCATTTAATACTGCTAAAGCACTTTGGGA
CTTTTTAGCCACACGATTTCAGTCTATTGGTCTTGCTCATTACTATCATTTACAGGCTACCCTTACACAGTTAGATCAAGCCAAGATTAGTACTGATCATTTACGTCTCA
TCAAAGTTCTCATGGGACTTCTCCTCTACCATCTCTTGACACAACAATCCAGGAAATACTATTTGAAGAAAAGAGACTTGGCATAA

mRNA sequence

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Protein sequence

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MRGLQSAAYQHPPPLDPSPSIRSAVDHHDCSSRSLLQGSSSDSYIAVSVCSSRPLARSLFIEFSDKLSVVFSGVLSLLASLSFSSIPDLRSARSNGNLHHSLTNAAPRFV
NTAPRFVNAAPRFVNAVPRTQRQTIEGNCPERSARPVKATSSPMNAAPKPVNAAPRSMNAAPRSKHDVLRPITTILDETNYITWAHQMRSFLIGRKLWQIVTGDITKPTK
NNAEDDAKYIITWLGNTSILAIHTQFDAFNTAKALWDFLATRFQSIGLAHYYHLQATLTQLDQAKISTDHLRLIKVLMGLLLYHLLTQQSRKYYLKKRDLA

CaUC04G070250 (gene) of Watermelon (USVL246-FR2) v1 genome